Wall clock time and date at job start Tue Mar 31 2020 16:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34235 * 116.99548 * 2 1 4 4 O 1.20821 * 120.00289 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99536 * 180.02562 * 3 2 1 6 6 H 1.08998 * 115.51752 * 325.41311 * 5 3 2 7 7 C 1.52999 * 117.44039 * 110.75828 * 5 3 2 8 8 H 1.08992 * 120.26456 * 356.17260 * 7 5 3 9 9 C 1.54388 * 118.11927 * 199.18535 * 7 5 3 10 10 N 1.48146 * 104.62031 * 320.54383 * 9 7 5 11 11 S 1.65602 * 127.83446 * 140.41531 * 10 9 7 12 12 O 1.42103 * 104.27300 * 206.07209 * 11 10 9 13 13 O 1.42103 * 104.27798 * 333.92666 * 11 10 9 14 14 C 1.81394 * 104.45128 * 90.00220 * 11 10 9 15 15 C 1.52997 * 109.47164 * 179.97438 * 14 11 10 16 16 C 1.53002 * 109.47278 * 299.99918 * 15 14 11 17 17 C 1.53002 * 109.47073 * 60.00256 * 15 14 11 18 18 C 1.50707 * 109.47116 * 179.97438 * 15 14 11 19 19 H 1.07996 * 119.99891 * 359.97438 * 18 15 14 20 20 C 1.37874 * 119.99886 * 180.02562 * 18 15 14 21 21 N 1.31519 * 120.00284 * 0.02562 * 20 18 15 22 22 Si 1.86801 * 119.99871 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.46982 * 60.00252 * 22 20 18 24 24 H 1.48502 * 109.47002 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47055 * 300.00078 * 22 20 18 26 26 C 1.48143 * 104.32545 * 320.41530 * 10 9 7 27 27 C 1.52998 * 117.43820 * 179.97438 * 5 3 2 28 28 H 1.09001 * 119.54446 * 5.71212 * 27 5 3 29 29 H 1.09003 * 109.47365 * 299.99544 * 1 2 3 30 30 H 1.08997 * 109.47316 * 60.00494 * 1 2 3 31 31 H 1.08999 * 109.46817 * 180.02562 * 1 2 3 32 32 H 1.09008 * 110.40644 * 201.75817 * 9 7 5 33 33 H 1.09000 * 110.40697 * 79.33689 * 9 7 5 34 34 H 1.09003 * 109.47039 * 299.99936 * 14 11 10 35 35 H 1.08999 * 109.47129 * 59.99712 * 14 11 10 36 36 H 1.08996 * 109.47044 * 59.99942 * 16 15 14 37 37 H 1.08999 * 109.46660 * 180.02562 * 16 15 14 38 38 H 1.08999 * 109.47094 * 300.00064 * 16 15 14 39 39 H 1.09003 * 109.47227 * 59.99733 * 17 15 14 40 40 H 1.09003 * 109.47196 * 180.02562 * 17 15 14 41 41 H 1.09004 * 109.46534 * 299.99888 * 17 15 14 42 42 H 0.96994 * 119.99882 * 180.02562 * 21 20 18 43 43 H 1.09001 * 110.40952 * 158.36858 * 26 10 9 44 44 H 1.09000 * 110.40414 * 280.79968 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 4.0778 0.4907 0.5574 7 6 4.2447 1.7927 -1.2705 8 1 3.6507 2.0296 -2.1530 9 6 5.7402 1.4710 -1.4794 10 7 6.3448 1.6135 -0.1345 11 16 7.5094 0.6639 0.5615 12 8 7.2894 0.8068 1.9581 13 8 7.3622 -0.5965 -0.0781 14 6 9.0755 1.4428 0.0808 15 6 10.2424 0.6483 0.6708 16 6 10.1283 0.6315 2.1964 17 6 10.2024 -0.7863 0.1405 18 6 11.5435 1.2951 0.2708 19 1 11.5386 2.1836 -0.3430 20 6 12.7402 0.7518 0.6878 21 7 12.7462 -0.3311 1.4342 22 14 14.3530 1.5530 0.1916 23 1 14.3927 2.9456 0.7058 24 1 15.4856 0.7813 0.7632 25 1 14.4628 1.5688 -1.2893 26 6 5.6713 2.7982 0.4465 27 6 4.1993 2.6679 -0.0012 28 1 3.5626 3.5476 0.0932 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 6.1882 2.1810 -2.1747 33 1 5.8621 0.4514 -1.8449 34 1 9.1565 1.4551 -1.0061 35 1 9.1041 2.4647 0.4589 36 1 9.1873 0.1635 2.4853 37 1 10.9600 0.0659 2.6166 38 1 10.1568 1.6536 2.5742 39 1 10.2836 -0.7743 -0.9465 40 1 11.0335 -1.3524 0.5611 41 1 9.2613 -1.2543 0.4294 42 1 13.5880 -0.7130 1.7278 43 1 5.7413 2.7800 1.5341 44 1 6.1085 3.7155 0.0520 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831606665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:03 Heat of formation + Delta-G solvation = -112.299426 kcal Electronic energy + Delta-G solvation = -27380.879742 eV Core-core repulsion = 23427.330496 eV Total energy + Delta-G solvation = -3953.549245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.08957 -39.50842 -36.70220 -36.62554 -36.30929 -35.36208 -33.31142 -31.69153 -28.73171 -28.54520 -26.80591 -25.98377 -25.75196 -25.25145 -22.81869 -20.67007 -20.27232 -19.46622 -18.65940 -18.17779 -17.46690 -17.01528 -16.57236 -16.00973 -15.54883 -15.51082 -14.85973 -14.66972 -14.16231 -14.12647 -13.99818 -13.41545 -13.24524 -13.04702 -12.97348 -12.54064 -12.49189 -12.33055 -12.15466 -11.78883 -11.67747 -11.43919 -11.13595 -11.10602 -11.07893 -10.98761 -10.80443 -10.73639 -10.59548 -10.44644 -10.30849 -10.19858 -10.08533 -9.68764 -9.64151 -9.13147 -8.70169 -8.42643 -6.06001 -4.18360 0.70311 1.77050 2.30390 3.00758 3.25224 3.28451 3.30967 3.32331 4.12525 4.22550 4.28473 4.36369 4.44976 4.52209 4.75330 4.80402 4.87186 4.88544 5.12382 5.19016 5.22058 5.29505 5.40860 5.52026 5.60046 5.64013 5.64971 5.68932 5.76161 6.05487 6.08585 6.33363 6.33600 6.66787 6.75867 6.86471 7.00297 7.27978 7.46484 7.46779 7.65009 7.94926 8.06190 8.29706 8.79927 9.47207 10.95314 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.032689 B = 0.002816 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.352056 B = 9939.240965 C =10190.103442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.352 6.352 3 C 0.499 3.501 4 O -0.508 6.508 5 C -0.138 4.138 6 H 0.135 0.865 7 C -0.139 4.139 8 H 0.132 0.868 9 C 0.145 3.855 10 N -1.031 6.031 11 S 2.609 3.391 12 O -0.956 6.956 13 O -0.956 6.956 14 C -0.579 4.579 15 C 0.082 3.918 16 C -0.164 4.164 17 C -0.164 4.164 18 C -0.503 4.503 19 H 0.058 0.942 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.897 3.103 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 C 0.143 3.857 27 C -0.136 4.136 28 H 0.139 0.861 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.027 0.973 37 H 0.095 0.905 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.095 0.905 41 H 0.027 0.973 42 H 0.263 0.737 43 H 0.094 0.906 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.005 4.325 -5.249 20.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.268 6.268 3 C 0.343 3.657 4 O -0.396 6.396 5 C -0.157 4.157 6 H 0.152 0.848 7 C -0.158 4.158 8 H 0.150 0.850 9 C 0.019 3.981 10 N -0.867 5.867 11 S 2.709 3.291 12 O -0.947 6.947 13 O -0.947 6.947 14 C -0.713 4.713 15 C 0.080 3.920 16 C -0.222 4.222 17 C -0.222 4.222 18 C -0.542 4.542 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.522 5.522 22 Si 0.724 3.276 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.203 1.203 26 C 0.018 3.982 27 C -0.155 4.155 28 H 0.157 0.843 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.046 0.954 37 H 0.114 0.886 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.114 0.886 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.113 0.887 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.220 3.640 -4.577 20.090 hybrid contribution 0.933 0.974 -0.595 1.474 sum -18.288 4.615 -5.172 19.557 Atomic orbital electron populations 1.23306 0.76052 1.03904 1.02564 1.86526 1.23503 1.32975 1.83802 1.22461 0.90139 0.81284 0.71837 1.90653 1.66901 1.36403 1.45607 1.21571 0.87790 1.01423 1.04935 0.84766 1.23601 0.97100 1.03133 0.92015 0.85006 1.21590 0.88676 1.03395 0.84436 1.59710 1.55660 1.44588 1.26703 1.05398 0.75504 0.74165 0.74043 1.93543 1.84799 1.86291 1.30065 1.93543 1.85677 1.38313 1.77116 1.30579 1.17461 1.12431 1.10848 1.17942 0.90353 0.91520 0.92224 1.22282 1.01429 1.01034 0.97442 1.22284 1.01595 0.98350 0.99941 1.20893 0.89207 1.11599 1.32545 0.92341 1.24941 0.99066 0.94906 0.94814 1.69788 1.26589 1.20509 1.35270 0.86586 0.82795 0.79367 0.78810 1.20259 1.21161 1.20265 1.21617 0.88146 0.88381 1.00069 1.23666 0.97307 0.93397 1.01168 0.84300 0.91788 0.91833 0.87883 0.89506 0.88656 0.86329 0.86332 0.95402 0.88600 0.94429 0.94425 0.88592 0.95419 0.92637 0.88733 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.33 16 2 O -0.35 -3.90 10.57 -39.27 -0.41 -4.32 16 3 C 0.50 5.96 7.74 36.01 0.28 6.24 16 4 O -0.51 -6.80 16.08 -18.75 -0.30 -7.11 16 5 C -0.14 -1.59 5.65 -91.77 -0.52 -2.10 16 6 H 0.13 1.71 8.00 -51.93 -0.42 1.30 16 7 C -0.14 -1.33 6.88 -89.24 -0.61 -1.94 16 8 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 9 C 0.14 1.52 7.07 -2.41 -0.02 1.50 16 10 N -1.03 -13.62 3.22 -110.27 -0.35 -13.97 16 11 S 2.61 46.84 4.77 -107.50 -0.51 46.33 16 12 O -0.96 -19.46 14.99 -57.54 -0.86 -20.32 16 13 O -0.96 -19.36 14.99 -57.54 -0.86 -20.23 16 14 C -0.58 -10.93 5.12 37.16 0.19 -10.74 16 15 C 0.08 1.95 0.52 -155.66 -0.08 1.87 16 16 C -0.16 -3.98 7.78 37.16 0.29 -3.70 16 17 C -0.16 -3.97 7.77 37.16 0.29 -3.68 16 18 C -0.50 -13.01 8.01 -34.44 -0.28 -13.28 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 21 N -0.88 -23.88 9.35 55.43 0.52 -23.36 16 22 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.14 1.55 7.07 -2.40 -0.02 1.53 16 27 C -0.14 -1.36 6.62 -89.23 -0.59 -1.95 16 28 H 0.14 1.26 7.80 -51.93 -0.41 0.85 16 29 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 30 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.10 1.05 7.63 -51.93 -0.40 0.65 16 34 H 0.12 2.02 8.14 -51.92 -0.42 1.59 16 35 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 36 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 37 H 0.10 2.51 6.07 -51.93 -0.32 2.20 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.10 2.51 6.07 -51.93 -0.32 2.20 16 41 H 0.03 0.63 5.46 -51.93 -0.28 0.35 16 42 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 43 H 0.09 1.08 7.63 -51.93 -0.40 0.68 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 362.36 15.07 5.46 5.46 Total: -1.00 -32.74 362.36 -9.02 -41.76 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.58 Total: 3.71 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -0.09 Total: -23.32 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.16 Total: -37.34 kcal Atomic # 8 Polarization: -49.54 SS G_CDS: -2.44 Total: -51.98 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 46.84 SS G_CDS: -0.51 Total: 46.33 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.74 -9.02 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831606665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.535 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds