Wall clock time and date at job start Tue Mar 31 2020 18:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42895 * 109.47153 * 62.23686 * 3 2 1 5 5 C 1.42900 * 113.99837 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47360 * 329.99610 * 5 4 3 7 7 C 1.52993 * 109.47388 * 90.00074 * 5 4 3 8 8 C 1.50709 * 109.47071 * 209.99850 * 5 4 3 9 9 O 1.20821 * 119.99621 * 355.00374 * 8 5 4 10 10 O 1.34230 * 119.99634 * 174.99511 * 8 5 4 11 11 C 1.45207 * 116.99247 * 180.02562 * 10 8 5 12 12 C 1.50701 * 109.46662 * 180.02562 * 11 10 8 13 13 O 1.21289 * 120.00208 * 359.72502 * 12 11 10 14 14 N 1.34771 * 120.00034 * 179.97438 * 12 11 10 15 15 C 1.39242 * 120.00283 * 175.70147 * 14 12 11 16 16 C 1.39478 * 119.83626 * 214.99647 * 15 14 12 17 17 C 1.36371 * 120.16900 * 179.76076 * 16 15 14 18 18 C 1.40871 * 119.82814 * 0.51466 * 17 16 15 19 19 C 1.41151 * 120.16332 * 179.71947 * 18 17 16 20 20 H 1.08008 * 119.99993 * 214.80476 * 19 18 17 21 21 C 1.39908 * 120.00071 * 34.80442 * 19 18 17 22 22 N 1.30860 * 120.00207 * 355.55453 * 21 19 18 23 23 Si 1.86802 * 119.99797 * 175.55254 * 21 19 18 24 24 H 1.48502 * 109.47125 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46723 * 119.99806 * 23 21 19 26 26 H 1.48497 * 109.47173 * 239.99773 * 23 21 19 27 27 C 1.40861 * 119.67150 * 359.73935 * 18 17 16 28 28 C 1.36375 * 119.83011 * 0.02562 * 27 18 17 29 29 H 4.38441 * 5.44435 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.47094 * 302.23332 * 3 2 1 31 31 H 1.09001 * 109.46698 * 182.23741 * 3 2 1 32 32 H 1.08998 * 109.47447 * 59.99945 * 7 5 4 33 33 H 1.08997 * 109.47460 * 179.97438 * 7 5 4 34 34 H 1.09005 * 109.47473 * 299.99906 * 7 5 4 35 35 H 1.09000 * 109.47262 * 60.00533 * 11 10 8 36 36 H 1.08998 * 109.47264 * 300.00254 * 11 10 8 37 37 H 0.97002 * 120.00323 * 355.71108 * 14 12 11 38 38 H 1.08002 * 119.91712 * 0.02562 * 16 15 14 39 39 H 1.08005 * 120.08599 * 180.25484 * 17 16 15 40 40 H 0.97000 * 120.00407 * 180.02562 * 22 21 19 41 41 H 1.08001 * 120.08717 * 179.97438 * 27 18 17 42 42 H 1.08003 * 119.91537 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1227 -0.6267 -1.1921 5 6 4.5472 -0.6791 -1.2917 6 1 4.9795 0.1755 -0.7712 7 6 5.0556 -1.9743 -0.6555 8 6 4.9512 -0.6401 -2.7431 9 8 4.1061 -0.6654 -3.6062 10 8 6.2498 -0.5771 -3.0768 11 6 6.5652 -0.5420 -4.4938 12 6 8.0598 -0.4732 -4.6740 13 8 8.7873 -0.4505 -3.7038 14 7 8.5879 -0.4319 -5.9133 15 6 9.9617 -0.2781 -6.0799 16 6 10.4518 0.4598 -7.1573 17 6 11.7958 0.6188 -7.3243 18 6 12.6903 0.0264 -6.4113 19 6 14.0830 0.1815 -6.5808 20 1 14.7522 -0.6238 -6.3156 21 6 14.5965 1.3782 -7.0922 22 7 13.7825 2.3204 -7.4947 23 14 16.4442 1.6310 -7.2003 24 1 17.1399 0.4243 -6.6854 25 1 16.8306 1.8582 -8.6161 26 1 16.8308 2.8112 -6.3862 27 6 12.1879 -0.7219 -5.3288 28 6 10.8411 -0.8681 -5.1721 29 1 -1.0498 -0.0003 -0.0001 30 1 3.0096 -0.5473 0.8693 31 1 3.0089 1.0277 0.0401 32 1 4.6234 -2.8289 -1.1760 33 1 6.1422 -2.0145 -0.7318 34 1 4.7635 -2.0026 0.3943 35 1 6.1034 0.3351 -4.9472 36 1 6.1828 -1.4429 -4.9736 37 1 8.0109 -0.5091 -6.6892 38 1 9.7649 0.9100 -7.8587 39 1 12.1737 1.1939 -8.1567 40 1 14.1385 3.1500 -7.8496 41 1 12.8676 -1.1793 -4.6250 42 1 10.4544 -1.4418 -4.3428 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837845866.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:57 Heat of formation + Delta-G solvation = -77.101399 kcal Electronic energy + Delta-G solvation = -26194.916951 eV Core-core repulsion = 22107.450056 eV Total energy + Delta-G solvation = -4087.466896 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.95069 -39.68823 -38.66637 -37.34277 -36.41486 -34.50760 -33.94918 -33.01903 -31.96140 -29.86088 -29.51763 -28.18027 -27.61256 -25.21120 -24.46220 -21.84577 -21.24104 -20.82132 -19.83867 -19.21376 -17.89035 -17.80034 -17.34879 -17.16664 -16.77149 -16.28290 -16.10076 -15.93332 -15.19770 -14.87671 -14.83813 -13.99437 -13.96497 -13.70332 -13.33134 -13.11721 -12.93818 -12.69698 -12.65725 -12.52499 -12.16572 -11.87599 -11.75816 -11.42558 -11.21415 -11.17602 -11.06297 -11.02492 -10.90775 -10.77099 -10.61023 -10.09660 -10.05032 -9.54034 -9.51411 -9.20401 -8.95335 -7.59727 -6.93194 -6.65894 -4.38646 1.63110 1.88680 2.32336 2.36984 2.44355 2.92867 3.04787 3.08194 3.13383 3.23798 3.41820 3.63691 3.95424 4.08548 4.33184 4.43378 4.51698 4.65324 4.68454 4.79565 4.87795 4.94287 4.98117 5.24173 5.25314 5.45773 5.60673 5.72395 6.05392 6.14742 6.38503 6.42426 6.66287 6.84594 7.01796 7.12714 7.13990 7.24224 7.45792 7.59079 7.66593 7.79884 8.01808 8.16182 8.26670 8.54175 8.63368 8.88779 8.94534 10.25168 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.033507 B = 0.001732 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.433645 B =16157.988591 C =16334.981521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.196 4.196 3 C 0.172 3.828 4 O -0.356 6.356 5 C 0.102 3.898 6 H 0.107 0.893 7 C -0.172 4.172 8 C 0.462 3.538 9 O -0.487 6.487 10 O -0.325 6.325 11 C 0.052 3.948 12 C 0.499 3.501 13 O -0.509 6.509 14 N -0.645 5.645 15 C 0.000 4.000 16 C -0.118 4.118 17 C -0.141 4.141 18 C 0.101 3.899 19 C -0.459 4.459 20 H 0.077 0.923 21 C 0.069 3.931 22 N -0.810 5.810 23 Si 0.916 3.084 24 H -0.262 1.262 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.205 4.205 28 C -0.084 4.084 29 H 0.223 0.777 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.398 0.602 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.278 0.722 41 H 0.097 0.903 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.067 -3.589 10.340 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.196 4.196 3 C 0.096 3.904 4 O -0.275 6.275 5 C 0.043 3.957 6 H 0.125 0.875 7 C -0.229 4.229 8 C 0.303 3.697 9 O -0.373 6.373 10 O -0.241 6.241 11 C -0.025 4.025 12 C 0.284 3.716 13 O -0.384 6.384 14 N -0.289 5.289 15 C -0.092 4.092 16 C -0.138 4.138 17 C -0.161 4.161 18 C 0.098 3.902 19 C -0.490 4.490 20 H 0.095 0.905 21 C -0.146 4.146 22 N -0.438 5.438 23 Si 0.741 3.259 24 H -0.185 1.185 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.225 4.225 28 C -0.104 4.104 29 H 0.240 0.760 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.232 0.768 38 H 0.110 0.890 39 H 0.150 0.850 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.897 -3.406 10.527 21.898 hybrid contribution 0.277 0.445 -0.453 0.693 sum -18.620 -2.961 10.074 21.376 Atomic orbital electron populations 1.25003 0.95910 0.99726 0.97749 1.22358 0.93714 1.01305 1.02182 1.19209 0.85131 0.98055 0.87967 1.88068 1.18597 1.79847 1.41007 1.21364 0.82702 1.01759 0.89833 0.87533 1.22261 1.03252 0.95856 1.01547 1.23369 0.80859 0.73348 0.92170 1.90701 1.51711 1.43815 1.51069 1.86522 1.26497 1.83565 1.27486 1.22769 0.95068 1.04946 0.79728 1.19897 0.88573 0.78868 0.84263 1.90738 1.61019 1.47634 1.38980 1.42779 1.07808 1.71614 1.06722 1.17223 0.80010 1.09150 1.02819 1.20311 0.96316 0.99445 0.97712 1.21196 0.90771 1.03266 1.00903 1.17752 0.93752 0.89622 0.89059 1.19557 0.92385 0.99940 1.37129 0.90476 1.25891 1.00416 0.95624 0.92650 1.69759 1.36335 1.05742 1.31933 0.86139 0.82097 0.79203 0.78501 1.18542 1.19976 1.19962 1.20807 0.93686 1.08302 0.99736 1.20401 0.93071 0.98813 0.98097 0.76034 0.90074 0.90203 0.90933 0.89243 0.90506 0.88093 0.88224 0.76814 0.88953 0.84957 0.91130 0.88482 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 19.25 29.55 0.57 -0.68 16 2 C -0.20 -1.74 13.73 -37.12 -0.51 -2.25 16 3 C 0.17 1.26 6.22 34.37 0.21 1.47 16 4 O -0.36 -3.73 9.48 -55.14 -0.52 -4.25 16 5 C 0.10 0.93 3.24 -27.88 -0.09 0.84 16 6 H 0.11 0.69 7.79 -51.93 -0.40 0.28 16 7 C -0.17 -1.25 9.50 37.15 0.35 -0.90 16 8 C 0.46 5.75 7.29 36.01 0.26 6.01 16 9 O -0.49 -7.36 16.25 -25.46 -0.41 -7.77 16 10 O -0.33 -4.38 9.75 -45.90 -0.45 -4.83 16 11 C 0.05 0.66 5.95 36.01 0.21 0.88 16 12 C 0.50 8.39 7.74 -10.99 -0.09 8.31 16 13 O -0.51 -10.74 13.93 -14.11 -0.20 -10.94 16 14 N -0.64 -10.76 5.30 -9.74 -0.05 -10.81 16 15 C 0.00 0.00 6.30 -83.57 -0.53 -0.53 16 16 C -0.12 -2.61 9.90 -39.79 -0.39 -3.00 16 17 C -0.14 -3.56 8.62 -39.26 -0.34 -3.90 16 18 C 0.10 2.66 5.55 -106.80 -0.59 2.06 16 19 C -0.46 -12.08 9.02 -37.85 -0.34 -12.42 16 20 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 21 C 0.07 1.73 5.42 -17.34 -0.09 1.64 16 22 N -0.81 -20.80 10.60 55.55 0.59 -20.21 16 23 Si 0.92 18.75 29.56 -169.99 -5.03 13.73 16 24 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 27 C -0.21 -5.11 9.74 -39.26 -0.38 -5.49 16 28 C -0.08 -1.97 8.61 -39.79 -0.34 -2.31 16 29 H 0.22 0.81 7.80 -54.10 -0.42 0.39 16 30 H 0.08 0.38 7.87 -51.93 -0.41 -0.02 16 31 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.39 7.87 -51.93 -0.41 -0.02 16 35 H 0.10 1.10 8.13 -51.93 -0.42 0.68 16 36 H 0.10 1.05 8.13 -51.93 -0.42 0.62 16 37 H 0.40 5.00 8.82 -40.82 -0.36 4.64 16 38 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.13 3.45 6.13 -52.48 -0.32 3.12 16 40 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 41 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 42 H 0.11 2.48 6.23 -52.48 -0.33 2.15 16 LS Contribution 377.69 15.07 5.69 5.69 Total: -1.00 -34.02 377.69 -7.62 -41.63 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.15 Total: 8.03 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -2.09 Total: -10.27 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: 0.54 Total: -31.02 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -1.58 Total: -27.79 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.02 -7.62 -41.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837845866.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.467 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds