Wall clock time and date at job start Tue Mar 31 2020 18:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42896 * 109.47307 * 82.20238 * 3 2 1 5 5 C 1.42907 * 113.99836 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.46840 * 30.00391 * 5 4 3 7 7 C 1.52995 * 109.47172 * 270.00152 * 5 4 3 8 8 C 1.50697 * 109.46547 * 150.00223 * 5 4 3 9 9 O 1.20826 * 120.00679 * 5.00382 * 8 5 4 10 10 O 1.34231 * 119.99722 * 185.00426 * 8 5 4 11 11 C 1.45205 * 117.00283 * 180.02562 * 10 8 5 12 12 C 1.50692 * 109.47609 * 179.97438 * 11 10 8 13 13 O 1.21284 * 119.99565 * 4.96148 * 12 11 10 14 14 N 1.34769 * 120.00497 * 184.96713 * 12 11 10 15 15 C 1.37147 * 119.99808 * 4.31623 * 14 12 11 16 16 H 1.07997 * 119.99730 * 59.09791 * 15 14 12 17 17 C 1.38884 * 119.99883 * 239.10382 * 15 14 12 18 18 N 1.31422 * 120.00499 * 357.01000 * 17 15 14 19 19 Si 1.86799 * 119.99745 * 177.01123 * 17 15 14 20 20 H 1.48500 * 109.47192 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47082 * 120.00241 * 19 17 15 22 22 H 1.48510 * 109.47251 * 239.99723 * 19 17 15 23 23 C 1.39791 * 120.00149 * 184.32310 * 14 12 11 24 24 C 1.38964 * 120.07676 * 174.20451 * 23 14 12 25 25 C 1.38076 * 119.92119 * 179.97438 * 24 23 14 26 26 C 1.38308 * 120.07824 * 359.96930 * 25 24 23 27 27 C 1.38302 * 120.15622 * 0.05092 * 26 25 24 28 28 C 1.38084 * 120.08024 * 359.95323 * 27 26 25 29 29 H 4.38446 * 5.44550 * 180.02562 * 4 1 2 30 30 H 1.09005 * 109.47110 * 322.20060 * 3 2 1 31 31 H 1.09006 * 109.47250 * 202.20689 * 3 2 1 32 32 H 1.08998 * 109.47433 * 299.99876 * 7 5 4 33 33 H 1.08996 * 109.47174 * 60.00365 * 7 5 4 34 34 H 1.09005 * 109.46936 * 180.02562 * 7 5 4 35 35 H 1.09008 * 109.46939 * 59.99333 * 11 10 8 36 36 H 1.09006 * 109.46585 * 300.00135 * 11 10 8 37 37 H 0.97000 * 120.00596 * 184.99456 * 18 17 15 38 38 H 1.08001 * 120.04015 * 359.69396 * 24 23 14 39 39 H 1.08003 * 119.95990 * 179.97438 * 25 24 23 40 40 H 1.08005 * 119.92023 * 180.02562 * 26 25 24 41 41 H 1.08009 * 119.96282 * 179.97438 * 27 26 25 42 42 H 1.07995 * 120.04324 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1224 -0.1819 -1.3348 5 6 4.5470 -0.1960 -1.4466 6 1 4.9798 -0.5881 -0.5262 7 6 5.0542 1.2281 -1.6823 8 6 4.9513 -1.0714 -2.6047 9 8 4.1064 -1.5534 -3.3214 10 8 6.2500 -1.3157 -2.8399 11 6 6.5660 -2.1671 -3.9729 12 6 8.0606 -2.3270 -4.0799 13 8 8.7835 -1.8528 -3.2293 14 7 8.5940 -2.9967 -5.1207 15 6 7.7844 -3.4560 -6.1279 16 1 7.1809 -2.7624 -6.6944 17 6 7.7406 -4.8133 -6.4192 18 7 8.5182 -5.6503 -5.7697 19 14 6.5763 -5.4491 -7.7343 20 1 5.8145 -4.3130 -8.3123 21 1 7.3574 -6.1181 -8.8055 22 1 5.6308 -6.4220 -7.1301 23 6 9.9724 -3.2232 -5.1736 24 6 10.5098 -4.0153 -6.1810 25 6 11.8719 -4.2365 -6.2305 26 6 12.7011 -3.6703 -5.2794 27 6 12.1696 -2.8818 -4.2751 28 6 10.8085 -2.6563 -4.2194 29 1 -1.0500 0.0002 -0.0002 30 1 3.0097 -0.8112 0.6299 31 1 3.0089 0.9523 0.3884 32 1 4.6214 1.6202 -2.6026 33 1 4.7618 1.8612 -0.8447 34 1 6.1408 1.2172 -1.7680 35 1 6.1831 -1.7127 -4.8868 36 1 6.1048 -3.1448 -3.8325 37 1 8.5409 -6.5866 -6.0220 38 1 9.8625 -4.4610 -6.9217 39 1 12.2902 -4.8523 -7.0130 40 1 13.7662 -3.8446 -5.3208 41 1 12.8201 -2.4415 -3.5337 42 1 10.3941 -2.0402 -3.4352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837847053.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:00 Heat of formation + Delta-G solvation = -63.615955 kcal Electronic energy + Delta-G solvation = -27589.541118 eV Core-core repulsion = 23502.658995 eV Total energy + Delta-G solvation = -4086.882123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.96998 -41.33360 -39.46698 -38.87266 -37.45245 -36.89122 -34.51171 -33.91429 -32.63844 -31.41856 -31.20562 -29.04369 -28.13366 -27.08860 -25.58224 -23.54894 -22.93284 -21.96621 -21.41971 -19.82321 -19.69483 -18.68087 -18.35495 -17.90440 -17.60287 -17.49753 -17.17753 -16.82847 -16.56033 -16.23936 -15.90187 -15.54143 -15.03410 -14.77132 -14.59453 -14.51125 -14.04232 -13.99209 -13.91764 -13.67553 -13.43879 -13.31058 -13.15992 -13.10102 -12.78905 -12.54947 -12.46925 -12.09024 -11.91465 -11.80987 -11.72257 -11.62763 -11.38705 -11.04738 -10.65529 -10.60798 -10.04024 -9.51008 -8.78604 -8.14076 -6.58481 0.64311 0.84917 0.90256 0.99748 1.38688 1.43341 1.54997 1.65093 1.81106 1.83704 2.20835 2.65708 2.85417 2.97566 3.34794 3.50644 3.59736 3.78466 3.82614 3.92286 4.11187 4.19694 4.24600 4.35140 4.41021 4.44732 4.61868 4.69615 4.75974 4.96751 5.00234 5.03191 5.13950 5.17384 5.24503 5.31910 5.44268 5.81045 5.85943 5.88725 5.92271 6.02658 6.19710 6.55082 6.58572 6.61855 6.89719 7.28041 7.64585 8.56793 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014341 B = 0.003007 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.950013 B = 9310.605613 C =10952.170982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.239 4.239 3 C 0.163 3.837 4 O -0.385 6.385 5 C 0.108 3.892 6 H 0.138 0.862 7 C -0.165 4.165 8 C 0.454 3.546 9 O -0.525 6.525 10 O -0.337 6.337 11 C 0.084 3.916 12 C 0.487 3.513 13 O -0.564 6.564 14 N -0.390 5.390 15 C -0.392 4.392 16 H 0.101 0.899 17 C 0.023 3.977 18 N -0.870 5.870 19 Si 0.982 3.018 20 H -0.256 1.256 21 H -0.269 1.269 22 H -0.279 1.279 23 C 0.145 3.855 24 C -0.109 4.109 25 C -0.129 4.129 26 C -0.159 4.159 27 C -0.123 4.123 28 C -0.213 4.213 29 H 0.253 0.747 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.277 0.723 38 H 0.121 0.879 39 H 0.132 0.868 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.187 8.893 8.191 13.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.239 4.239 3 C 0.089 3.911 4 O -0.306 6.306 5 C 0.050 3.950 6 H 0.155 0.845 7 C -0.222 4.222 8 C 0.297 3.703 9 O -0.413 6.413 10 O -0.253 6.253 11 C 0.007 3.993 12 C 0.278 3.722 13 O -0.449 6.449 14 N -0.100 5.100 15 C -0.518 4.518 16 H 0.119 0.881 17 C -0.184 4.184 18 N -0.502 5.502 19 Si 0.804 3.196 20 H -0.180 1.180 21 H -0.194 1.194 22 H -0.205 1.205 23 C 0.049 3.951 24 C -0.130 4.130 25 C -0.148 4.148 26 C -0.178 4.178 27 C -0.141 4.141 28 C -0.232 4.232 29 H 0.269 0.731 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.078 0.922 33 H 0.127 0.873 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.139 0.861 39 H 0.150 0.850 40 H 0.160 0.840 41 H 0.155 0.845 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.263 8.734 8.278 13.566 hybrid contribution -0.702 -1.034 -0.838 1.505 sum -6.965 7.699 7.440 12.773 Atomic orbital electron populations 1.25878 0.96919 0.99451 0.95661 1.23072 0.94971 1.02086 1.03793 1.19539 0.84643 1.03884 0.83065 1.88032 1.19214 1.94155 1.29156 1.21560 0.82546 0.95825 0.95107 0.84511 1.22250 1.02896 0.92396 1.04642 1.24377 0.80053 0.79389 0.86459 1.90676 1.52456 1.49520 1.48631 1.86457 1.27418 1.63277 1.48114 1.22338 0.93301 0.95402 0.88234 1.20651 0.89797 0.80593 0.81118 1.90207 1.60925 1.51749 1.42002 1.41013 1.04066 1.46701 1.18184 1.19733 1.25164 0.92321 1.14599 0.88141 1.26402 0.96921 0.95912 0.99166 1.70141 1.35891 1.05092 1.39108 0.85039 0.78184 0.78763 0.77626 1.17994 1.19367 1.20470 1.18659 0.83592 0.96777 0.96028 1.21111 0.95148 0.97385 0.99384 1.21152 0.92675 1.00862 1.00103 1.21247 1.00234 1.00239 0.96104 1.21227 0.94241 0.99457 0.99177 1.22798 0.94522 1.04233 1.01660 0.73116 0.88714 0.87221 0.92215 0.87325 0.89455 0.87770 0.88676 0.91252 0.86083 0.85033 0.84012 0.84532 0.82185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 19.25 74.32 1.43 -1.33 16 2 C -0.24 -4.91 13.73 31.13 0.43 -4.48 16 3 C 0.16 2.80 6.22 70.18 0.44 3.24 16 4 O -0.39 -9.80 9.48 -129.95 -1.23 -11.03 16 5 C 0.11 2.47 3.24 29.85 0.10 2.57 16 6 H 0.14 2.20 7.79 -2.39 -0.02 2.18 16 7 C -0.16 -2.93 9.50 71.98 0.68 -2.25 16 8 C 0.45 15.30 7.29 71.24 0.52 15.81 16 9 O -0.52 -21.37 16.26 28.38 0.46 -20.91 16 10 O -0.34 -12.60 9.75 -45.09 -0.44 -13.04 16 11 C 0.08 3.51 4.85 71.23 0.35 3.86 16 12 C 0.49 23.62 7.65 87.66 0.67 24.29 16 13 O -0.56 -28.41 12.90 15.71 0.20 -28.21 16 14 N -0.39 -19.87 2.64 -458.91 -1.21 -21.08 16 15 C -0.39 -19.32 7.48 84.02 0.63 -18.69 16 16 H 0.10 4.72 7.66 -2.91 -0.02 4.70 16 17 C 0.02 1.12 4.04 84.91 0.34 1.46 16 18 N -0.87 -44.76 10.71 21.65 0.23 -44.53 16 19 Si 0.98 38.25 29.56 68.60 2.03 40.28 16 20 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 21 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 22 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 23 C 0.14 7.34 6.04 38.22 0.23 7.57 16 24 C -0.11 -5.23 7.72 22.41 0.17 -5.06 16 25 C -0.13 -5.17 10.04 22.25 0.22 -4.95 16 26 C -0.16 -5.79 10.04 22.30 0.22 -5.56 16 27 C -0.12 -4.81 10.04 22.25 0.22 -4.58 16 28 C -0.21 -10.04 9.05 22.41 0.20 -9.84 16 29 H 0.25 2.10 7.80 -4.42 -0.03 2.06 16 30 H 0.10 1.27 8.09 -2.38 -0.02 1.25 16 31 H 0.11 1.15 7.87 -2.38 -0.02 1.13 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.11 1.18 7.87 -2.39 -0.02 1.16 16 34 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.10 4.17 7.75 -2.38 -0.02 4.16 16 36 H 0.10 4.09 8.13 -2.38 -0.02 4.07 16 37 H 0.28 13.42 8.32 -92.71 -0.77 12.65 16 38 H 0.12 6.08 5.11 -2.91 -0.01 6.07 16 39 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 40 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 41 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 42 H 0.16 7.94 4.52 -63.50 -0.29 7.65 16 Total: -1.00 -70.15 370.17 7.67 -62.48 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: 0.77 Total: 33.96 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 6.86 Total: 2.07 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: -0.98 Total: -65.61 kcal Atomic # 8 Polarization: -72.18 SS G_CDS: -1.01 Total: -73.19 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -70.15 7.67 -62.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837847053.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.133 kcal (2) G-P(sol) polarization free energy of solvation -70.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds