Wall clock time and date at job start Tue Mar 31 2020 18:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42896 * 109.47307 * 82.20238 * 3 2 1 5 5 C 1.42907 * 113.99836 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.46840 * 30.00391 * 5 4 3 7 7 C 1.52995 * 109.47172 * 270.00152 * 5 4 3 8 8 C 1.50697 * 109.46547 * 150.00223 * 5 4 3 9 9 O 1.20826 * 120.00679 * 5.00382 * 8 5 4 10 10 O 1.34231 * 119.99722 * 185.00426 * 8 5 4 11 11 C 1.45205 * 117.00283 * 180.02562 * 10 8 5 12 12 C 1.50692 * 109.47609 * 179.97438 * 11 10 8 13 13 O 1.21284 * 119.99565 * 4.96148 * 12 11 10 14 14 N 1.34769 * 120.00497 * 184.96713 * 12 11 10 15 15 C 1.37147 * 119.99808 * 4.31623 * 14 12 11 16 16 H 1.07997 * 119.99730 * 59.09791 * 15 14 12 17 17 C 1.38884 * 119.99883 * 239.10382 * 15 14 12 18 18 N 1.31422 * 120.00499 * 357.01000 * 17 15 14 19 19 Si 1.86799 * 119.99745 * 177.01123 * 17 15 14 20 20 H 1.48500 * 109.47192 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47082 * 120.00241 * 19 17 15 22 22 H 1.48510 * 109.47251 * 239.99723 * 19 17 15 23 23 C 1.39791 * 120.00149 * 184.32310 * 14 12 11 24 24 C 1.38964 * 120.07676 * 174.20451 * 23 14 12 25 25 C 1.38076 * 119.92119 * 179.97438 * 24 23 14 26 26 C 1.38308 * 120.07824 * 359.96930 * 25 24 23 27 27 C 1.38302 * 120.15622 * 0.05092 * 26 25 24 28 28 C 1.38084 * 120.08024 * 359.95323 * 27 26 25 29 29 H 4.38446 * 5.44550 * 180.02562 * 4 1 2 30 30 H 1.09005 * 109.47110 * 322.20060 * 3 2 1 31 31 H 1.09006 * 109.47250 * 202.20689 * 3 2 1 32 32 H 1.08998 * 109.47433 * 299.99876 * 7 5 4 33 33 H 1.08996 * 109.47174 * 60.00365 * 7 5 4 34 34 H 1.09005 * 109.46936 * 180.02562 * 7 5 4 35 35 H 1.09008 * 109.46939 * 59.99333 * 11 10 8 36 36 H 1.09006 * 109.46585 * 300.00135 * 11 10 8 37 37 H 0.97000 * 120.00596 * 184.99456 * 18 17 15 38 38 H 1.08001 * 120.04015 * 359.69396 * 24 23 14 39 39 H 1.08003 * 119.95990 * 179.97438 * 25 24 23 40 40 H 1.08005 * 119.92023 * 180.02562 * 26 25 24 41 41 H 1.08009 * 119.96282 * 179.97438 * 27 26 25 42 42 H 1.07995 * 120.04324 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1224 -0.1819 -1.3348 5 6 4.5470 -0.1960 -1.4466 6 1 4.9798 -0.5881 -0.5262 7 6 5.0542 1.2281 -1.6823 8 6 4.9513 -1.0714 -2.6047 9 8 4.1064 -1.5534 -3.3214 10 8 6.2500 -1.3157 -2.8399 11 6 6.5660 -2.1671 -3.9729 12 6 8.0606 -2.3270 -4.0799 13 8 8.7835 -1.8528 -3.2293 14 7 8.5940 -2.9967 -5.1207 15 6 7.7844 -3.4560 -6.1279 16 1 7.1809 -2.7624 -6.6944 17 6 7.7406 -4.8133 -6.4192 18 7 8.5182 -5.6503 -5.7697 19 14 6.5763 -5.4491 -7.7343 20 1 5.8145 -4.3130 -8.3123 21 1 7.3574 -6.1181 -8.8055 22 1 5.6308 -6.4220 -7.1301 23 6 9.9724 -3.2232 -5.1736 24 6 10.5098 -4.0153 -6.1810 25 6 11.8719 -4.2365 -6.2305 26 6 12.7011 -3.6703 -5.2794 27 6 12.1696 -2.8818 -4.2751 28 6 10.8085 -2.6563 -4.2194 29 1 -1.0500 0.0002 -0.0002 30 1 3.0097 -0.8112 0.6299 31 1 3.0089 0.9523 0.3884 32 1 4.6214 1.6202 -2.6026 33 1 4.7618 1.8612 -0.8447 34 1 6.1408 1.2172 -1.7680 35 1 6.1831 -1.7127 -4.8868 36 1 6.1048 -3.1448 -3.8325 37 1 8.5409 -6.5866 -6.0220 38 1 9.8625 -4.4610 -6.9217 39 1 12.2902 -4.8523 -7.0130 40 1 13.7662 -3.8446 -5.3208 41 1 12.8201 -2.4415 -3.5337 42 1 10.3941 -2.0402 -3.4352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837847053.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:01 Heat of formation + Delta-G solvation = -47.759007 kcal Electronic energy + Delta-G solvation = -27588.853509 eV Core-core repulsion = 23502.658995 eV Total energy + Delta-G solvation = -4086.194514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.51617 -39.68723 -38.42450 -37.23722 -35.97226 -35.10335 -33.76007 -32.07930 -31.71325 -29.76544 -29.53974 -27.44012 -27.41517 -25.26996 -24.48849 -21.90375 -21.27132 -20.67928 -19.64066 -18.98787 -17.98305 -17.48672 -17.19881 -16.48878 -16.09036 -16.03166 -15.69158 -15.53057 -15.22212 -14.75742 -14.39494 -14.19412 -13.63071 -13.43594 -13.11970 -12.98638 -12.89531 -12.56882 -12.48025 -12.30522 -12.18152 -11.81659 -11.64039 -11.50250 -11.38533 -11.10635 -10.97615 -10.86009 -10.84310 -10.48386 -10.35323 -10.26066 -10.04772 -9.83318 -9.26621 -8.83147 -8.25454 -7.80595 -6.98836 -6.34654 -4.71346 1.94955 2.31396 2.36301 2.52407 2.56408 2.67923 2.99852 3.10138 3.13442 3.58453 3.69082 3.89526 4.21279 4.33853 4.62310 4.65991 4.72890 4.86862 4.96158 5.06162 5.09054 5.44431 5.46566 5.53220 5.60913 5.73114 5.84467 5.87108 5.94357 6.03387 6.15227 6.61188 6.67766 6.70000 6.73176 6.86764 7.12053 7.16462 7.28200 7.49486 7.58270 7.67424 7.73458 7.92077 7.99757 8.37084 8.72946 9.08643 9.46171 10.36891 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014341 B = 0.003007 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.950013 B = 9310.605613 C =10952.170982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.192 4.192 3 C 0.171 3.829 4 O -0.355 6.355 5 C 0.102 3.898 6 H 0.104 0.896 7 C -0.170 4.170 8 C 0.458 3.542 9 O -0.487 6.487 10 O -0.334 6.334 11 C 0.073 3.927 12 C 0.498 3.502 13 O -0.548 6.548 14 N -0.378 5.378 15 C -0.380 4.380 16 H 0.097 0.903 17 C 0.056 3.944 18 N -0.839 5.839 19 Si 0.919 3.081 20 H -0.263 1.263 21 H -0.275 1.275 22 H -0.275 1.275 23 C 0.178 3.822 24 C -0.089 4.089 25 C -0.128 4.128 26 C -0.169 4.169 27 C -0.124 4.124 28 C -0.191 4.191 29 H 0.222 0.778 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.276 0.724 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.603 8.385 7.634 13.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.193 4.193 3 C 0.096 3.904 4 O -0.274 6.274 5 C 0.043 3.957 6 H 0.122 0.878 7 C -0.228 4.228 8 C 0.298 3.702 9 O -0.373 6.373 10 O -0.250 6.250 11 C -0.003 4.003 12 C 0.289 3.711 13 O -0.430 6.430 14 N -0.088 5.088 15 C -0.507 4.507 16 H 0.115 0.885 17 C -0.154 4.154 18 N -0.471 5.471 19 Si 0.744 3.256 20 H -0.187 1.187 21 H -0.201 1.201 22 H -0.201 1.201 23 C 0.083 3.917 24 C -0.110 4.110 25 C -0.147 4.147 26 C -0.188 4.188 27 C -0.143 4.143 28 C -0.210 4.210 29 H 0.239 0.761 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.087 0.913 38 H 0.155 0.845 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.688 8.205 7.712 13.097 hybrid contribution -0.594 -0.901 -0.718 1.296 sum -7.283 7.304 6.994 12.462 Atomic orbital electron populations 1.24973 0.95887 1.00650 0.97265 1.22397 0.93759 1.00784 1.02316 1.19201 0.85066 1.01648 0.84529 1.88081 1.18874 1.93880 1.26608 1.21360 0.82405 0.95655 0.96276 0.87796 1.22242 1.03231 0.93586 1.03723 1.23205 0.81310 0.79871 0.85774 1.90702 1.51870 1.47802 1.46924 1.86432 1.25926 1.63679 1.48936 1.22628 0.95360 0.95238 0.87080 1.20210 0.88614 0.80895 0.81417 1.90231 1.60222 1.51068 1.41527 1.40793 1.03647 1.46547 1.17805 1.19477 1.25031 0.91774 1.14391 0.88528 1.25717 0.96078 0.96104 0.97541 1.70036 1.34515 1.04880 1.37661 0.85972 0.80212 0.79475 0.79941 1.18650 1.20063 1.20055 1.18288 0.83200 0.95425 0.94826 1.21096 0.93831 0.96600 0.99471 1.20781 0.93668 1.01093 0.99189 1.20813 0.98291 1.02079 0.97636 1.20843 0.95130 0.99943 0.98387 1.22761 0.93020 1.03469 1.01746 0.76091 0.90290 0.90229 0.90980 0.90810 0.89304 0.88323 0.87904 0.91297 0.84512 0.87765 0.88195 0.87715 0.80990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 19.25 29.55 0.57 -1.00 16 2 C -0.19 -2.08 13.73 -37.12 -0.51 -2.59 16 3 C 0.17 1.61 6.22 34.37 0.21 1.82 16 4 O -0.36 -4.67 9.48 -55.14 -0.52 -5.19 16 5 C 0.10 1.22 3.24 -27.89 -0.09 1.13 16 6 H 0.10 0.95 7.79 -51.93 -0.40 0.55 16 7 C -0.17 -1.65 9.50 37.16 0.35 -1.30 16 8 C 0.46 7.61 7.29 36.00 0.26 7.88 16 9 O -0.49 -9.64 16.26 -25.46 -0.41 -10.05 16 10 O -0.33 -6.10 9.75 -45.89 -0.45 -6.55 16 11 C 0.07 1.47 4.85 36.00 0.17 1.65 16 12 C 0.50 11.62 7.65 -10.99 -0.08 11.53 16 13 O -0.55 -13.31 12.90 -14.06 -0.18 -13.49 16 14 N -0.38 -9.31 2.64 -58.98 -0.16 -9.46 16 15 C -0.38 -9.10 7.48 -14.93 -0.11 -9.21 16 16 H 0.10 2.21 7.66 -52.49 -0.40 1.80 16 17 C 0.06 1.32 4.04 -17.49 -0.07 1.25 16 18 N -0.84 -21.14 10.71 55.49 0.59 -20.54 16 19 Si 0.92 18.46 29.56 -169.99 -5.02 13.44 16 20 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 23 C 0.18 4.42 6.04 -83.69 -0.51 3.91 16 24 C -0.09 -2.11 7.72 -39.37 -0.30 -2.42 16 25 C -0.13 -2.67 10.04 -39.62 -0.40 -3.07 16 26 C -0.17 -3.32 10.04 -39.53 -0.40 -3.71 16 27 C -0.12 -2.55 10.04 -39.61 -0.40 -2.95 16 28 C -0.19 -4.45 9.05 -39.37 -0.36 -4.81 16 29 H 0.22 1.17 7.80 -54.09 -0.42 0.75 16 30 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 31 H 0.08 0.53 7.87 -51.93 -0.41 0.12 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.52 7.87 -51.93 -0.41 0.11 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.10 1.89 7.75 -51.92 -0.40 1.48 16 36 H 0.10 2.10 8.13 -51.93 -0.42 1.68 16 37 H 0.28 6.56 8.32 -40.82 -0.34 6.23 16 38 H 0.14 3.36 5.11 -52.49 -0.27 3.09 16 39 H 0.10 1.89 8.06 -52.48 -0.42 1.47 16 40 H 0.10 1.65 8.06 -52.48 -0.42 1.22 16 41 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 42 H 0.17 4.15 4.52 -56.32 -0.25 3.90 16 LS Contribution 370.17 15.07 5.58 5.58 Total: -1.00 -31.17 370.17 -7.29 -38.46 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -5.06 Total: 9.70 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.65 Total: -1.88 kcal Atomic # 7 Polarization: -30.44 SS G_CDS: 0.44 Total: -30.00 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -1.57 Total: -35.29 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.44 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.17 -7.29 -38.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837847053.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.301 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds