Wall clock time and date at job start Tue Mar 31 2020 16:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46493 * 120.00069 * 2 1 4 4 H 1.09003 * 110.32995 * 180.70120 * 3 2 1 5 5 C 1.54497 * 110.36679 * 58.46517 * 3 2 1 6 6 C 1.54849 * 102.01715 * 225.71815 * 5 3 2 7 7 C 1.53005 * 110.46483 * 268.13074 * 6 5 3 8 8 C 1.52996 * 110.51769 * 145.66922 * 6 5 3 9 9 O 1.45834 * 104.45522 * 26.88799 * 6 5 3 10 10 C 1.34073 * 109.90452 * 329.36365 * 9 6 5 11 11 O 1.20826 * 125.09574 * 200.83487 * 10 9 6 12 12 S 1.65603 * 120.00121 * 180.02562 * 2 1 3 13 13 O 1.42107 * 104.27417 * 26.06922 * 12 2 1 14 14 O 1.42097 * 104.27954 * 153.92369 * 12 2 1 15 15 C 1.81395 * 104.44927 * 269.99973 * 12 2 1 16 16 C 1.53002 * 109.47250 * 173.96122 * 15 12 2 17 17 C 1.50705 * 115.54476 * 65.19868 * 16 15 12 18 18 H 1.07997 * 120.00126 * 264.78278 * 17 16 15 19 19 C 1.37880 * 120.00047 * 84.78729 * 17 16 15 20 20 N 1.31513 * 119.99761 * 352.22928 * 19 17 16 21 21 Si 1.86798 * 119.99828 * 172.22650 * 19 17 16 22 22 H 1.48504 * 109.47020 * 90.00293 * 21 19 17 23 23 H 1.48502 * 109.46830 * 209.99841 * 21 19 17 24 24 H 1.48490 * 109.47571 * 329.99666 * 21 19 17 25 25 C 1.52999 * 117.50336 * 279.53299 * 16 15 12 26 26 C 1.52991 * 117.50273 * 210.86583 * 16 15 12 27 27 H 1.08995 * 109.47448 * 89.99700 * 1 2 3 28 28 H 1.09005 * 109.46868 * 209.99915 * 1 2 3 29 29 H 1.09002 * 109.47108 * 329.99351 * 1 2 3 30 30 H 1.08998 * 110.86494 * 343.86975 * 5 3 2 31 31 H 1.08997 * 110.87006 * 107.54580 * 5 3 2 32 32 H 1.09000 * 109.46940 * 176.49942 * 7 6 5 33 33 H 1.08994 * 109.47086 * 296.49660 * 7 6 5 34 34 H 1.09000 * 109.46900 * 56.49871 * 7 6 5 35 35 H 1.09010 * 109.47161 * 303.47419 * 8 6 5 36 36 H 1.09004 * 109.47149 * 63.46976 * 8 6 5 37 37 H 1.09002 * 109.47743 * 183.47344 * 8 6 5 38 38 H 1.08999 * 109.47182 * 293.96235 * 15 12 2 39 39 H 1.09005 * 109.47125 * 53.96405 * 15 12 2 40 40 H 0.97002 * 119.99961 * 185.03717 * 20 19 17 41 41 H 1.09000 * 117.49654 * 359.97438 * 25 16 15 42 42 H 1.09000 * 117.50208 * 145.01789 * 25 16 15 43 43 H 1.09002 * 117.50558 * 214.97956 * 26 16 15 44 44 H 1.09004 * 117.50119 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2719 1.0856 -0.0125 5 6 1.8103 2.1131 1.2345 6 6 1.5915 3.5137 0.6113 7 6 2.8862 4.3277 0.6572 8 6 0.4693 4.2555 1.3401 9 8 1.2094 3.2420 -0.7696 10 6 1.7927 2.1106 -1.1905 11 8 1.9689 1.8085 -2.3470 12 16 2.2930 -1.4342 -0.0006 13 8 1.3969 -2.3559 -0.6063 14 8 3.5395 -1.1189 -0.6058 15 6 2.5194 -1.8269 1.7558 16 6 3.1462 -3.2161 1.8911 17 6 4.5454 -3.3533 1.3485 18 1 4.7019 -3.7215 0.3453 19 6 5.6259 -3.0090 2.1328 20 7 5.4350 -2.4194 3.2927 21 14 7.3606 -3.3802 1.5478 22 1 7.8767 -2.2278 0.7662 23 1 8.2392 -3.6152 2.7218 24 1 7.3453 -4.5926 0.6906 25 6 2.2177 -4.4255 1.7647 26 6 2.7860 -4.0359 3.1316 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 0.8913 1.7406 1.6869 31 1 2.6221 2.1328 1.9616 32 1 2.7312 5.2851 0.1597 33 1 3.1708 4.4996 1.6952 34 1 3.6789 3.7785 0.1492 35 1 -0.4403 3.6553 1.3132 36 1 0.7606 4.4275 2.3763 37 1 0.2879 5.2121 0.8500 38 1 3.1759 -1.0861 2.2121 39 1 1.5522 -1.8142 2.2585 40 1 6.1949 -2.1113 3.8110 41 1 1.1601 -4.2316 1.5855 42 1 2.6189 -5.3207 1.2895 43 1 3.5609 -4.6749 3.5551 44 1 2.1028 -3.5854 3.8517 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831618368.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:09 Heat of formation + Delta-G solvation = -122.353538 kcal Electronic energy + Delta-G solvation = -28437.761998 eV Core-core repulsion = 24483.776774 eV Total energy + Delta-G solvation = -3953.985224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.41302 -37.80553 -36.83165 -36.41028 -36.22560 -35.14226 -33.76129 -32.09861 -30.31843 -28.26560 -27.81615 -26.51027 -25.52381 -24.30738 -21.79620 -21.27116 -20.52945 -19.61832 -18.57986 -17.50106 -16.92886 -16.63385 -16.41253 -16.20396 -15.38201 -15.24665 -14.78540 -14.60688 -14.19230 -14.06501 -13.85804 -13.82303 -13.53827 -13.16131 -12.79485 -12.69659 -12.56487 -12.35522 -12.09038 -12.02479 -11.88778 -11.74860 -11.50303 -11.35495 -11.16238 -11.10258 -11.04883 -10.97542 -10.71982 -10.63462 -10.51067 -10.49927 -10.17170 -9.78258 -9.03628 -8.95781 -8.61612 -8.15164 -6.19836 -4.30117 0.83308 1.99830 2.90844 3.20818 3.27637 3.33311 3.39207 3.79769 4.00538 4.27309 4.33235 4.37938 4.53340 4.62818 4.72325 4.87273 5.03384 5.07748 5.14578 5.20425 5.26695 5.33834 5.38896 5.42517 5.45780 5.57753 5.64357 5.71211 5.77226 5.81821 5.84272 5.96848 6.18754 6.30099 6.51638 6.53330 6.66807 6.67795 6.92375 7.17200 7.33553 7.44199 7.75382 8.14332 8.75831 9.41407 10.87753 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014557 B = 0.004533 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.073804 B = 6175.433304 C = 6717.938276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.994 5.994 3 C 0.091 3.909 4 H 0.145 0.855 5 C -0.164 4.164 6 C 0.103 3.897 7 C -0.168 4.168 8 C -0.141 4.141 9 O -0.339 6.339 10 C 0.479 3.521 11 O -0.438 6.438 12 S 2.599 3.401 13 O -0.961 6.961 14 O -0.940 6.940 15 C -0.549 4.549 16 C 0.041 3.959 17 C -0.516 4.516 18 H 0.069 0.931 19 C 0.083 3.917 20 N -0.875 5.875 21 Si 0.891 3.109 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.269 1.269 25 C -0.208 4.208 26 C -0.139 4.139 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.135 0.865 39 H 0.099 0.901 40 H 0.263 0.737 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.754 13.318 2.405 16.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.830 5.830 3 C -0.019 4.019 4 H 0.162 0.838 5 C -0.203 4.203 6 C 0.066 3.934 7 C -0.225 4.225 8 C -0.198 4.198 9 O -0.257 6.257 10 C 0.315 3.685 11 O -0.318 6.318 12 S 2.698 3.302 13 O -0.951 6.951 14 O -0.930 6.930 15 C -0.682 4.682 16 C 0.038 3.962 17 C -0.553 4.553 18 H 0.087 0.913 19 C -0.122 4.122 20 N -0.511 5.511 21 Si 0.717 3.283 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.245 4.245 26 C -0.178 4.178 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.153 0.847 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.471 12.902 1.087 16.042 hybrid contribution 0.875 0.054 0.593 1.058 sum -8.597 12.956 1.680 15.639 Atomic orbital electron populations 1.21506 0.78729 1.03046 1.02576 1.57941 1.14993 1.19838 1.90198 1.22093 1.00640 0.85789 0.93350 0.83802 1.23632 1.05552 0.93153 0.97968 1.23137 0.96541 0.95719 0.78004 1.22291 0.95424 1.00864 1.03963 1.21861 0.97065 1.00823 1.00062 1.87077 1.64693 1.42741 1.31149 1.23295 0.73960 0.80922 0.90332 1.90726 1.48244 1.72495 1.20346 1.05684 0.73431 0.72003 0.79124 1.93509 1.65270 1.61339 1.75026 1.93545 1.42991 1.81864 1.74623 1.30006 1.07310 1.09764 1.21126 1.18302 0.93749 0.83435 1.00666 1.20533 0.87980 1.46309 1.00504 0.91332 1.24939 0.99332 0.93749 0.94180 1.69973 1.31225 1.37391 1.12492 0.86588 0.83725 0.79568 0.78396 1.20000 1.21033 1.19361 1.23208 0.97564 1.01288 1.02460 1.22553 1.01417 1.04014 0.89832 0.92364 0.90177 0.91181 0.87841 0.87195 0.90891 0.89687 0.91435 0.91243 0.89826 0.91107 0.84716 0.88234 0.92723 0.90662 0.89446 0.89523 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.08 9.38 59.85 0.56 1.64 16 2 N -0.99 -15.51 3.07 -114.68 -0.35 -15.87 16 3 C 0.09 1.29 3.31 -67.99 -0.23 1.06 16 4 H 0.14 2.17 6.93 -51.93 -0.36 1.81 16 5 C -0.16 -1.55 5.68 -24.97 -0.14 -1.69 16 6 C 0.10 0.92 1.24 -89.64 -0.11 0.81 16 7 C -0.17 -1.29 8.78 37.16 0.33 -0.96 16 8 C -0.14 -0.87 8.92 37.16 0.33 -0.54 16 9 O -0.34 -4.36 10.48 -38.50 -0.40 -4.77 16 10 C 0.48 7.53 7.47 36.31 0.27 7.80 16 11 O -0.44 -8.64 18.00 -18.41 -0.33 -8.97 16 12 S 2.60 52.75 5.11 -107.50 -0.55 52.20 16 13 O -0.96 -21.27 17.09 -57.54 -0.98 -22.25 16 14 O -0.94 -22.50 16.25 -57.54 -0.93 -23.43 16 15 C -0.55 -10.90 6.03 37.16 0.22 -10.67 16 16 C 0.04 0.97 1.32 -155.66 -0.21 0.76 16 17 C -0.52 -13.82 8.18 -34.44 -0.28 -14.10 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C 0.08 2.20 5.38 -17.82 -0.10 2.11 16 20 N -0.88 -23.18 12.98 55.43 0.72 -22.46 16 21 Si 0.89 20.98 29.55 -169.99 -5.02 15.96 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.21 -4.44 9.96 -26.69 -0.27 -4.71 16 26 C -0.14 -3.05 9.49 -26.70 -0.25 -3.30 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.90 7.79 -51.93 -0.40 0.50 16 29 H 0.07 0.64 6.51 -51.93 -0.34 0.30 16 30 H 0.10 0.82 6.24 -51.93 -0.32 0.50 16 31 H 0.11 0.87 7.92 -51.93 -0.41 0.46 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 35 H 0.07 0.42 8.13 -51.92 -0.42 -0.01 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.13 2.72 8.14 -51.92 -0.42 2.29 16 39 H 0.10 1.62 8.09 -51.92 -0.42 1.20 16 40 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 41 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 43 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 376.25 15.07 5.67 5.67 Total: -1.00 -34.56 376.25 -8.93 -43.49 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.87 Total: 2.24 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 0.13 Total: -21.81 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.37 Total: -38.33 kcal Atomic # 8 Polarization: -56.77 SS G_CDS: -2.65 Total: -59.42 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 52.75 SS G_CDS: -0.55 Total: 52.20 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.56 -8.93 -43.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831618368.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.862 kcal (2) G-P(sol) polarization free energy of solvation -34.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds