Wall clock time and date at job start Tue Mar 31 2020 15:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37957 * 119.66469 * 2 1 4 4 C 1.38869 * 119.81855 * 180.25354 * 3 2 1 5 5 O 1.35008 * 120.79874 * 179.76849 * 4 3 2 6 6 C 1.34193 * 121.47582 * 179.97438 * 5 4 3 7 7 O 1.21771 * 119.16006 * 180.02562 * 6 5 4 8 8 C 1.41192 * 121.68406 * 0.04510 * 6 5 4 9 9 C 1.35708 * 119.80366 * 359.97438 * 8 6 5 10 10 C 1.50699 * 120.91215 * 179.97438 * 9 8 6 11 11 N 1.46499 * 109.47217 * 259.12579 * 10 9 8 12 12 C 1.36937 * 120.00089 * 265.89029 * 11 10 9 13 13 H 1.07990 * 120.00264 * 319.93153 * 12 11 10 14 14 C 1.38816 * 119.99695 * 139.92679 * 12 11 10 15 15 N 1.31615 * 119.99649 * 159.49699 * 14 12 11 16 16 Si 1.86798 * 120.00055 * 339.49921 * 14 12 11 17 17 H 1.48493 * 109.47481 * 95.33421 * 16 14 12 18 18 H 1.48501 * 109.47236 * 215.33269 * 16 14 12 19 19 H 1.48502 * 109.47344 * 335.33434 * 16 14 12 20 20 C 1.46500 * 119.99646 * 85.88978 * 11 10 9 21 21 C 1.50709 * 109.47127 * 84.44834 * 20 11 10 22 22 O 1.20827 * 119.99597 * 359.97438 * 21 20 11 23 23 O 1.34222 * 120.00074 * 179.97438 * 21 20 11 24 24 C 1.40616 * 119.34032 * 359.79232 * 4 3 2 25 25 C 1.39781 * 119.95458 * 359.97438 * 24 4 3 26 26 C 1.36701 * 119.72051 * 0.02562 * 25 24 4 27 27 C 1.50701 * 119.75159 * 179.97438 * 26 25 24 28 28 H 1.09000 * 109.47216 * 270.21419 * 1 2 3 29 29 H 1.09002 * 109.47082 * 30.20984 * 1 2 3 30 30 H 1.09003 * 109.47336 * 150.21398 * 1 2 3 31 31 H 1.07996 * 120.08997 * 0.02562 * 3 2 1 32 32 H 1.07998 * 120.09510 * 179.97438 * 8 6 5 33 33 H 1.08997 * 109.47158 * 19.13006 * 10 9 8 34 34 H 1.09003 * 109.46824 * 139.13098 * 10 9 8 35 35 H 0.97005 * 119.99796 * 179.97438 * 15 14 12 36 36 H 1.09001 * 109.46899 * 204.44310 * 20 11 10 37 37 H 1.08994 * 109.47819 * 324.44837 * 20 11 10 38 38 H 0.96701 * 116.99797 * 180.02562 * 23 21 20 39 39 H 1.08000 * 120.14391 * 180.02562 * 25 24 4 40 40 H 1.08997 * 109.46973 * 90.00226 * 27 26 25 41 41 H 1.08995 * 109.47360 * 329.99992 * 27 26 25 42 42 H 1.09003 * 109.46678 * 209.99956 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1898 1.1988 0.0000 4 6 3.5785 1.2025 -0.0053 5 8 4.2666 2.3640 -0.0101 6 6 5.6084 2.3835 -0.0148 7 8 6.1862 3.4554 -0.0185 8 6 6.3673 1.1929 -0.0159 9 6 5.7369 -0.0089 -0.0116 10 6 6.5222 -1.2951 -0.0132 11 7 6.5486 -1.8494 -1.3690 12 6 5.6169 -2.7791 -1.7468 13 1 5.3176 -3.5547 -1.0576 14 6 5.0569 -2.7245 -3.0159 15 7 4.4925 -3.7953 -3.5327 16 14 5.1047 -1.1314 -3.9901 17 1 6.2767 -1.1436 -4.9018 18 1 3.8587 -1.0012 -4.7875 19 1 5.2165 0.0172 -3.0555 20 6 7.5717 -1.4091 -2.3206 21 6 8.8307 -2.2106 -2.1111 22 8 8.8694 -3.0619 -1.2545 23 8 9.9090 -1.9788 -2.8761 24 6 4.2708 -0.0214 -0.0062 25 6 3.5603 -1.2252 -0.0012 26 6 2.1934 -1.2054 0.0040 27 6 1.4267 -2.5028 0.0088 28 1 -0.3634 0.0038 1.0277 29 1 -0.3633 0.8881 -0.5171 30 1 -0.3634 -0.8919 -0.5105 31 1 1.6458 2.1317 0.0004 32 1 7.4463 1.2385 -0.0201 33 1 7.5416 -1.0988 0.3190 34 1 6.0511 -2.0092 0.6622 35 1 4.1009 -3.7571 -4.4194 36 1 7.2104 -1.5594 -3.3379 37 1 7.7838 -0.3517 -2.1628 38 1 10.6930 -2.5183 -2.7048 39 1 4.0889 -2.1670 -0.0015 40 1 1.2458 -2.8140 1.0376 41 1 2.0060 -3.2691 -0.5062 42 1 0.4737 -2.3634 -0.5016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832906392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:40 Heat of formation + Delta-G solvation = -116.584307 kcal Electronic energy + Delta-G solvation = -29396.902356 eV Core-core repulsion = 25307.723353 eV Total energy + Delta-G solvation = -4089.179003 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.92022 -41.05899 -40.29262 -38.61970 -38.34688 -36.83764 -35.79358 -33.81094 -33.16112 -32.75270 -30.18952 -28.55260 -28.47545 -27.39904 -24.90517 -24.16835 -23.55289 -22.92519 -21.83049 -19.67655 -19.11163 -19.02896 -18.69975 -18.41398 -17.85209 -17.63102 -17.06747 -16.52089 -16.36169 -15.94572 -15.75612 -15.40602 -15.20145 -15.06076 -14.87994 -14.66785 -14.36623 -14.11490 -14.00398 -13.76055 -13.54196 -13.39897 -13.33477 -12.92161 -12.83137 -12.55460 -12.52392 -12.34192 -12.23192 -12.12193 -12.03349 -11.87842 -11.56438 -11.33809 -11.13248 -10.73797 -9.59455 -9.20297 -9.09470 -8.30994 -5.75775 -0.75752 0.07207 0.58722 1.18776 1.31586 1.38648 1.40480 1.44402 1.76950 2.18434 2.28119 2.69019 2.99531 3.11957 3.23820 3.37112 3.49697 3.84889 3.97236 4.09221 4.16473 4.17074 4.30661 4.35898 4.44218 4.58630 4.60536 4.70313 4.76373 4.79800 4.86151 4.94361 5.01853 5.03108 5.15964 5.20585 5.26136 5.42614 5.65049 5.73092 5.78528 5.80813 6.10874 6.12054 6.38601 6.65611 7.17479 7.39587 7.77700 8.85094 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.006043 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.161308 B = 4632.353227 C = 6045.466760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.028 4.028 3 C -0.148 4.148 4 C 0.113 3.887 5 O -0.284 6.284 6 C 0.509 3.491 7 O -0.518 6.518 8 C -0.285 4.285 9 C 0.043 3.957 10 C 0.174 3.826 11 N -0.571 5.571 12 C -0.251 4.251 13 H 0.065 0.935 14 C 0.019 3.981 15 N -0.917 5.917 16 Si 0.897 3.103 17 H -0.270 1.270 18 H -0.305 1.305 19 H -0.261 1.261 20 C 0.130 3.870 21 C 0.457 3.543 22 O -0.533 6.533 23 O -0.521 6.521 24 C -0.161 4.161 25 C -0.036 4.036 26 C -0.119 4.119 27 C -0.111 4.111 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.159 0.841 32 H 0.175 0.825 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.267 0.733 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.418 0.582 39 H 0.144 0.856 40 H 0.090 0.910 41 H 0.052 0.948 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.303 4.926 6.558 9.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.029 4.029 3 C -0.166 4.166 4 C 0.070 3.930 5 O -0.196 6.196 6 C 0.362 3.638 7 O -0.411 6.411 8 C -0.306 4.306 9 C 0.038 3.962 10 C 0.049 3.951 11 N -0.291 5.291 12 C -0.380 4.380 13 H 0.082 0.918 14 C -0.182 4.182 15 N -0.558 5.558 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.233 1.233 19 H -0.185 1.185 20 C 0.002 3.998 21 C 0.297 3.703 22 O -0.422 6.422 23 O -0.334 6.334 24 C -0.162 4.162 25 C -0.054 4.054 26 C -0.120 4.120 27 C -0.167 4.167 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.177 0.823 32 H 0.192 0.808 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.129 0.871 38 H 0.279 0.721 39 H 0.161 0.839 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.557 5.472 6.574 9.692 hybrid contribution 0.910 0.165 -0.958 1.332 sum -3.648 5.637 5.616 8.753 Atomic orbital electron populations 1.21047 0.87388 1.04533 1.04402 1.20138 0.98313 0.90408 0.94000 1.20577 0.88813 1.00443 1.06782 1.19428 0.92256 0.81492 0.99874 1.83401 1.23700 1.34680 1.77850 1.19503 0.78703 0.91062 0.74513 1.90882 1.65310 1.34446 1.50493 1.22324 1.02613 0.90084 1.15536 1.22810 0.92415 0.97702 0.83244 1.20325 0.98447 0.89349 0.86968 1.43799 1.28151 1.46320 1.10817 1.18549 1.16010 1.03912 0.99511 0.91772 1.25806 0.96543 0.97480 0.98351 1.69901 1.40456 1.28362 1.17051 0.86548 0.76813 0.84322 0.79739 1.19676 1.23269 1.18505 1.21165 0.84500 0.97915 0.96183 1.25360 0.85284 0.82097 0.77528 1.90628 1.83547 1.33371 1.34649 1.84568 1.24782 1.63757 1.60284 1.19154 0.93434 0.93430 1.10148 1.21240 0.94264 0.97230 0.92630 1.19876 0.93428 0.96735 1.01919 1.20868 1.00006 0.92453 1.03395 0.88359 0.89918 0.89596 0.82315 0.80812 0.89344 0.89348 0.92296 0.89825 0.87057 0.72077 0.83859 0.89193 0.92841 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 9.58 71.24 0.68 -1.18 16 2 C -0.03 -0.70 5.88 -19.82 -0.12 -0.82 16 3 C -0.15 -4.07 9.64 22.35 0.22 -3.85 16 4 C 0.11 3.85 6.76 23.00 0.16 4.00 16 5 O -0.28 -10.48 9.82 15.14 0.15 -10.33 16 6 C 0.51 19.24 7.89 68.55 0.54 19.78 16 7 O -0.52 -21.78 17.91 19.05 0.34 -21.44 16 8 C -0.28 -9.48 9.59 22.41 0.21 -9.27 16 9 C 0.04 1.45 5.66 -18.26 -0.10 1.35 16 10 C 0.17 5.86 5.35 85.63 0.46 6.32 16 11 N -0.57 -23.11 1.52 -710.69 -1.08 -24.19 16 12 C -0.25 -11.95 7.68 84.03 0.65 -11.30 16 13 H 0.06 3.37 7.69 -2.92 -0.02 3.34 16 14 C 0.02 0.94 5.28 84.86 0.45 1.39 16 15 N -0.92 -50.22 13.97 21.65 0.30 -49.92 16 16 Si 0.90 41.08 25.05 68.60 1.72 42.79 16 17 H -0.27 -11.83 6.71 99.48 0.67 -11.17 16 18 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 19 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 20 C 0.13 4.91 4.89 85.64 0.42 5.33 16 21 C 0.46 16.43 8.39 71.24 0.60 17.02 16 22 O -0.53 -22.21 17.16 21.96 0.38 -21.83 16 23 O -0.52 -14.57 13.42 -51.34 -0.69 -15.26 16 24 C -0.16 -5.64 5.87 -20.14 -0.12 -5.76 16 25 C -0.04 -1.21 8.38 22.28 0.19 -1.03 16 26 C -0.12 -3.43 5.84 -20.11 -0.12 -3.55 16 27 C -0.11 -2.67 9.58 71.24 0.68 -1.99 16 28 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 30 H 0.09 1.25 5.90 -2.39 -0.01 1.24 16 31 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 32 H 0.17 4.94 8.04 -2.91 -0.02 4.91 16 33 H 0.09 2.63 7.98 -2.39 -0.02 2.61 16 34 H 0.09 2.92 7.09 -2.39 -0.02 2.90 16 35 H 0.27 14.10 8.31 -92.70 -0.77 13.33 16 36 H 0.08 3.47 3.77 -2.39 -0.01 3.46 16 37 H 0.11 3.57 8.11 -2.39 -0.02 3.55 16 38 H 0.42 7.67 9.10 -74.06 -0.67 6.99 16 39 H 0.14 5.27 4.82 -2.91 -0.01 5.25 16 40 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.05 1.58 8.08 -2.39 -0.02 1.56 16 42 H 0.09 1.73 5.89 -2.39 -0.01 1.71 16 Total: -1.00 -67.77 353.25 6.29 -61.48 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.38 Total: 22.22 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 4.79 Total: 16.47 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -0.78 Total: -74.11 kcal Atomic # 8 Polarization: -69.03 SS G_CDS: 0.18 Total: -68.85 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.72 Total: 42.79 kcal Total: -67.77 6.29 -61.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832906392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.105 kcal (2) G-P(sol) polarization free energy of solvation -67.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds