Wall clock time and date at job start Tue Mar 31 2020 16:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30263 * 125.61798 * 2 1 4 4 C 1.34475 * 108.69402 * 180.18727 * 3 2 1 5 5 C 1.50705 * 126.15912 * 179.82518 * 4 3 2 6 6 O 1.45204 * 109.47029 * 269.68775 * 5 4 3 7 7 C 1.34229 * 116.99680 * 180.02562 * 6 5 4 8 8 O 1.20820 * 120.00264 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.99692 * 180.02562 * 7 6 5 10 10 C 1.50701 * 109.47242 * 179.97438 * 9 7 6 11 11 C 1.38299 * 119.93217 * 269.72899 * 10 9 7 12 12 C 1.38093 * 120.06953 * 179.72477 * 11 10 9 13 13 C 1.38883 * 119.92808 * 0.56550 * 12 11 10 14 14 O 1.35754 * 120.06438 * 179.68623 * 13 12 11 15 15 C 1.34826 * 116.99724 * 174.49160 * 14 13 12 16 16 H 1.07998 * 120.00100 * 5.04739 * 15 14 13 17 17 C 1.38654 * 119.99970 * 185.05457 * 15 14 13 18 18 N 1.31557 * 120.00012 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99959 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47303 * 60.00249 * 19 17 15 21 21 H 1.48499 * 109.46956 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47359 * 299.99968 * 19 17 15 23 23 C 1.38871 * 119.86468 * 359.70509 * 13 12 11 24 24 C 1.38101 * 119.93230 * 0.02562 * 23 13 12 25 25 C 1.34327 * 107.67323 * 359.55965 * 4 3 2 26 26 C 1.50704 * 126.44357 * 180.24065 * 25 4 3 27 27 O 1.33968 * 125.62082 * 179.70059 * 2 1 3 28 28 H 1.09001 * 109.46908 * 180.31493 * 1 2 3 29 29 H 1.09001 * 109.47334 * 300.31886 * 1 2 3 30 30 H 1.09005 * 109.47250 * 60.31636 * 1 2 3 31 31 H 1.09009 * 109.46929 * 149.69263 * 5 4 3 32 32 H 1.08992 * 109.47452 * 29.69234 * 5 4 3 33 33 H 1.09002 * 109.47056 * 59.99464 * 9 7 6 34 34 H 1.09001 * 109.46884 * 299.99951 * 9 7 6 35 35 H 1.08005 * 119.96050 * 359.97425 * 11 10 9 36 36 H 1.07999 * 120.03730 * 180.26989 * 12 11 10 37 37 H 0.97002 * 120.00021 * 179.97438 * 18 17 15 38 38 H 1.08002 * 120.03853 * 179.97438 * 23 13 12 39 39 H 1.07997 * 119.96732 * 179.97438 * 24 23 13 40 40 H 1.08999 * 109.46785 * 90.00288 * 26 25 4 41 41 H 1.08998 * 109.47114 * 210.00418 * 26 25 4 42 42 H 1.09003 * 109.47143 * 330.00697 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5521 0.6675 -0.0042 5 6 4.7570 1.5727 -0.0094 6 8 5.1436 1.8560 -1.3800 7 6 6.2077 2.6540 -1.5604 8 8 6.7970 3.1005 -0.6048 9 6 6.6675 2.9929 -2.9550 10 6 7.8709 3.8972 -2.8813 11 6 7.7023 5.2697 -2.8577 12 6 8.8026 6.1008 -2.7846 13 6 10.0801 5.5573 -2.7465 14 8 11.1641 6.3720 -2.6810 15 6 12.3663 5.7803 -2.5318 16 1 12.4443 4.7033 -2.5518 17 6 13.5026 6.5544 -2.3526 18 7 13.4077 7.8663 -2.3286 19 14 15.1682 5.7345 -2.1452 20 1 15.4738 4.9225 -3.3505 21 1 16.2137 6.7747 -1.9717 22 1 15.1414 4.8546 -0.9493 23 6 10.2464 4.1789 -2.7760 24 6 9.1418 3.3529 -2.8436 25 6 3.5697 -0.6757 0.0031 26 6 4.7937 -1.5549 0.0070 27 8 2.2872 -1.0890 0.0057 28 1 -0.3633 -1.0277 0.0056 29 1 -0.3634 0.5188 0.8871 30 1 -0.3634 0.5089 -0.8928 31 1 5.5823 1.0821 0.5069 32 1 4.5131 2.5051 0.4996 33 1 5.8642 3.5004 -3.4891 34 1 6.9328 2.0768 -3.4828 35 1 6.7087 5.6917 -2.8925 36 1 8.6702 7.1724 -2.7617 37 1 14.2026 8.4079 -2.2029 38 1 11.2386 3.7533 -2.7470 39 1 9.2704 2.2809 -2.8670 40 1 5.0894 -1.7614 1.0356 41 1 4.5692 -2.4924 -0.5017 42 1 5.6077 -1.0468 -0.5101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841341745.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:05 Heat of formation + Delta-G solvation = -68.693607 kcal Electronic energy + Delta-G solvation = -26380.939734 eV Core-core repulsion = 22293.837428 eV Total energy + Delta-G solvation = -4087.102306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.76401 -40.41695 -38.97091 -37.04213 -36.22497 -35.19178 -33.80786 -32.51306 -31.52481 -30.56772 -30.17192 -28.82783 -26.74695 -25.25221 -24.83865 -22.23389 -21.99197 -21.71000 -20.96958 -20.14949 -17.99504 -17.70382 -17.26875 -17.11962 -16.96875 -16.45359 -16.00254 -14.94656 -14.67191 -14.56482 -14.50859 -14.33353 -13.92269 -13.70671 -13.57844 -13.51050 -13.26895 -13.18320 -13.04333 -12.74932 -12.71943 -12.58884 -12.40115 -11.88238 -11.54515 -11.49687 -11.26876 -10.93045 -10.89370 -10.78208 -10.69923 -10.65130 -10.44180 -10.30588 -9.33838 -8.98244 -8.82332 -8.16920 -7.19965 -6.44755 -4.03424 0.95929 1.90298 2.22767 2.24051 2.26984 2.37224 3.03983 3.13512 3.16195 3.17714 3.60582 3.97112 4.26729 4.30229 4.56759 4.63932 4.79732 4.90203 4.92916 4.98507 5.02363 5.06701 5.09202 5.22288 5.25813 5.29915 5.31373 5.38909 5.58994 5.63985 5.65046 5.70949 5.83705 5.86572 6.20673 6.39861 6.42761 6.69589 6.90138 7.04401 7.22350 7.34001 7.34789 7.43861 7.81409 7.90509 8.00106 9.00564 9.70285 10.73034 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.027414 B = 0.001894 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.134753 B =14781.769372 C =15342.183190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.187 3.813 3 N -0.467 5.467 4 C -0.020 4.020 5 C 0.151 3.849 6 O -0.359 6.359 7 C 0.456 3.544 8 O -0.489 6.489 9 C -0.049 4.049 10 C -0.184 4.184 11 C -0.056 4.056 12 C -0.191 4.191 13 C 0.159 3.841 14 O -0.176 6.176 15 C -0.392 4.392 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.942 3.058 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.234 4.234 24 C -0.053 4.053 25 C -0.017 4.017 26 C -0.074 4.074 27 O -0.200 6.200 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.271 0.729 38 H 0.128 0.872 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.747 -19.090 2.688 29.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.020 4.020 3 N -0.197 5.197 4 C -0.139 4.139 5 C 0.077 3.923 6 O -0.277 6.277 7 C 0.298 3.702 8 O -0.374 6.374 9 C -0.086 4.086 10 C -0.185 4.185 11 C -0.074 4.074 12 C -0.211 4.211 13 C 0.105 3.895 14 O -0.079 6.079 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.496 5.496 19 Si 0.766 3.234 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.253 4.253 24 C -0.071 4.071 25 C -0.071 4.071 26 C -0.130 4.130 27 O -0.088 6.088 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.136 0.864 37 H 0.081 0.919 38 H 0.145 0.855 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.616 -17.914 3.036 28.238 hybrid contribution 1.059 -1.078 0.340 1.549 sum -20.557 -18.992 3.376 28.190 Atomic orbital electron populations 1.20262 0.80988 1.04734 1.05244 1.26258 0.96449 0.78347 1.00944 1.70295 1.01373 1.30358 1.17631 1.20917 0.92578 0.91568 1.08846 1.20831 0.91426 0.98300 0.81770 1.86564 1.46968 1.63536 1.30671 1.24263 0.77037 0.75184 0.93721 1.90715 1.54229 1.49336 1.43124 1.20102 0.97762 1.01081 0.89671 1.18632 0.92374 0.93096 1.14360 1.20436 0.97205 0.92327 0.97480 1.20164 0.89960 0.99636 1.11313 1.19402 0.88442 0.89715 0.91940 1.83978 1.12782 1.33312 1.77792 1.21291 0.81281 0.92686 1.51584 0.89063 1.25299 0.99267 0.95483 0.96461 1.70031 1.30345 1.03879 1.45369 0.85775 0.79884 0.78538 0.79200 1.19494 1.20267 1.19482 1.21103 0.99203 0.93341 1.11631 1.20527 0.91708 0.98104 0.96793 1.23286 0.84077 0.94884 1.04831 1.20397 0.89918 0.98537 1.04178 1.84408 1.16417 1.37840 1.70115 0.89339 0.88410 0.88348 0.89379 0.89358 0.87735 0.87804 0.87151 0.86389 0.91941 0.85458 0.87627 0.89329 0.89796 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.25 10.51 36.00 0.38 0.13 16 2 C 0.19 1.80 8.34 -12.94 -0.11 1.69 16 3 N -0.47 -5.80 11.30 -7.36 -0.08 -5.89 16 4 C -0.02 -0.24 6.75 -82.81 -0.56 -0.79 16 5 C 0.15 1.83 5.62 36.01 0.20 2.03 16 6 O -0.36 -4.77 10.20 -39.26 -0.40 -5.17 16 7 C 0.46 6.69 7.95 36.01 0.29 6.98 16 8 O -0.49 -8.93 15.78 -18.74 -0.30 -9.23 16 9 C -0.05 -0.63 5.94 -29.03 -0.17 -0.81 16 10 C -0.18 -3.17 4.38 -104.57 -0.46 -3.63 16 11 C -0.06 -1.03 9.69 -39.61 -0.38 -1.42 16 12 C -0.19 -4.16 9.99 -39.40 -0.39 -4.55 16 13 C 0.16 3.92 6.65 -39.11 -0.26 3.66 16 14 O -0.18 -5.08 9.76 0.05 0.00 -5.08 16 15 C -0.39 -11.06 9.49 30.89 0.29 -10.77 16 16 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 17 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -25.42 13.67 55.48 0.76 -24.67 16 19 Si 0.94 20.63 29.55 -169.99 -5.02 15.60 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 C -0.23 -5.16 9.17 -39.40 -0.36 -5.52 16 24 C -0.05 -0.98 9.69 -39.61 -0.38 -1.37 16 25 C -0.02 -0.17 7.39 -35.69 -0.26 -0.43 16 26 C -0.07 -0.46 10.04 36.01 0.36 -0.10 16 27 O -0.20 -2.00 10.77 5.38 0.06 -1.94 16 28 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.92 7.78 -51.92 -0.40 0.52 16 32 H 0.09 1.13 8.13 -51.93 -0.42 0.71 16 33 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 34 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 35 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 36 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 37 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 39 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 0.59 7.80 -51.93 -0.40 0.18 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -35.80 373.36 -6.43 -42.24 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.16 Total: 2.40 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -1.92 Total: -13.89 kcal Atomic # 7 Polarization: -31.23 SS G_CDS: 0.68 Total: -30.55 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.64 Total: -21.41 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.80 -6.43 -42.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841341745.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.458 kcal (2) G-P(sol) polarization free energy of solvation -35.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds