Wall clock time and date at job start Tue Mar 31 2020 18:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42905 * 109.47241 * 72.91240 * 3 2 1 5 5 C 1.42901 * 114.00008 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47336 * 29.99673 * 5 4 3 7 7 C 1.53008 * 109.46864 * 269.99723 * 5 4 3 8 8 C 1.50697 * 109.46953 * 150.00161 * 5 4 3 9 9 O 1.20822 * 120.00130 * 4.99628 * 8 5 4 10 10 O 1.34235 * 119.99557 * 184.99796 * 8 5 4 11 11 C 1.45202 * 116.99633 * 179.97438 * 10 8 5 12 12 C 1.50694 * 109.46898 * 179.97438 * 11 10 8 13 13 O 1.21280 * 120.00160 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99792 * 179.97438 * 12 11 10 15 15 C 1.39243 * 119.99918 * 176.69532 * 14 12 11 16 16 C 1.39481 * 119.83418 * 217.49031 * 15 14 12 17 17 C 1.36378 * 120.16804 * 179.76412 * 16 15 14 18 18 C 1.40875 * 119.82660 * 0.51290 * 17 16 15 19 19 C 1.41144 * 120.16602 * 179.71913 * 18 17 16 20 20 H 1.07996 * 120.00469 * 157.96908 * 19 18 17 21 21 C 1.39910 * 120.00016 * 337.97360 * 19 18 17 22 22 N 1.30881 * 119.99771 * 327.61017 * 21 19 18 23 23 Si 1.86798 * 120.00216 * 147.60870 * 21 19 18 24 24 H 1.48502 * 109.46847 * 94.98758 * 23 21 19 25 25 H 1.48504 * 109.47195 * 214.98535 * 23 21 19 26 26 H 1.48500 * 109.47025 * 334.98999 * 23 21 19 27 27 C 1.40872 * 119.67245 * 359.74352 * 18 17 16 28 28 C 1.36377 * 119.82497 * 359.97438 * 27 18 17 29 29 H 4.38452 * 5.44449 * 179.97438 * 4 1 2 30 30 H 1.08997 * 109.47201 * 192.90891 * 3 2 1 31 31 H 1.09003 * 109.47673 * 312.90801 * 3 2 1 32 32 H 1.09004 * 109.47009 * 60.00031 * 7 5 4 33 33 H 1.08994 * 109.47122 * 179.97438 * 7 5 4 34 34 H 1.09001 * 109.47069 * 300.00648 * 7 5 4 35 35 H 1.09005 * 109.46973 * 300.00045 * 11 10 8 36 36 H 1.08999 * 109.47420 * 59.99488 * 11 10 8 37 37 H 0.97000 * 120.00497 * 356.70445 * 14 12 11 38 38 H 1.08000 * 119.91748 * 0.02562 * 16 15 14 39 39 H 1.07998 * 120.08755 * 180.24810 * 17 16 15 40 40 H 0.96993 * 119.99624 * 179.97438 * 22 21 19 41 41 H 1.07997 * 120.08787 * 179.97438 * 27 18 17 42 42 H 1.08007 * 119.91091 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1225 -0.3950 -1.2878 5 6 4.5471 -0.4281 -1.3955 6 1 4.9794 -0.6670 -0.4239 7 6 5.0554 0.9391 -1.8577 8 6 4.9508 -1.4790 -2.3973 9 8 4.1057 -2.0696 -3.0271 10 8 6.2495 -1.7589 -2.5897 11 6 6.5648 -2.7828 -3.5698 12 6 8.0593 -2.9587 -3.6493 13 8 8.7871 -2.2875 -2.9487 14 7 8.5873 -3.8625 -4.4984 15 6 9.9694 -3.9770 -4.6222 16 6 10.5356 -4.2298 -5.8716 17 6 11.8888 -4.3385 -6.0015 18 6 12.7145 -4.2055 -4.8679 19 6 14.1155 -4.3225 -4.9931 20 1 14.7628 -3.8856 -4.2472 21 6 14.6658 -5.0045 -6.0838 22 7 14.0284 -6.0192 -6.6103 23 14 16.3100 -4.4668 -6.7886 24 1 17.3967 -5.2793 -6.1851 25 1 16.3052 -4.6621 -8.2608 26 1 16.5352 -3.0317 -6.4803 27 6 12.1349 -3.9556 -3.6085 28 6 10.7804 -3.8437 -3.4953 29 1 -1.0500 -0.0002 0.0000 30 1 3.0088 1.0025 0.2296 31 1 3.0097 -0.6988 0.7527 32 1 4.7633 1.6992 -1.1331 33 1 6.1420 0.9140 -1.9393 34 1 4.6230 1.1781 -2.8292 35 1 6.1030 -3.7245 -3.2728 36 1 6.1822 -2.4823 -4.5452 37 1 8.0044 -4.4332 -5.0233 38 1 9.9010 -4.3356 -6.7391 39 1 12.3261 -4.5303 -6.9702 40 1 14.4098 -6.4918 -7.3666 41 1 12.7615 -3.8528 -2.7349 42 1 10.3346 -3.6525 -2.5303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837845806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:49 Heat of formation + Delta-G solvation = -99.201257 kcal Electronic energy + Delta-G solvation = -26155.164499 eV Core-core repulsion = 22066.739282 eV Total energy + Delta-G solvation = -4088.425217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.95378 -41.05452 -39.46767 -38.97064 -37.49743 -36.20246 -34.85866 -34.51524 -32.63949 -31.54918 -31.29082 -29.64110 -28.14280 -26.70754 -25.49687 -23.53490 -22.68017 -22.02720 -21.40013 -19.84058 -19.33139 -18.94081 -18.66562 -18.12053 -17.90963 -17.48545 -17.15280 -16.99072 -16.61264 -16.10896 -15.83839 -15.66418 -15.13237 -14.94699 -14.50636 -14.37616 -14.00727 -13.95211 -13.88838 -13.81828 -13.54524 -13.30534 -13.20499 -12.84382 -12.69186 -12.55891 -12.33557 -11.96600 -11.92428 -11.81922 -11.63609 -11.60204 -11.41610 -11.17622 -10.82113 -10.65817 -10.50569 -9.48620 -9.04102 -8.74541 -6.24558 0.74803 0.86591 0.95930 1.13594 1.36297 1.41560 1.53997 1.59302 1.70705 1.81066 2.19896 2.34997 2.63205 2.94065 3.46629 3.58402 3.60497 3.71662 3.82069 3.90222 4.01734 4.03117 4.24150 4.39053 4.44341 4.48195 4.68337 4.73688 4.89635 5.00560 5.07450 5.11142 5.14316 5.20050 5.25674 5.41275 5.63400 5.83308 5.85638 6.00425 6.07088 6.34199 6.50671 6.58471 6.60465 6.65915 6.88387 6.96981 7.29481 8.19450 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.042911 B = 0.001702 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.355929 B =16447.739230 C =16742.368382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.239 4.239 3 C 0.164 3.836 4 O -0.384 6.384 5 C 0.104 3.896 6 H 0.137 0.863 7 C -0.167 4.167 8 C 0.463 3.537 9 O -0.519 6.519 10 O -0.337 6.337 11 C 0.059 3.941 12 C 0.502 3.498 13 O -0.556 6.556 14 N -0.634 5.634 15 C -0.012 4.012 16 C -0.096 4.096 17 C -0.190 4.190 18 C 0.084 3.916 19 C -0.504 4.504 20 H 0.076 0.924 21 C 0.053 3.947 22 N -0.797 5.797 23 Si 0.971 3.029 24 H -0.260 1.260 25 H -0.261 1.261 26 H -0.261 1.261 27 C -0.245 4.245 28 C -0.074 4.074 29 H 0.251 0.749 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.419 0.581 38 H 0.125 0.875 39 H 0.099 0.901 40 H 0.295 0.705 41 H 0.093 0.907 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.192 9.192 7.657 23.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.239 4.239 3 C 0.090 3.910 4 O -0.304 6.304 5 C 0.045 3.955 6 H 0.154 0.846 7 C -0.224 4.224 8 C 0.306 3.694 9 O -0.406 6.406 10 O -0.253 6.253 11 C -0.018 4.018 12 C 0.289 3.711 13 O -0.434 6.434 14 N -0.281 5.281 15 C -0.105 4.105 16 C -0.116 4.116 17 C -0.210 4.210 18 C 0.081 3.919 19 C -0.531 4.531 20 H 0.094 0.906 21 C -0.167 4.167 22 N -0.420 5.420 23 Si 0.791 3.209 24 H -0.184 1.184 25 H -0.185 1.185 26 H -0.185 1.185 27 C -0.265 4.265 28 C -0.094 4.094 29 H 0.268 0.732 30 H 0.125 0.875 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.257 0.743 38 H 0.143 0.857 39 H 0.117 0.883 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -20.070 9.225 7.629 23.368 hybrid contribution 0.475 -0.493 -0.526 0.863 sum -19.595 8.732 7.103 22.598 Atomic orbital electron populations 1.25879 0.96947 0.99202 0.95939 1.23064 0.94964 1.02190 1.03667 1.19518 0.84559 1.02480 0.84476 1.88024 1.19206 1.89633 1.33531 1.21559 0.82554 0.93075 0.98289 0.84602 1.22257 1.02819 0.93850 1.03520 1.24108 0.79934 0.82609 0.82785 1.90682 1.52241 1.50571 1.47153 1.86523 1.27351 1.54467 1.56976 1.22732 0.91657 0.93098 0.94296 1.20546 0.90200 0.79688 0.80678 1.90722 1.62658 1.46840 1.43190 1.42594 1.05334 1.37075 1.43068 1.17051 0.82273 1.17525 0.93652 1.20444 0.94879 1.01298 0.94989 1.20649 0.92932 1.09595 0.97789 1.17933 0.93967 0.88635 0.91346 1.19733 0.92413 1.32236 1.08718 0.90622 1.26719 1.03161 0.91726 0.95067 1.69938 1.40814 1.12120 1.19114 0.85378 0.77073 0.80104 0.78346 1.18418 1.18495 1.18536 1.20722 0.94316 1.14886 0.96554 1.20425 0.93423 0.98689 0.96898 0.73242 0.87545 0.88542 0.87846 0.89580 0.92075 0.85703 0.85818 0.74295 0.85672 0.88320 0.89423 0.88899 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 19.25 74.32 1.43 -0.76 16 2 C -0.24 -3.95 13.73 31.12 0.43 -3.52 16 3 C 0.16 2.09 6.22 70.18 0.44 2.53 16 4 O -0.38 -7.50 9.48 -129.95 -1.23 -8.73 16 5 C 0.10 1.69 3.24 29.85 0.10 1.79 16 6 H 0.14 1.36 7.79 -2.39 -0.02 1.34 16 7 C -0.17 -2.18 9.50 71.98 0.68 -1.49 16 8 C 0.46 10.88 7.29 71.24 0.52 11.40 16 9 O -0.52 -15.11 16.26 28.39 0.46 -14.64 16 10 O -0.34 -8.57 9.75 -45.11 -0.44 -9.01 16 11 C 0.06 1.37 5.95 71.23 0.42 1.79 16 12 C 0.50 16.21 7.72 87.65 0.68 16.88 16 13 O -0.56 -23.29 14.12 15.77 0.22 -23.06 16 14 N -0.63 -20.26 5.30 -303.12 -1.61 -21.87 16 15 C -0.01 -0.52 6.25 38.56 0.24 -0.28 16 16 C -0.10 -4.21 9.90 22.14 0.22 -3.99 16 17 C -0.19 -9.65 8.74 22.48 0.20 -9.46 16 18 C 0.08 4.57 5.57 -21.28 -0.12 4.45 16 19 C -0.50 -27.16 8.94 23.39 0.21 -26.95 16 20 H 0.08 4.01 8.02 -2.91 -0.02 3.98 16 21 C 0.05 2.61 4.77 85.24 0.41 3.02 16 22 N -0.80 -39.91 11.78 21.82 0.26 -39.65 16 23 Si 0.97 36.85 29.66 68.60 2.03 38.89 16 24 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 25 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 26 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 27 C -0.24 -12.75 9.74 22.48 0.22 -12.53 16 28 C -0.07 -3.58 8.59 22.13 0.19 -3.39 16 29 H 0.25 1.29 7.80 -4.42 -0.03 1.25 16 30 H 0.11 0.74 7.87 -2.39 -0.02 0.72 16 31 H 0.10 0.84 8.08 -2.39 -0.02 0.82 16 32 H 0.10 0.78 7.87 -2.38 -0.02 0.76 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.13 2.32 8.13 -2.38 -0.02 2.30 16 36 H 0.12 2.35 8.13 -2.39 -0.02 2.33 16 37 H 0.42 9.66 8.82 -92.71 -0.82 8.84 16 38 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 39 H 0.10 5.11 6.52 -2.91 -0.02 5.09 16 40 H 0.29 13.08 8.30 -92.71 -0.77 12.32 16 41 H 0.09 4.69 8.06 -2.91 -0.02 4.66 16 42 H 0.10 4.89 6.45 -2.91 -0.02 4.87 16 Total: -1.00 -75.50 379.25 6.19 -69.31 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 0.24 Total: 29.28 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: 6.26 Total: -20.50 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: -1.35 Total: -61.52 kcal Atomic # 8 Polarization: -54.47 SS G_CDS: -0.99 Total: -55.45 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 2.03 Total: 38.89 kcal Total: -75.50 6.19 -69.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837845806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.895 kcal (2) G-P(sol) polarization free energy of solvation -75.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds