Wall clock time and date at job start Tue Mar 31 2020 18:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42904 * 109.47071 * 262.40772 * 3 2 1 5 5 C 1.42898 * 114.00132 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47473 * 330.00932 * 5 4 3 7 7 C 1.52999 * 109.46684 * 90.00679 * 5 4 3 8 8 C 1.50696 * 109.47465 * 210.00286 * 5 4 3 9 9 O 1.20828 * 120.00019 * 355.00486 * 8 5 4 10 10 O 1.34233 * 120.00142 * 175.00378 * 8 5 4 11 11 C 1.45200 * 116.99875 * 180.02562 * 10 8 5 12 12 C 1.50699 * 109.46910 * 179.97438 * 11 10 8 13 13 O 1.21282 * 120.00163 * 4.97627 * 12 11 10 14 14 N 1.34783 * 120.00032 * 184.97604 * 12 11 10 15 15 C 1.37136 * 120.00011 * 4.58711 * 14 12 11 16 16 H 1.08005 * 119.99474 * 311.70725 * 15 14 12 17 17 C 1.38881 * 120.00187 * 131.70550 * 15 14 12 18 18 N 1.31422 * 120.00056 * 352.02591 * 17 15 14 19 19 Si 1.86799 * 120.00267 * 172.02438 * 17 15 14 20 20 H 1.48502 * 109.46939 * 60.00003 * 19 17 15 21 21 H 1.48500 * 109.47260 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47404 * 300.00285 * 19 17 15 23 23 C 1.39790 * 119.99651 * 184.58482 * 14 12 11 24 24 C 1.38962 * 120.07085 * 172.06215 * 23 14 12 25 25 C 1.38085 * 119.91753 * 180.23266 * 24 23 14 26 26 C 1.38311 * 120.07844 * 359.47693 * 25 24 23 27 27 C 1.38311 * 120.15482 * 0.54699 * 26 25 24 28 28 C 1.38082 * 120.07765 * 359.70627 * 27 26 25 29 29 H 4.38443 * 5.44499 * 179.97438 * 4 1 2 30 30 H 1.09003 * 109.47090 * 142.41445 * 3 2 1 31 31 H 1.08998 * 109.47346 * 22.41018 * 3 2 1 32 32 H 1.08996 * 109.47384 * 59.99908 * 7 5 4 33 33 H 1.09004 * 109.47148 * 180.02562 * 7 5 4 34 34 H 1.09003 * 109.47211 * 299.99670 * 7 5 4 35 35 H 1.09000 * 109.47475 * 59.99864 * 11 10 8 36 36 H 1.08999 * 109.47119 * 299.99706 * 11 10 8 37 37 H 0.97003 * 120.00634 * 185.01140 * 18 17 15 38 38 H 1.07995 * 120.04514 * 359.96373 * 24 23 14 39 39 H 1.08006 * 119.96156 * 179.75187 * 25 24 23 40 40 H 1.08003 * 119.92239 * 180.25406 * 26 25 24 41 41 H 1.07994 * 119.96000 * 179.72467 * 27 26 25 42 42 H 1.07997 * 120.03878 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1222 0.1789 1.3355 5 6 4.5467 0.1939 1.4475 6 1 4.9794 -0.4289 0.6644 7 6 5.0550 1.6291 1.2968 8 6 4.9503 -0.3428 2.7965 9 8 4.1050 -0.6167 3.6153 10 8 6.2489 -0.5167 3.0886 11 6 6.5640 -1.0380 4.4067 12 6 8.0585 -1.1656 4.5523 13 8 8.7900 -0.7649 3.6717 14 7 8.5823 -1.7250 5.6610 15 6 7.7555 -2.2629 6.6138 16 1 6.9064 -1.6997 6.9721 17 6 8.0100 -3.5317 7.1179 18 7 8.9446 -4.2793 6.5748 19 14 7.0239 -4.1759 8.5677 20 1 5.5835 -4.2148 8.2086 21 1 7.4860 -5.5446 8.9117 22 1 7.2187 -3.2801 9.7360 23 6 9.9684 -1.7569 5.8397 24 6 10.5049 -2.1811 7.0494 25 6 11.8744 -2.2068 7.2241 26 6 12.7121 -1.8214 6.1932 27 6 12.1815 -1.3982 4.9880 28 6 10.8128 -1.3650 4.8081 29 1 -1.0500 0.0002 0.0000 30 1 3.0090 0.8152 -0.6268 31 1 3.0098 -0.9492 -0.3918 32 1 4.6224 2.2518 2.0798 33 1 6.1417 1.6405 1.3817 34 1 4.7631 2.0173 0.3209 35 1 6.1023 -2.0176 4.5300 36 1 6.1813 -0.3576 5.1675 37 1 9.0735 -5.1915 6.8785 38 1 9.8516 -2.4861 7.8534 39 1 12.2921 -2.5325 8.1653 40 1 13.7830 -1.8464 6.3312 41 1 12.8384 -1.0937 4.1867 42 1 10.3992 -1.0341 3.8670 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837847061.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:17 Heat of formation + Delta-G solvation = -65.477364 kcal Electronic energy + Delta-G solvation = -27568.775747 eV Core-core repulsion = 23481.812907 eV Total energy + Delta-G solvation = -4086.962840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 5.24 seconds Orbital eigenvalues (eV) -41.97158 -41.33840 -39.46884 -38.87169 -37.45229 -36.88129 -34.51057 -33.87274 -32.63885 -31.44921 -31.22626 -29.03691 -28.13347 -27.12302 -25.58855 -23.55291 -22.93892 -21.97217 -21.39851 -19.81868 -19.75028 -18.68842 -18.32571 -17.94722 -17.64250 -17.37247 -17.15553 -16.80229 -16.57343 -16.30283 -15.89134 -15.56391 -15.03520 -14.78466 -14.56894 -14.54414 -14.05360 -13.95592 -13.91782 -13.65766 -13.43555 -13.28007 -13.17000 -13.05502 -12.75903 -12.54749 -12.46431 -12.17357 -11.91247 -11.80935 -11.75015 -11.62618 -11.38672 -11.19957 -10.65530 -10.62672 -10.04940 -9.51029 -8.75862 -8.23228 -6.44534 0.64132 0.83883 0.89795 0.99620 1.39809 1.43659 1.52089 1.64816 1.81262 1.85097 2.21783 2.64863 2.87954 2.97293 3.36213 3.50108 3.59835 3.78235 3.82611 3.92262 4.07493 4.20510 4.24717 4.34351 4.37517 4.44818 4.60833 4.69669 4.75757 4.94054 4.99110 5.00428 5.12122 5.17069 5.23682 5.30167 5.42484 5.77138 5.84603 5.85948 5.89391 5.99442 6.19592 6.54703 6.58685 6.61096 6.89911 7.28542 7.63823 8.58596 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.002955 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.275495 B = 9474.336598 C =11079.222209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.239 4.239 3 C 0.163 3.837 4 O -0.385 6.385 5 C 0.108 3.892 6 H 0.137 0.863 7 C -0.165 4.165 8 C 0.455 3.545 9 O -0.525 6.525 10 O -0.337 6.337 11 C 0.081 3.919 12 C 0.479 3.521 13 O -0.566 6.566 14 N -0.388 5.388 15 C -0.395 4.395 16 H 0.105 0.895 17 C 0.023 3.977 18 N -0.869 5.869 19 Si 0.982 3.018 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.260 1.260 23 C 0.157 3.843 24 C -0.113 4.113 25 C -0.124 4.124 26 C -0.162 4.162 27 C -0.119 4.119 28 C -0.211 4.211 29 H 0.253 0.747 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.277 0.723 38 H 0.110 0.890 39 H 0.133 0.867 40 H 0.142 0.858 41 H 0.136 0.864 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.795 6.808 -9.458 13.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.239 4.239 3 C 0.089 3.911 4 O -0.305 6.305 5 C 0.049 3.951 6 H 0.154 0.846 7 C -0.222 4.222 8 C 0.298 3.702 9 O -0.413 6.413 10 O -0.252 6.252 11 C 0.005 3.995 12 C 0.271 3.729 13 O -0.450 6.450 14 N -0.097 5.097 15 C -0.521 4.521 16 H 0.122 0.878 17 C -0.184 4.184 18 N -0.501 5.501 19 Si 0.804 3.196 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.184 1.184 23 C 0.061 3.939 24 C -0.134 4.134 25 C -0.143 4.143 26 C -0.181 4.181 27 C -0.138 4.138 28 C -0.231 4.231 29 H 0.269 0.731 30 H 0.128 0.872 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.128 0.872 39 H 0.151 0.849 40 H 0.160 0.840 41 H 0.154 0.846 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.736 6.753 -9.420 13.406 hybrid contribution -0.647 -0.942 0.971 1.499 sum -7.383 5.811 -8.450 12.636 Atomic orbital electron populations 1.25879 0.96915 0.99431 0.95663 1.23069 0.94964 1.02104 1.03792 1.19537 0.84656 1.03704 0.83233 1.88030 1.19199 1.94024 1.29276 1.21556 0.82557 1.00303 0.90649 0.84555 1.22250 1.02874 0.92009 1.05047 1.24361 0.80038 0.74611 0.91208 1.90673 1.52398 1.47501 1.50695 1.86461 1.27425 1.75906 1.35439 1.22382 0.93270 1.01522 0.82322 1.20575 0.89965 0.80783 0.81615 1.90224 1.60441 1.53087 1.41270 1.41079 1.03864 1.48076 1.16691 1.19749 1.11315 1.00673 1.20400 0.87793 1.26294 0.96348 0.95589 1.00212 1.70095 1.30554 1.08504 1.40963 0.85156 0.78680 0.77635 0.78115 1.18837 1.20380 1.18389 1.18413 0.83400 0.97418 0.94672 1.20818 0.95384 1.00693 0.96507 1.21112 0.92438 1.00836 0.99882 1.21220 1.00139 1.03065 0.93658 1.21219 0.94115 1.00276 0.98182 1.22688 0.94392 1.04798 1.01196 0.73108 0.87239 0.88722 0.92189 0.89491 0.87352 0.88259 0.87830 0.91329 0.87200 0.84907 0.83996 0.84576 0.82435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 19.25 74.32 1.43 -1.31 16 2 C -0.24 -4.90 13.73 31.12 0.43 -4.47 16 3 C 0.16 2.80 6.22 70.18 0.44 3.23 16 4 O -0.39 -9.75 9.48 -129.95 -1.23 -10.98 16 5 C 0.11 2.46 3.24 29.85 0.10 2.56 16 6 H 0.14 2.20 7.79 -2.39 -0.02 2.18 16 7 C -0.16 -2.93 9.50 71.98 0.68 -2.25 16 8 C 0.45 15.21 7.29 71.23 0.52 15.73 16 9 O -0.52 -21.13 16.26 28.38 0.46 -20.67 16 10 O -0.34 -12.53 9.75 -45.11 -0.44 -12.97 16 11 C 0.08 3.37 4.71 71.24 0.34 3.70 16 12 C 0.48 23.16 7.65 87.66 0.67 23.83 16 13 O -0.57 -28.57 12.92 15.71 0.20 -28.36 16 14 N -0.39 -19.77 2.70 -458.89 -1.24 -21.01 16 15 C -0.40 -19.51 7.65 84.02 0.64 -18.87 16 16 H 0.10 4.81 7.55 -2.91 -0.02 4.79 16 17 C 0.02 1.12 3.62 84.91 0.31 1.43 16 18 N -0.87 -45.28 11.12 21.65 0.24 -45.04 16 19 Si 0.98 38.20 29.56 68.60 2.03 40.23 16 20 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 21 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 22 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 23 C 0.16 7.97 5.72 38.22 0.22 8.19 16 24 C -0.11 -5.37 7.56 22.41 0.17 -5.20 16 25 C -0.12 -4.95 10.04 22.25 0.22 -4.73 16 26 C -0.16 -5.92 10.04 22.30 0.22 -5.69 16 27 C -0.12 -4.74 10.04 22.25 0.22 -4.51 16 28 C -0.21 -10.09 9.04 22.41 0.20 -9.88 16 29 H 0.25 2.07 7.80 -4.42 -0.03 2.04 16 30 H 0.11 1.15 7.87 -2.39 -0.02 1.13 16 31 H 0.10 1.27 8.08 -2.39 -0.02 1.25 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.11 1.18 7.87 -2.39 -0.02 1.16 16 35 H 0.10 4.20 7.88 -2.39 -0.02 4.18 16 36 H 0.10 4.01 8.08 -2.39 -0.02 3.99 16 37 H 0.28 13.69 8.32 -92.71 -0.77 12.92 16 38 H 0.11 5.43 5.69 -2.91 -0.02 5.41 16 39 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 40 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 41 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 42 H 0.16 7.93 4.56 -60.07 -0.27 7.66 16 Total: -1.00 -70.75 370.38 7.61 -63.13 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.78 Total: 33.91 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 6.81 Total: 1.76 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: -1.00 Total: -66.05 kcal Atomic # 8 Polarization: -71.98 SS G_CDS: -1.01 Total: -72.99 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -70.75 7.61 -63.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837847061.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.345 kcal (2) G-P(sol) polarization free energy of solvation -70.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.24 seconds