Wall clock time and date at job start Tue Mar 31 2020 16:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34235 * 116.99548 * 2 1 4 4 O 1.20821 * 120.00289 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99536 * 180.02562 * 3 2 1 6 6 H 1.08998 * 115.51752 * 325.41311 * 5 3 2 7 7 C 1.52999 * 117.44039 * 110.75828 * 5 3 2 8 8 H 1.08992 * 120.26456 * 356.17260 * 7 5 3 9 9 C 1.54388 * 118.11927 * 199.18535 * 7 5 3 10 10 N 1.48146 * 104.62031 * 320.54383 * 9 7 5 11 11 S 1.65602 * 127.83446 * 140.41531 * 10 9 7 12 12 O 1.42103 * 104.27300 * 206.07209 * 11 10 9 13 13 O 1.42103 * 104.27798 * 333.92666 * 11 10 9 14 14 C 1.81394 * 104.45128 * 90.00220 * 11 10 9 15 15 C 1.52997 * 109.47164 * 179.97438 * 14 11 10 16 16 C 1.53002 * 109.47278 * 299.99918 * 15 14 11 17 17 C 1.53002 * 109.47073 * 60.00256 * 15 14 11 18 18 C 1.50707 * 109.47116 * 179.97438 * 15 14 11 19 19 H 1.07996 * 119.99891 * 359.97438 * 18 15 14 20 20 C 1.37874 * 119.99886 * 180.02562 * 18 15 14 21 21 N 1.31519 * 120.00284 * 0.02562 * 20 18 15 22 22 Si 1.86801 * 119.99871 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.46982 * 60.00252 * 22 20 18 24 24 H 1.48502 * 109.47002 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47055 * 300.00078 * 22 20 18 26 26 C 1.48143 * 104.32545 * 320.41530 * 10 9 7 27 27 C 1.52998 * 117.43820 * 179.97438 * 5 3 2 28 28 H 1.09001 * 119.54446 * 5.71212 * 27 5 3 29 29 H 1.09003 * 109.47365 * 299.99544 * 1 2 3 30 30 H 1.08997 * 109.47316 * 60.00494 * 1 2 3 31 31 H 1.08999 * 109.46817 * 180.02562 * 1 2 3 32 32 H 1.09008 * 110.40644 * 201.75817 * 9 7 5 33 33 H 1.09000 * 110.40697 * 79.33689 * 9 7 5 34 34 H 1.09003 * 109.47039 * 299.99936 * 14 11 10 35 35 H 1.08999 * 109.47129 * 59.99712 * 14 11 10 36 36 H 1.08996 * 109.47044 * 59.99942 * 16 15 14 37 37 H 1.08999 * 109.46660 * 180.02562 * 16 15 14 38 38 H 1.08999 * 109.47094 * 300.00064 * 16 15 14 39 39 H 1.09003 * 109.47227 * 59.99733 * 17 15 14 40 40 H 1.09003 * 109.47196 * 180.02562 * 17 15 14 41 41 H 1.09004 * 109.46534 * 299.99888 * 17 15 14 42 42 H 0.96994 * 119.99882 * 180.02562 * 21 20 18 43 43 H 1.09001 * 110.40952 * 158.36858 * 26 10 9 44 44 H 1.09000 * 110.40414 * 280.79968 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 4.0778 0.4907 0.5574 7 6 4.2447 1.7927 -1.2705 8 1 3.6507 2.0296 -2.1530 9 6 5.7402 1.4710 -1.4794 10 7 6.3448 1.6135 -0.1345 11 16 7.5094 0.6639 0.5615 12 8 7.2894 0.8068 1.9581 13 8 7.3622 -0.5965 -0.0781 14 6 9.0755 1.4428 0.0808 15 6 10.2424 0.6483 0.6708 16 6 10.1283 0.6315 2.1964 17 6 10.2024 -0.7863 0.1405 18 6 11.5435 1.2951 0.2708 19 1 11.5386 2.1836 -0.3430 20 6 12.7402 0.7518 0.6878 21 7 12.7462 -0.3311 1.4342 22 14 14.3530 1.5530 0.1916 23 1 14.3927 2.9456 0.7058 24 1 15.4856 0.7813 0.7632 25 1 14.4628 1.5688 -1.2893 26 6 5.6713 2.7982 0.4465 27 6 4.1993 2.6679 -0.0012 28 1 3.5626 3.5476 0.0932 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 6.1882 2.1810 -2.1747 33 1 5.8621 0.4514 -1.8449 34 1 9.1565 1.4551 -1.0061 35 1 9.1041 2.4647 0.4589 36 1 9.1873 0.1635 2.4853 37 1 10.9600 0.0659 2.6166 38 1 10.1568 1.6536 2.5742 39 1 10.2836 -0.7743 -0.9465 40 1 11.0335 -1.3524 0.5611 41 1 9.2613 -1.2543 0.4294 42 1 13.5880 -0.7130 1.7278 43 1 5.7413 2.7800 1.5341 44 1 6.1085 3.7155 0.0520 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831606665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:02 Heat of formation + Delta-G solvation = -132.926971 kcal Electronic energy + Delta-G solvation = -27381.774219 eV Core-core repulsion = 23427.330496 eV Total energy + Delta-G solvation = -3954.443723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.94315 -40.35673 -38.14144 -38.12270 -37.56932 -36.90156 -34.26116 -33.62163 -29.54689 -29.27333 -28.35705 -27.69359 -27.25092 -26.89552 -23.69536 -21.49720 -21.35605 -21.04275 -19.84685 -19.14487 -18.74081 -17.94622 -17.83440 -17.40270 -16.92305 -16.89202 -16.64503 -15.64371 -15.32725 -15.12782 -14.86975 -14.65412 -14.62494 -14.42225 -14.21225 -14.03896 -13.84371 -13.34882 -13.23992 -13.04906 -12.99661 -12.86410 -12.81153 -12.67610 -12.55250 -12.42672 -12.16665 -12.15601 -11.96819 -11.87092 -11.69660 -11.56339 -11.40929 -11.38246 -10.94278 -10.64270 -10.40577 -10.07907 -8.02369 -6.21226 -0.70188 0.90080 1.46463 1.46834 1.53975 1.54766 1.77947 2.45019 2.48349 2.91133 3.12009 3.20636 3.32293 3.56335 3.64588 3.92746 4.00891 4.03156 4.20368 4.25454 4.29412 4.32645 4.47927 4.60073 4.67453 4.68249 4.78859 4.85048 4.86006 4.86537 4.89074 4.91995 4.99248 5.08049 5.14375 5.25627 5.39141 5.40277 5.52376 5.65201 5.97586 6.11856 6.34326 6.60953 6.83695 7.47258 8.97303 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.032689 B = 0.002816 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.352056 B = 9939.240965 C =10190.103442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.503 3.497 4 O -0.526 6.526 5 C -0.164 4.164 6 H 0.114 0.886 7 C -0.120 4.120 8 H 0.158 0.842 9 C 0.136 3.864 10 N -1.031 6.031 11 S 2.630 3.370 12 O -0.986 6.986 13 O -0.984 6.984 14 C -0.582 4.582 15 C 0.069 3.931 16 C -0.161 4.161 17 C -0.160 4.160 18 C -0.517 4.517 19 H 0.065 0.935 20 C 0.017 3.983 21 N -0.909 5.909 22 Si 0.954 3.046 23 H -0.271 1.271 24 H -0.289 1.289 25 H -0.271 1.271 26 C 0.137 3.863 27 C -0.126 4.126 28 H 0.154 0.846 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.070 0.930 41 H 0.031 0.969 42 H 0.261 0.739 43 H 0.083 0.917 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.969 6.201 -6.984 22.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.347 3.653 4 O -0.416 6.416 5 C -0.183 4.183 6 H 0.132 0.868 7 C -0.140 4.140 8 H 0.176 0.824 9 C 0.012 3.988 10 N -0.869 5.869 11 S 2.730 3.270 12 O -0.977 6.977 13 O -0.975 6.975 14 C -0.715 4.715 15 C 0.067 3.933 16 C -0.219 4.219 17 C -0.218 4.218 18 C -0.556 4.556 19 H 0.083 0.917 20 C -0.183 4.183 21 N -0.548 5.548 22 Si 0.780 3.220 23 H -0.197 1.197 24 H -0.215 1.215 25 H -0.196 1.196 26 C 0.012 3.988 27 C -0.146 4.146 28 H 0.171 0.829 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.148 0.852 32 H 0.141 0.859 33 H 0.105 0.895 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.050 0.950 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.181 5.508 -6.315 21.851 hybrid contribution 1.122 0.360 -0.051 1.179 sum -19.059 5.868 -6.366 20.933 Atomic orbital electron populations 1.23610 0.74193 1.05842 1.02878 1.86515 1.25456 1.32698 1.83481 1.22496 0.90248 0.81237 0.71271 1.90635 1.67305 1.36886 1.46771 1.21625 0.87738 1.02073 1.06878 0.86779 1.23708 0.96467 1.01509 0.92273 0.82414 1.21967 0.89263 1.04220 0.83366 1.59214 1.54509 1.45046 1.28167 1.04349 0.75612 0.73820 0.73219 1.93497 1.85254 1.86760 1.32187 1.93499 1.86138 1.40387 1.77464 1.30503 1.16294 1.12709 1.12005 1.17927 0.91928 0.91654 0.91815 1.22216 1.00522 1.00784 0.98333 1.22215 1.00700 0.98877 1.00024 1.21269 0.90249 1.11766 1.32318 0.91699 1.25691 1.02158 0.95431 0.94987 1.69940 1.26984 1.21634 1.36194 0.85669 0.79134 0.78539 0.78611 1.19662 1.21481 1.19624 1.21948 0.88614 0.88493 0.99733 1.23693 0.96692 0.93001 1.01171 0.82886 0.91778 0.91234 0.85240 0.85885 0.89463 0.84269 0.84382 0.95019 0.91126 0.94025 0.93947 0.91131 0.95021 0.92940 0.89853 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.57 16 2 O -0.37 -7.83 10.57 -51.46 -0.54 -8.37 16 3 C 0.50 11.52 7.74 71.24 0.55 12.07 16 4 O -0.53 -13.44 16.08 21.98 0.35 -13.08 16 5 C -0.16 -3.57 5.65 -11.54 -0.07 -3.64 16 6 H 0.11 2.94 8.00 -2.39 -0.02 2.92 16 7 C -0.12 -1.95 6.88 -9.90 -0.07 -2.02 16 8 H 0.16 1.79 8.14 -2.39 -0.02 1.77 16 9 C 0.14 2.44 7.07 86.53 0.61 3.06 16 10 N -1.03 -25.00 3.22 -502.79 -1.62 -26.62 16 11 S 2.63 92.12 4.77 -56.49 -0.27 91.85 16 12 O -0.99 -40.07 14.99 -127.65 -1.91 -41.99 16 13 O -0.98 -39.62 14.99 -127.65 -1.91 -41.54 16 14 C -0.58 -20.96 5.12 71.98 0.37 -20.59 16 15 C 0.07 3.25 0.52 -52.93 -0.03 3.22 16 16 C -0.16 -7.90 7.78 71.98 0.56 -7.34 16 17 C -0.16 -7.85 7.77 71.98 0.56 -7.29 16 18 C -0.52 -26.35 8.01 25.60 0.21 -26.14 16 19 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 20 C 0.02 0.87 5.15 84.65 0.44 1.31 16 21 N -0.91 -50.01 9.35 21.45 0.20 -49.81 16 22 Si 0.95 41.51 29.54 68.60 2.03 43.53 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 26 C 0.14 2.58 7.07 86.54 0.61 3.19 16 27 C -0.13 -2.21 6.62 -9.89 -0.07 -2.27 16 28 H 0.15 2.31 7.80 -2.39 -0.02 2.29 16 29 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 30 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 31 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.09 1.74 7.63 -2.39 -0.02 1.72 16 34 H 0.14 4.37 8.14 -2.39 -0.02 4.35 16 35 H 0.14 4.37 8.14 -2.39 -0.02 4.35 16 36 H 0.03 1.49 5.46 -2.39 -0.01 1.47 16 37 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 38 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 41 H 0.03 1.48 5.46 -2.38 -0.01 1.46 16 42 H 0.26 13.83 8.31 -92.71 -0.77 13.05 16 43 H 0.08 1.78 7.63 -2.39 -0.02 1.76 16 44 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -71.21 362.36 2.20 -69.01 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 1.00 Total: 21.87 kcal Atomic # 6 Polarization: -49.73 SS G_CDS: 4.87 Total: -44.86 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -1.42 Total: -76.42 kcal Atomic # 8 Polarization: -100.97 SS G_CDS: -4.02 Total: -104.98 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 16 Polarization: 92.12 SS G_CDS: -0.27 Total: 91.85 kcal Total: -71.21 2.20 -69.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831606665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.917 kcal (2) G-P(sol) polarization free energy of solvation -71.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds