Wall clock time and date at job start Tue Mar 31 2020 16:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 O 1.45204 * 109.47283 * 295.00220 * 3 2 1 14 14 C 1.34229 * 116.99670 * 89.99710 * 13 3 2 15 15 O 1.20819 * 120.00442 * 0.02562 * 14 13 3 16 16 C 1.50708 * 119.99467 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.47054 * 299.99621 * 16 14 13 18 18 C 1.53000 * 109.46957 * 59.99801 * 16 14 13 19 19 N 1.46499 * 109.46674 * 179.97438 * 16 14 13 20 20 C 1.34515 * 124.46183 * 299.69336 * 19 16 14 21 21 O 1.21446 * 125.71145 * 0.04097 * 20 19 16 22 22 C 1.47817 * 108.58205 * 179.90846 * 20 19 16 23 23 C 1.38564 * 134.29935 * 180.09827 * 22 20 19 24 24 C 1.38612 * 119.71934 * 180.27396 * 23 22 20 25 25 C 1.38228 * 120.45964 * 0.02562 * 24 23 22 26 26 C 1.38611 * 120.45750 * 0.02562 * 25 24 23 27 27 C 1.38566 * 119.72030 * 359.97438 * 26 25 24 28 28 C 1.34528 * 124.45537 * 120.00325 * 19 16 14 29 29 O 1.21440 * 125.71591 * 359.95393 * 28 19 16 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 35 35 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 36 36 H 1.08992 * 109.46856 * 60.00122 * 18 16 14 37 37 H 1.09003 * 109.46768 * 180.02562 * 18 16 14 38 38 H 1.09000 * 109.47159 * 299.99644 * 18 16 14 39 39 H 1.08001 * 120.14419 * 0.26037 * 23 22 20 40 40 H 1.07997 * 119.77204 * 180.02562 * 24 23 22 41 41 H 1.08003 * 119.77407 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.13772 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 8 1.6559 2.0917 -1.2407 14 6 0.4728 2.7254 -1.2558 15 8 -0.2188 2.7377 -0.2652 16 6 0.0070 3.4217 -2.5087 17 1 0.7240 4.1959 -2.7820 18 6 -0.1038 2.4045 -3.6462 19 7 -1.3035 4.0314 -2.2699 20 6 -2.4085 3.3485 -1.9207 21 8 -2.4767 2.1473 -1.7553 22 6 -3.5252 4.3050 -1.7690 23 6 -4.8635 4.1845 -1.4306 24 6 -5.6646 5.3147 -1.3826 25 6 -5.1377 6.5598 -1.6702 26 6 -3.8010 6.6954 -2.0112 27 6 -2.9882 5.5744 -2.0633 28 6 -1.5616 5.3474 -2.3769 29 8 -0.7575 6.2051 -2.6811 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8293 -0.0605 2.9503 36 1 -0.8207 1.6305 -3.3728 37 1 -0.4402 2.9083 -4.5525 38 1 0.8711 1.9506 -3.8239 39 1 -5.2807 3.2141 -1.2055 40 1 -6.7076 5.2218 -1.1185 41 1 -5.7718 7.4331 -1.6290 42 1 -3.3947 7.6708 -2.2346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842342365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:29 Heat of formation + Delta-G solvation = -121.164196 kcal Electronic energy + Delta-G solvation = -28884.717637 eV Core-core repulsion = 24795.340035 eV Total energy + Delta-G solvation = -4089.377602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.63041 -41.49033 -39.84357 -39.49896 -37.87004 -37.04476 -35.64822 -34.63656 -33.36843 -32.12408 -31.21641 -29.35725 -26.61362 -26.23375 -25.49704 -24.48763 -23.32060 -22.53514 -21.55648 -20.78974 -19.28889 -19.01807 -18.47086 -18.30909 -17.83394 -17.35625 -17.18023 -16.89024 -16.45394 -16.17136 -15.71515 -15.42668 -15.23155 -15.04509 -14.92397 -14.81597 -14.62522 -13.90408 -13.62468 -13.58901 -13.42850 -13.37641 -13.24937 -13.19114 -13.12813 -12.83766 -12.61514 -12.53978 -12.16440 -11.85821 -11.73548 -11.60710 -11.49738 -11.40524 -11.02984 -10.88763 -10.57975 -10.22184 -10.20521 -8.30894 -6.48640 -1.02914 -0.01672 0.87115 0.97032 1.12938 1.39822 1.41878 1.53166 1.62776 2.00922 2.36952 2.55633 2.64439 2.98583 3.15386 3.54900 3.59006 3.64156 3.70233 4.00463 4.06840 4.18594 4.24552 4.30342 4.34420 4.45999 4.48664 4.54239 4.63677 4.76202 4.84545 4.90588 4.99479 5.03727 5.15820 5.21677 5.26781 5.27724 5.45500 5.46457 5.60273 5.70937 5.88085 6.02461 6.03338 6.41567 6.54920 6.81752 7.22132 8.76069 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.020954 B = 0.003181 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.947295 B = 8800.015435 C = 9163.595664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.126 4.126 3 C 0.228 3.772 4 H 0.003 0.997 5 C -0.551 4.551 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.984 3.016 10 H -0.273 1.273 11 H -0.274 1.274 12 H -0.261 1.261 13 O -0.352 6.352 14 C 0.441 3.559 15 O -0.529 6.529 16 C 0.148 3.852 17 H 0.154 0.846 18 C -0.150 4.150 19 N -0.571 5.571 20 C 0.569 3.431 21 O -0.480 6.480 22 C -0.157 4.157 23 C -0.049 4.049 24 C -0.079 4.079 25 C -0.081 4.081 26 C -0.040 4.040 27 C -0.159 4.159 28 C 0.575 3.425 29 O -0.490 6.490 30 H 0.036 0.964 31 H 0.027 0.973 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.271 0.729 36 H 0.061 0.939 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.150 0.850 40 H 0.183 0.817 41 H 0.186 0.814 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.724 11.818 -11.421 25.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.164 4.164 3 C 0.175 3.825 4 H 0.020 0.980 5 C -0.588 4.588 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.806 3.194 10 H -0.199 1.199 11 H -0.199 1.199 12 H -0.185 1.185 13 O -0.268 6.268 14 C 0.283 3.717 15 O -0.419 6.419 16 C 0.045 3.955 17 H 0.172 0.828 18 C -0.208 4.208 19 N -0.313 5.313 20 C 0.360 3.640 21 O -0.352 6.352 22 C -0.161 4.161 23 C -0.068 4.068 24 C -0.097 4.097 25 C -0.099 4.099 26 C -0.059 4.059 27 C -0.162 4.162 28 C 0.367 3.633 29 O -0.363 6.363 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.167 0.833 40 H 0.201 0.799 41 H 0.204 0.796 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -19.400 11.448 -11.012 25.073 hybrid contribution 1.345 -0.481 0.766 1.621 sum -18.055 10.967 -10.246 23.478 Atomic orbital electron populations 1.21658 0.96412 1.00262 0.99872 1.21855 0.94071 0.98008 1.02506 1.20427 0.94726 0.89206 0.78139 0.97957 1.21321 0.90147 1.40216 1.07140 0.91303 1.25844 1.04452 0.93739 0.94265 1.70024 1.37571 1.37815 1.09827 0.85170 0.77374 0.78005 0.78803 1.19850 1.19935 1.18522 1.86436 1.34698 1.62721 1.42904 1.24022 0.80402 0.76972 0.90307 1.90618 1.55623 1.58751 1.36898 1.20911 0.84091 0.98809 0.91664 0.82837 1.22102 1.05529 0.97588 0.95541 1.46491 1.10472 1.10103 1.64272 1.18914 0.83654 0.87401 0.74011 1.90772 1.84382 1.14930 1.45119 1.20509 0.95737 0.92945 1.06874 1.21168 0.89448 1.01962 0.94232 1.21975 1.01842 0.90701 0.95141 1.21995 0.93634 0.99731 0.94494 1.21212 0.93385 0.97192 0.94110 1.20451 0.92202 0.96396 1.07166 1.18866 0.89391 0.80589 0.74463 1.90774 1.54465 1.46988 1.44122 0.94472 0.95335 0.92329 0.89437 0.93219 0.91971 0.92030 0.87676 0.87958 0.83261 0.79939 0.79628 0.82218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.02 8.57 71.98 0.62 -5.40 16 2 C -0.13 -6.68 5.49 30.59 0.17 -6.51 16 3 C 0.23 12.91 2.25 29.85 0.07 12.98 16 4 H 0.00 0.17 7.16 -2.39 -0.02 0.15 16 5 C -0.55 -31.94 8.90 25.60 0.23 -31.71 16 6 H 0.07 3.89 7.81 -2.91 -0.02 3.87 16 7 C 0.02 0.95 5.29 84.65 0.45 1.39 16 8 N -0.91 -53.49 11.29 21.45 0.24 -53.25 16 9 Si 0.98 43.61 29.54 68.60 2.03 45.64 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 13 O -0.35 -17.56 9.71 -51.41 -0.50 -18.06 16 14 C 0.44 19.97 5.44 71.24 0.39 20.36 16 15 O -0.53 -27.09 12.08 26.88 0.32 -26.77 16 16 C 0.15 5.07 3.30 44.25 0.15 5.21 16 17 H 0.15 4.73 7.58 -2.39 -0.02 4.71 16 18 C -0.15 -4.15 9.13 71.98 0.66 -3.49 16 19 N -0.57 -18.82 2.31 -744.37 -1.72 -20.54 16 20 C 0.57 19.01 6.68 86.82 0.58 19.59 16 21 O -0.48 -18.83 15.57 9.52 0.15 -18.68 16 22 C -0.16 -3.88 6.40 -20.00 -0.13 -4.01 16 23 C -0.05 -0.80 10.09 22.44 0.23 -0.57 16 24 C -0.08 -0.61 10.04 22.36 0.22 -0.39 16 25 C -0.08 -0.55 10.04 22.36 0.22 -0.32 16 26 C -0.04 -0.55 10.09 22.44 0.23 -0.33 16 27 C -0.16 -3.65 6.40 -20.00 -0.13 -3.78 16 28 C 0.58 17.28 8.02 86.82 0.70 17.98 16 29 O -0.49 -16.19 17.43 -3.53 -0.06 -16.26 16 30 H 0.04 1.77 6.06 -2.39 -0.01 1.76 16 31 H 0.03 1.46 7.80 -2.39 -0.02 1.44 16 32 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 33 H 0.09 5.00 5.95 -2.39 -0.01 4.99 16 34 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 36 H 0.06 1.92 6.81 -2.39 -0.02 1.90 16 37 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.10 2.69 8.11 -2.39 -0.02 2.67 16 39 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.18 -0.03 8.06 -2.91 -0.02 -0.06 16 41 H 0.19 -0.30 8.06 -2.91 -0.02 -0.32 16 42 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -79.69 357.64 6.16 -73.54 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 1.06 Total: 13.38 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: 4.64 Total: 21.00 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -1.48 Total: -73.79 kcal Atomic # 8 Polarization: -79.68 SS G_CDS: -0.09 Total: -79.77 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -79.69 6.16 -73.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842342365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.628 kcal (2) G-P(sol) polarization free energy of solvation -79.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds