Wall clock time and date at job start Tue Mar 31 2020 16:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47345 * 2 1 4 4 N 1.30174 * 126.80726 * 270.03168 * 3 2 1 5 5 O 1.20916 * 111.60700 * 179.97438 * 4 3 2 6 6 C 1.34044 * 111.56773 * 359.75859 * 5 4 3 7 7 C 1.35443 * 106.44266 * 0.38118 * 6 5 4 8 8 C 1.50705 * 128.00453 * 179.91404 * 7 6 5 9 9 O 1.45204 * 109.47029 * 359.67546 * 8 7 6 10 10 C 1.34229 * 116.99680 * 180.02562 * 9 8 7 11 11 O 1.20820 * 120.00264 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99692 * 180.02562 * 10 9 8 13 13 C 1.50701 * 109.47242 * 179.97438 * 12 10 9 14 14 C 1.38299 * 119.93217 * 269.72899 * 13 12 10 15 15 C 1.38093 * 120.06953 * 179.72477 * 14 13 12 16 16 C 1.38883 * 119.92808 * 0.56550 * 15 14 13 17 17 O 1.35754 * 120.06438 * 179.68623 * 16 15 14 18 18 C 1.34826 * 116.99724 * 174.49160 * 17 16 15 19 19 H 1.07998 * 120.00100 * 5.04739 * 18 17 16 20 20 C 1.38654 * 119.99970 * 185.05457 * 18 17 16 21 21 N 1.31557 * 120.00012 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99959 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47303 * 60.00249 * 22 20 18 24 24 H 1.48499 * 109.46956 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47359 * 299.99968 * 22 20 18 26 26 C 1.38871 * 119.86468 * 359.70509 * 16 15 14 27 27 C 1.38101 * 119.93230 * 0.02562 * 26 16 15 28 28 H 1.09002 * 109.46883 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47064 * 299.99778 * 1 2 3 30 30 H 1.08998 * 109.47217 * 59.99555 * 1 2 3 31 31 H 1.08998 * 109.47469 * 240.00555 * 2 1 3 32 32 H 1.08997 * 109.47699 * 120.00252 * 2 1 3 33 33 H 1.07997 * 126.77797 * 180.28931 * 6 5 4 34 34 H 1.09009 * 109.46929 * 239.68034 * 8 7 6 35 35 H 1.08992 * 109.47452 * 119.68005 * 8 7 6 36 36 H 1.09002 * 109.47056 * 59.99464 * 12 10 9 37 37 H 1.09001 * 109.46884 * 299.99951 * 12 10 9 38 38 H 1.08005 * 119.96050 * 359.97425 * 14 13 12 39 39 H 1.07999 * 120.03730 * 180.26989 * 15 14 13 40 40 H 0.97002 * 120.00021 * 179.97438 * 21 20 18 41 41 H 1.08002 * 120.03853 * 179.97438 * 26 16 15 42 42 H 1.07997 * 119.96732 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2919 2.1563 -1.0422 5 8 2.6805 3.2565 -0.7252 6 6 2.7255 3.3983 0.6070 7 6 2.3146 2.2194 1.1321 8 6 2.1827 1.8471 2.5864 9 8 2.5809 2.9731 3.4123 10 6 2.5214 2.8041 4.7426 11 8 2.1495 1.7503 5.2017 12 6 2.9187 3.9290 5.6634 13 6 2.7616 3.4855 7.0951 14 6 1.5615 3.6868 7.7522 15 6 1.4126 3.2764 9.0623 16 6 2.4735 2.6716 9.7237 17 8 2.3323 2.2728 11.0137 18 6 3.3595 1.5913 11.5596 19 1 4.2748 1.4563 11.0025 20 6 3.2409 1.0636 12.8363 21 7 2.1261 1.2284 13.5152 22 14 4.6639 0.1188 13.5925 23 1 5.8545 1.0022 13.6787 24 1 4.2871 -0.3374 14.9545 25 1 4.9818 -1.0589 12.7457 26 6 3.6792 2.4759 9.0630 27 6 3.8200 2.8835 7.7510 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.0305 4.2784 1.1536 34 1 2.8246 0.9930 2.8026 35 1 1.1466 1.5866 2.8023 36 1 2.2797 4.7926 5.4787 37 1 3.9581 4.2000 5.4785 38 1 0.7385 4.1618 7.2388 39 1 0.4738 3.4299 9.5735 40 1 2.0429 0.8589 14.4082 41 1 4.5062 2.0063 9.5748 42 1 4.7576 2.7320 7.2368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848718196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:28 Heat of formation + Delta-G solvation = -33.541808 kcal Electronic energy + Delta-G solvation = -26412.758656 eV Core-core repulsion = 22327.180646 eV Total energy + Delta-G solvation = -4085.578010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.32211 -40.56344 -39.02988 -37.20253 -36.40381 -35.85068 -32.99528 -32.53157 -31.55188 -31.45655 -30.22048 -28.25219 -26.64766 -25.18836 -24.88079 -22.41219 -22.03781 -21.64882 -21.04571 -20.14425 -18.05698 -18.02223 -17.87679 -17.59936 -17.04639 -16.63671 -16.28910 -15.38921 -14.86917 -14.71335 -14.61766 -14.39327 -14.01285 -13.86223 -13.71511 -13.58962 -13.42685 -13.07217 -12.76835 -12.63532 -12.38299 -12.04428 -11.97574 -11.96832 -11.60673 -11.36792 -11.31179 -11.18130 -10.94432 -10.83092 -10.69286 -10.47343 -10.39301 -10.23809 -9.73424 -9.37938 -8.86062 -8.21946 -7.24916 -6.48229 -4.06954 1.12805 1.76216 2.00580 2.19198 2.26022 2.60289 2.92425 3.11362 3.13155 3.15502 3.69716 3.94221 4.12069 4.39628 4.54679 4.66576 4.79792 4.80695 4.84145 4.91506 4.97398 5.02826 5.08481 5.15599 5.25669 5.30505 5.38824 5.44648 5.56164 5.57635 5.59415 5.65841 5.77842 5.78344 6.15961 6.28259 6.35681 6.64326 6.85143 7.00035 7.17180 7.29145 7.39763 7.75673 7.78663 7.88554 7.96517 8.97066 9.66134 10.69430 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.022362 B = 0.001924 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.822445 B =14550.083513 C =14926.438389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.050 4.050 3 C 0.033 3.967 4 N -0.362 5.362 5 O 0.097 5.903 6 C -0.030 4.030 7 C -0.210 4.210 8 C 0.148 3.852 9 O -0.365 6.365 10 C 0.457 3.543 11 O -0.486 6.486 12 C -0.048 4.048 13 C -0.186 4.186 14 C -0.056 4.056 15 C -0.192 4.192 16 C 0.159 3.841 17 O -0.175 6.175 18 C -0.393 4.393 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.861 5.861 22 Si 0.942 3.058 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.233 4.233 27 C -0.052 4.052 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.223 0.777 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.271 0.729 41 H 0.128 0.872 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 3.421 -24.222 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.127 4.127 4 N -0.067 5.067 5 O 0.033 5.967 6 C -0.112 4.112 7 C -0.214 4.214 8 C 0.074 3.926 9 O -0.283 6.283 10 C 0.299 3.701 11 O -0.371 6.371 12 C -0.085 4.085 13 C -0.187 4.187 14 C -0.074 4.074 15 C -0.211 4.211 16 C 0.105 3.895 17 O -0.078 6.078 18 C -0.469 4.469 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.253 4.253 27 C -0.071 4.071 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.240 0.760 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.536 2.835 -25.011 25.177 hybrid contribution 0.722 -0.677 1.242 1.588 sum 1.259 2.158 -23.769 23.900 Atomic orbital electron populations 1.21732 0.93637 1.02665 1.02541 1.20010 0.96707 0.87916 1.04162 1.23380 1.02313 0.99373 0.87630 1.73871 1.16180 0.92764 1.23883 1.84826 1.62138 1.26550 1.23167 1.25859 1.01386 1.01028 0.82890 1.20941 1.09247 0.95290 0.95925 1.20794 1.01525 0.87600 0.82700 1.86427 1.79759 1.42512 1.19619 1.24289 0.74886 0.90353 0.80557 1.90727 1.41626 1.28285 1.76441 1.20105 1.04021 0.94354 0.90044 1.18614 0.96155 1.10732 0.93241 1.20420 0.95555 0.97805 0.93646 1.20163 0.98398 1.07516 0.95041 1.19408 0.92867 0.91983 0.85235 1.83977 1.41944 1.62542 1.19292 1.21295 0.93576 1.32542 0.99460 0.89038 1.25307 0.98306 0.97255 0.95640 1.70028 1.25158 1.42430 1.11926 0.85771 0.79691 0.79532 0.78391 1.19463 1.20246 1.19462 1.21108 0.98927 1.09339 0.95901 1.20533 0.96985 0.95544 0.94008 0.91307 0.92194 0.92331 0.89747 0.89379 0.76014 0.89563 0.89545 0.87656 0.87692 0.87180 0.86391 0.91900 0.85449 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.61 16 2 C -0.05 -0.36 6.44 -27.88 -0.18 -0.54 16 3 C 0.03 0.31 6.58 -82.10 -0.54 -0.23 16 4 N -0.36 -3.88 12.07 33.42 0.40 -3.47 16 5 O 0.10 0.92 11.20 17.17 0.19 1.11 16 6 C -0.03 -0.23 11.71 29.73 0.35 0.11 16 7 C -0.21 -1.89 6.28 -104.42 -0.66 -2.54 16 8 C 0.15 1.42 5.98 36.01 0.22 1.63 16 9 O -0.36 -3.79 9.72 -39.26 -0.38 -4.18 16 10 C 0.46 5.88 7.95 36.01 0.29 6.16 16 11 O -0.49 -8.20 15.78 -18.74 -0.30 -8.49 16 12 C -0.05 -0.55 5.94 -29.03 -0.17 -0.72 16 13 C -0.19 -3.02 4.38 -104.57 -0.46 -3.48 16 14 C -0.06 -0.97 9.69 -39.61 -0.38 -1.36 16 15 C -0.19 -4.02 9.99 -39.40 -0.39 -4.41 16 16 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 17 O -0.17 -4.96 9.76 0.05 0.00 -4.96 16 18 C -0.39 -10.90 9.49 30.89 0.29 -10.61 16 19 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.09 13.67 55.48 0.76 -24.33 16 22 Si 0.94 20.37 29.55 -169.99 -5.02 15.34 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 C -0.23 -5.02 9.17 -39.40 -0.36 -5.38 16 27 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.22 1.01 8.00 -52.49 -0.42 0.59 16 34 H 0.09 0.82 8.13 -51.92 -0.42 0.40 16 35 H 0.09 0.82 8.13 -51.93 -0.42 0.40 16 36 H 0.11 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 39 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.13 2.73 5.64 -52.49 -0.30 2.44 16 42 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -33.46 372.87 -6.29 -39.76 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.19 Total: 2.35 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -2.37 Total: -18.74 kcal Atomic # 7 Polarization: -28.97 SS G_CDS: 1.16 Total: -27.80 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.48 Total: -16.52 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.46 -6.29 -39.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848718196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.213 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds