Wall clock time and date at job start Tue Mar 31 2020 16:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 O 1.45204 * 109.47283 * 295.00220 * 3 2 1 14 14 C 1.34229 * 116.99670 * 89.99710 * 13 3 2 15 15 O 1.20819 * 120.00442 * 0.02562 * 14 13 3 16 16 C 1.50708 * 119.99467 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.47054 * 299.99621 * 16 14 13 18 18 C 1.53000 * 109.46957 * 59.99801 * 16 14 13 19 19 N 1.46499 * 109.46674 * 179.97438 * 16 14 13 20 20 C 1.34515 * 124.46183 * 299.69336 * 19 16 14 21 21 O 1.21446 * 125.71145 * 0.04097 * 20 19 16 22 22 C 1.47817 * 108.58205 * 179.90846 * 20 19 16 23 23 C 1.38564 * 134.29935 * 180.09827 * 22 20 19 24 24 C 1.38612 * 119.71934 * 180.27396 * 23 22 20 25 25 C 1.38228 * 120.45964 * 0.02562 * 24 23 22 26 26 C 1.38611 * 120.45750 * 0.02562 * 25 24 23 27 27 C 1.38566 * 119.72030 * 359.97438 * 26 25 24 28 28 C 1.34528 * 124.45537 * 120.00325 * 19 16 14 29 29 O 1.21440 * 125.71591 * 359.95393 * 28 19 16 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 35 35 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 36 36 H 1.08992 * 109.46856 * 60.00122 * 18 16 14 37 37 H 1.09003 * 109.46768 * 180.02562 * 18 16 14 38 38 H 1.09000 * 109.47159 * 299.99644 * 18 16 14 39 39 H 1.08001 * 120.14419 * 0.26037 * 23 22 20 40 40 H 1.07997 * 119.77204 * 180.02562 * 24 23 22 41 41 H 1.08003 * 119.77407 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.13772 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 8 1.6559 2.0917 -1.2407 14 6 0.4728 2.7254 -1.2558 15 8 -0.2188 2.7377 -0.2652 16 6 0.0070 3.4217 -2.5087 17 1 0.7240 4.1959 -2.7820 18 6 -0.1038 2.4045 -3.6462 19 7 -1.3035 4.0314 -2.2699 20 6 -2.4085 3.3485 -1.9207 21 8 -2.4767 2.1473 -1.7553 22 6 -3.5252 4.3050 -1.7690 23 6 -4.8635 4.1845 -1.4306 24 6 -5.6646 5.3147 -1.3826 25 6 -5.1377 6.5598 -1.6702 26 6 -3.8010 6.6954 -2.0112 27 6 -2.9882 5.5744 -2.0633 28 6 -1.5616 5.3474 -2.3769 29 8 -0.7575 6.2051 -2.6811 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8293 -0.0605 2.9503 36 1 -0.8207 1.6305 -3.3728 37 1 -0.4402 2.9083 -4.5525 38 1 0.8711 1.9506 -3.8239 39 1 -5.2807 3.2141 -1.2055 40 1 -6.7076 5.2218 -1.1185 41 1 -5.7718 7.4331 -1.6290 42 1 -3.3947 7.6708 -2.2346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842342365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:30 Heat of formation + Delta-G solvation = -101.275687 kcal Electronic energy + Delta-G solvation = -28883.855206 eV Core-core repulsion = 24795.340035 eV Total energy + Delta-G solvation = -4088.515171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.53001 -39.79354 -38.68776 -38.55921 -36.20102 -35.58244 -33.80924 -33.28975 -31.45111 -31.32538 -30.25538 -27.27938 -25.42740 -25.20876 -23.89478 -22.91597 -22.40578 -21.08958 -19.92454 -19.34189 -18.10318 -17.53199 -17.08095 -16.75895 -16.36158 -16.15954 -15.59357 -15.31148 -15.13059 -14.89404 -14.61501 -14.33028 -14.30398 -13.99304 -13.27582 -13.09658 -12.90348 -12.81311 -12.64919 -12.52994 -12.10405 -11.87740 -11.73470 -11.43979 -11.29079 -11.18536 -10.94544 -10.64795 -10.61904 -10.33792 -10.28366 -10.20422 -9.73554 -9.60101 -9.53670 -9.44637 -9.33468 -8.81262 -8.46002 -6.18782 -4.26327 -0.13595 0.65690 1.84943 2.05636 2.82859 2.86380 3.24652 3.29753 3.31019 3.33323 3.40708 3.62345 4.14405 4.30728 4.31900 4.52184 4.72510 4.84312 4.89390 4.93225 5.06525 5.09073 5.13253 5.43375 5.45892 5.62149 5.68831 5.75139 5.83941 5.85755 6.08464 6.25010 6.30009 6.38288 6.51908 6.58971 6.88565 7.01859 7.13569 7.20487 7.24566 7.58343 7.61840 7.73546 7.91817 8.14382 8.55147 8.84809 9.38676 10.87861 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.020954 B = 0.003181 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.947295 B = 8800.015435 C = 9163.595664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.223 3.777 4 H 0.046 0.954 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.348 6.348 14 C 0.447 3.553 15 O -0.500 6.500 16 C 0.145 3.855 17 H 0.140 0.860 18 C -0.160 4.160 19 N -0.562 5.562 20 C 0.577 3.423 21 O -0.438 6.438 22 C -0.128 4.128 23 C -0.048 4.048 24 C -0.096 4.096 25 C -0.101 4.101 26 C -0.046 4.046 27 C -0.138 4.138 28 C 0.579 3.421 29 O -0.465 6.465 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.031 0.969 33 H 0.108 0.892 34 H 0.042 0.958 35 H 0.266 0.734 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.891 10.139 -10.490 23.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.171 3.829 4 H 0.064 0.936 5 C -0.560 4.560 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.739 3.261 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.195 1.195 13 O -0.263 6.263 14 C 0.288 3.712 15 O -0.388 6.388 16 C 0.043 3.957 17 H 0.157 0.843 18 C -0.217 4.217 19 N -0.305 5.305 20 C 0.365 3.635 21 O -0.307 6.307 22 C -0.132 4.132 23 C -0.066 4.066 24 C -0.114 4.114 25 C -0.119 4.119 26 C -0.064 4.064 27 C -0.141 4.141 28 C 0.368 3.632 29 O -0.337 6.337 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.126 0.874 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.539 9.747 -10.062 22.446 hybrid contribution 0.959 -0.070 0.440 1.058 sum -16.579 9.677 -9.621 21.473 Atomic orbital electron populations 1.21842 0.97938 0.99023 1.01067 1.22015 0.92865 0.99076 1.03322 1.20742 0.95028 0.88846 0.78261 0.93579 1.21034 0.89525 1.39115 1.06354 0.91247 1.24890 0.99287 0.94712 0.95048 1.69898 1.35413 1.37738 1.09414 0.86269 0.83797 0.77689 0.78374 1.20412 1.20936 1.19548 1.86453 1.33167 1.62187 1.44542 1.22966 0.81682 0.77752 0.88847 1.90642 1.55186 1.57751 1.35235 1.20796 0.82956 0.98179 0.93812 0.84276 1.22112 1.05558 0.98502 0.95567 1.46314 1.10874 1.09315 1.64025 1.18224 0.82658 0.87326 0.75283 1.90817 1.83632 1.13269 1.42993 1.20623 0.95127 0.94055 1.03363 1.20822 0.90608 1.00132 0.95072 1.21457 1.00429 0.91892 0.97647 1.21435 0.94615 0.98250 0.97601 1.20791 0.92616 0.97641 0.95381 1.20540 0.93913 0.95219 1.04440 1.18333 0.88018 0.81433 0.75424 1.90805 1.53400 1.46722 1.42727 0.94335 0.93148 0.94945 0.87380 0.93943 0.92366 0.90430 0.90966 0.88490 0.83970 0.84122 0.84137 0.84035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.57 37.16 0.32 -2.96 16 2 C -0.13 -3.42 5.49 -26.74 -0.15 -3.57 16 3 C 0.22 6.01 2.25 -27.89 -0.06 5.95 16 4 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -14.68 8.90 -34.44 -0.31 -14.99 16 6 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.27 11.29 55.43 0.63 -24.65 16 9 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 O -0.35 -8.28 9.71 -39.26 -0.38 -8.66 16 14 C 0.45 9.59 5.44 36.01 0.20 9.79 16 15 O -0.50 -11.98 12.08 -23.86 -0.29 -12.27 16 16 C 0.15 2.38 3.30 -69.08 -0.23 2.16 16 17 H 0.14 2.07 7.58 -51.93 -0.39 1.68 16 18 C -0.16 -2.17 9.13 37.16 0.34 -1.84 16 19 N -0.56 -8.89 2.31 -111.74 -0.26 -9.15 16 20 C 0.58 9.18 6.68 -12.46 -0.08 9.10 16 21 O -0.44 -8.09 15.57 -8.25 -0.13 -8.22 16 22 C -0.13 -1.59 6.40 -104.84 -0.67 -2.26 16 23 C -0.05 -0.43 10.09 -39.32 -0.40 -0.83 16 24 C -0.10 -0.60 10.04 -39.45 -0.40 -0.99 16 25 C -0.10 -0.60 10.04 -39.45 -0.40 -1.00 16 26 C -0.05 -0.38 10.09 -39.32 -0.40 -0.78 16 27 C -0.14 -1.63 6.40 -104.83 -0.67 -2.30 16 28 C 0.58 8.48 8.02 -12.45 -0.10 8.38 16 29 O -0.47 -7.53 17.43 5.42 0.09 -7.44 16 30 H 0.04 0.88 6.06 -51.93 -0.31 0.57 16 31 H 0.05 1.24 7.80 -51.93 -0.40 0.83 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.11 2.97 5.95 -51.93 -0.31 2.66 16 34 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.08 1.17 6.81 -51.93 -0.35 0.81 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 1.27 8.11 -51.93 -0.42 0.85 16 39 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 41 H 0.14 0.39 8.06 -52.48 -0.42 -0.03 16 42 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 LS Contribution 357.64 15.07 5.39 5.39 Total: -1.00 -33.92 357.64 -8.14 -42.06 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.07 Total: 1.27 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -3.10 Total: 5.52 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.37 Total: -33.80 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.70 Total: -36.59 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.92 -8.14 -42.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842342365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.219 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds