Wall clock time and date at job start Tue Mar 31 2020 16:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30263 * 125.61798 * 2 1 4 4 C 1.34475 * 108.69402 * 180.18727 * 3 2 1 5 5 C 1.50705 * 126.15912 * 179.82518 * 4 3 2 6 6 O 1.45204 * 109.47029 * 269.68775 * 5 4 3 7 7 C 1.34229 * 116.99680 * 180.02562 * 6 5 4 8 8 O 1.20820 * 120.00264 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.99692 * 180.02562 * 7 6 5 10 10 C 1.50701 * 109.47242 * 179.97438 * 9 7 6 11 11 C 1.38299 * 119.93217 * 269.72899 * 10 9 7 12 12 C 1.38093 * 120.06953 * 179.72477 * 11 10 9 13 13 C 1.38883 * 119.92808 * 0.56550 * 12 11 10 14 14 O 1.35754 * 120.06438 * 179.68623 * 13 12 11 15 15 C 1.34826 * 116.99724 * 174.49160 * 14 13 12 16 16 H 1.07998 * 120.00100 * 5.04739 * 15 14 13 17 17 C 1.38654 * 119.99970 * 185.05457 * 15 14 13 18 18 N 1.31557 * 120.00012 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99959 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47303 * 60.00249 * 19 17 15 21 21 H 1.48499 * 109.46956 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47359 * 299.99968 * 19 17 15 23 23 C 1.38871 * 119.86468 * 359.70509 * 13 12 11 24 24 C 1.38101 * 119.93230 * 0.02562 * 23 13 12 25 25 C 1.34327 * 107.67323 * 359.55965 * 4 3 2 26 26 C 1.50704 * 126.44357 * 180.24065 * 25 4 3 27 27 O 1.33968 * 125.62082 * 179.70059 * 2 1 3 28 28 H 1.09001 * 109.46908 * 180.31493 * 1 2 3 29 29 H 1.09001 * 109.47334 * 300.31886 * 1 2 3 30 30 H 1.09005 * 109.47250 * 60.31636 * 1 2 3 31 31 H 1.09009 * 109.46929 * 149.69263 * 5 4 3 32 32 H 1.08992 * 109.47452 * 29.69234 * 5 4 3 33 33 H 1.09002 * 109.47056 * 59.99464 * 9 7 6 34 34 H 1.09001 * 109.46884 * 299.99951 * 9 7 6 35 35 H 1.08005 * 119.96050 * 359.97425 * 11 10 9 36 36 H 1.07999 * 120.03730 * 180.26989 * 12 11 10 37 37 H 0.97002 * 120.00021 * 179.97438 * 18 17 15 38 38 H 1.08002 * 120.03853 * 179.97438 * 23 13 12 39 39 H 1.07997 * 119.96732 * 179.97438 * 24 23 13 40 40 H 1.08999 * 109.46785 * 90.00288 * 26 25 4 41 41 H 1.08998 * 109.47114 * 210.00418 * 26 25 4 42 42 H 1.09003 * 109.47143 * 330.00697 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5521 0.6675 -0.0042 5 6 4.7570 1.5727 -0.0094 6 8 5.1436 1.8560 -1.3800 7 6 6.2077 2.6540 -1.5604 8 8 6.7970 3.1005 -0.6048 9 6 6.6675 2.9929 -2.9550 10 6 7.8709 3.8972 -2.8813 11 6 7.7023 5.2697 -2.8577 12 6 8.8026 6.1008 -2.7846 13 6 10.0801 5.5573 -2.7465 14 8 11.1641 6.3720 -2.6810 15 6 12.3663 5.7803 -2.5318 16 1 12.4443 4.7033 -2.5518 17 6 13.5026 6.5544 -2.3526 18 7 13.4077 7.8663 -2.3286 19 14 15.1682 5.7345 -2.1452 20 1 15.4738 4.9225 -3.3505 21 1 16.2137 6.7747 -1.9717 22 1 15.1414 4.8546 -0.9493 23 6 10.2464 4.1789 -2.7760 24 6 9.1418 3.3529 -2.8436 25 6 3.5697 -0.6757 0.0031 26 6 4.7937 -1.5549 0.0070 27 8 2.2872 -1.0890 0.0057 28 1 -0.3633 -1.0277 0.0056 29 1 -0.3634 0.5188 0.8871 30 1 -0.3634 0.5089 -0.8928 31 1 5.5823 1.0821 0.5069 32 1 4.5131 2.5051 0.4996 33 1 5.8642 3.5004 -3.4891 34 1 6.9328 2.0768 -3.4828 35 1 6.7087 5.6917 -2.8925 36 1 8.6702 7.1724 -2.7617 37 1 14.2026 8.4079 -2.2029 38 1 11.2386 3.7533 -2.7470 39 1 9.2704 2.2809 -2.8670 40 1 5.0894 -1.7614 1.0356 41 1 4.5692 -2.4924 -0.5017 42 1 5.6077 -1.0468 -0.5101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841341745.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:04 Heat of formation + Delta-G solvation = -93.063457 kcal Electronic energy + Delta-G solvation = -26381.996490 eV Core-core repulsion = 22293.837428 eV Total energy + Delta-G solvation = -4088.159062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.49691 -41.61114 -40.67916 -38.55270 -37.57028 -36.01511 -34.47779 -34.39389 -33.02819 -31.80226 -31.01210 -29.79838 -28.21293 -27.05277 -25.59598 -23.65947 -23.22842 -22.80014 -21.77379 -21.53802 -19.85929 -18.86596 -18.78200 -18.09586 -17.89871 -17.56239 -16.99869 -16.41973 -16.32705 -15.93408 -15.54947 -15.50379 -15.25637 -15.07896 -14.55776 -14.39902 -14.31826 -14.28183 -14.04627 -13.66439 -13.59879 -13.56621 -13.33328 -13.18513 -12.96907 -12.88210 -12.50878 -12.35214 -12.30969 -12.28334 -12.14443 -11.87276 -11.61130 -11.52513 -11.18973 -10.78785 -9.78419 -9.69616 -8.95530 -8.47310 -6.15778 0.22175 0.58228 0.60259 1.18177 1.23137 1.34673 1.45813 1.51365 1.59402 2.04228 2.17966 2.81852 2.95074 3.17216 3.49829 3.51723 3.61135 3.75765 3.97215 4.02479 4.10693 4.17541 4.21604 4.30732 4.42605 4.52498 4.57175 4.57701 4.64107 4.67163 4.70275 4.78277 4.84703 4.96260 5.04602 5.09372 5.13705 5.24985 5.27532 5.37417 5.54168 5.70195 5.72870 6.02150 6.20190 6.61202 6.77051 6.96928 7.77343 8.75663 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.027414 B = 0.001894 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.134753 B =14781.769372 C =15342.183190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.189 3.811 3 N -0.508 5.508 4 C -0.052 4.052 5 C 0.153 3.847 6 O -0.354 6.354 7 C 0.464 3.536 8 O -0.532 6.532 9 C -0.047 4.047 10 C -0.159 4.159 11 C -0.055 4.055 12 C -0.207 4.207 13 C 0.116 3.884 14 O -0.232 6.232 15 C -0.415 4.415 16 H 0.103 0.897 17 C -0.024 4.024 18 N -0.921 5.921 19 Si 1.020 2.980 20 H -0.255 1.255 21 H -0.272 1.272 22 H -0.259 1.259 23 C -0.244 4.244 24 C -0.053 4.053 25 C -0.010 4.010 26 C -0.074 4.074 27 O -0.204 6.204 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.113 0.887 37 H 0.273 0.727 38 H 0.121 0.879 39 H 0.145 0.855 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.867 -22.905 2.242 33.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.018 4.018 3 N -0.238 5.238 4 C -0.170 4.170 5 C 0.079 3.921 6 O -0.271 6.271 7 C 0.309 3.691 8 O -0.421 6.421 9 C -0.084 4.084 10 C -0.159 4.159 11 C -0.072 4.072 12 C -0.226 4.226 13 C 0.066 3.934 14 O -0.138 6.138 15 C -0.491 4.491 16 H 0.120 0.880 17 C -0.221 4.221 18 N -0.559 5.559 19 Si 0.839 3.161 20 H -0.179 1.179 21 H -0.196 1.196 22 H -0.183 1.183 23 C -0.263 4.263 24 C -0.071 4.071 25 C -0.064 4.064 26 C -0.131 4.131 27 O -0.092 6.092 28 H 0.130 0.870 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.131 0.869 37 H 0.082 0.918 38 H 0.139 0.861 39 H 0.163 0.837 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -23.805 -21.773 2.571 32.363 hybrid contribution 1.265 -0.085 0.474 1.353 sum -22.540 -21.858 3.044 31.545 Atomic orbital electron populations 1.20552 0.77812 1.06605 1.06224 1.27217 0.97948 0.77667 0.98984 1.70264 1.02076 1.31923 1.19556 1.20963 0.92423 0.92432 1.11204 1.20871 0.92273 0.97963 0.80988 1.86550 1.46174 1.62844 1.31544 1.24407 0.76642 0.74396 0.93675 1.90727 1.55659 1.51105 1.44589 1.20238 0.96603 1.02169 0.89362 1.19165 0.93792 0.93369 1.09621 1.20897 0.97660 0.92852 0.95832 1.20430 0.90175 1.00217 1.11827 1.19968 0.88546 0.90984 0.93918 1.83942 1.13833 1.35075 1.80990 1.21806 0.81846 0.93478 1.51990 0.88016 1.26630 1.03560 0.96124 0.95831 1.70185 1.31629 1.05802 1.48246 0.84636 0.73989 0.77643 0.79863 1.17882 1.19605 1.18321 1.21247 1.00400 0.92728 1.11961 1.20974 0.91059 0.99764 0.95268 1.23853 0.84919 0.94749 1.02925 1.20590 0.88340 0.98609 1.05519 1.84442 1.16584 1.38046 1.70168 0.87035 0.87257 0.87309 0.88009 0.90876 0.84473 0.83915 0.83552 0.86918 0.91830 0.86106 0.83705 0.87687 0.88132 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 71.24 0.75 0.38 16 2 C 0.19 3.31 8.34 88.34 0.74 4.05 16 3 N -0.51 -12.13 11.30 -291.97 -3.30 -15.43 16 4 C -0.05 -1.17 6.75 41.26 0.28 -0.89 16 5 C 0.15 3.50 5.62 71.24 0.40 3.90 16 6 O -0.35 -8.42 10.20 -51.41 -0.52 -8.95 16 7 C 0.46 12.10 7.95 71.24 0.57 12.67 16 8 O -0.53 -18.40 15.78 21.98 0.35 -18.05 16 9 C -0.05 -0.98 5.94 29.10 0.17 -0.81 16 10 C -0.16 -4.95 4.38 -19.83 -0.09 -5.03 16 11 C -0.05 -1.90 9.69 22.25 0.22 -1.68 16 12 C -0.21 -9.21 9.99 22.39 0.22 -8.99 16 13 C 0.12 5.99 6.65 22.58 0.15 6.14 16 14 O -0.23 -14.34 9.76 -22.74 -0.22 -14.57 16 15 C -0.42 -24.67 9.49 67.92 0.64 -24.03 16 16 H 0.10 5.52 5.20 -2.91 -0.02 5.50 16 17 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 18 N -0.92 -57.47 13.67 21.61 0.30 -57.18 16 19 Si 1.02 43.43 29.55 68.60 2.03 45.46 16 20 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 23 C -0.24 -10.87 9.17 22.39 0.21 -10.66 16 24 C -0.05 -1.82 9.69 22.25 0.22 -1.61 16 25 C -0.01 -0.18 7.39 24.79 0.18 0.00 16 26 C -0.07 -0.71 10.04 71.24 0.72 0.00 16 27 O -0.20 -3.66 10.77 -3.66 -0.04 -3.70 16 28 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.10 1.99 7.78 -2.38 -0.02 1.97 16 32 H 0.07 1.87 8.13 -2.39 -0.02 1.85 16 33 H 0.14 2.15 8.08 -2.39 -0.02 2.13 16 34 H 0.14 2.05 8.08 -2.39 -0.02 2.03 16 35 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 36 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 37 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.12 5.42 5.64 -2.91 -0.02 5.40 16 39 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 40 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.10 0.92 7.80 -2.39 -0.02 0.90 16 Total: -1.00 -84.97 373.36 5.48 -79.49 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 1.06 Total: 20.41 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 5.84 Total: -27.49 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -3.00 Total: -72.60 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -0.44 Total: -45.27 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -84.97 5.48 -79.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841341745.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.575 kcal (2) G-P(sol) polarization free energy of solvation -84.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds