Wall clock time and date at job start Tue Mar 31 2020 16:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47345 * 2 1 4 4 N 1.30174 * 126.80726 * 270.03168 * 3 2 1 5 5 O 1.20916 * 111.60700 * 179.97438 * 4 3 2 6 6 C 1.34044 * 111.56773 * 359.75859 * 5 4 3 7 7 C 1.35443 * 106.44266 * 0.38118 * 6 5 4 8 8 C 1.50705 * 128.00453 * 179.91404 * 7 6 5 9 9 O 1.45204 * 109.47029 * 359.67546 * 8 7 6 10 10 C 1.34229 * 116.99680 * 180.02562 * 9 8 7 11 11 O 1.20820 * 120.00264 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99692 * 180.02562 * 10 9 8 13 13 C 1.50701 * 109.47242 * 179.97438 * 12 10 9 14 14 C 1.38299 * 119.93217 * 269.72899 * 13 12 10 15 15 C 1.38093 * 120.06953 * 179.72477 * 14 13 12 16 16 C 1.38883 * 119.92808 * 0.56550 * 15 14 13 17 17 O 1.35754 * 120.06438 * 179.68623 * 16 15 14 18 18 C 1.34826 * 116.99724 * 174.49160 * 17 16 15 19 19 H 1.07998 * 120.00100 * 5.04739 * 18 17 16 20 20 C 1.38654 * 119.99970 * 185.05457 * 18 17 16 21 21 N 1.31557 * 120.00012 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99959 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47303 * 60.00249 * 22 20 18 24 24 H 1.48499 * 109.46956 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47359 * 299.99968 * 22 20 18 26 26 C 1.38871 * 119.86468 * 359.70509 * 16 15 14 27 27 C 1.38101 * 119.93230 * 0.02562 * 26 16 15 28 28 H 1.09002 * 109.46883 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47064 * 299.99778 * 1 2 3 30 30 H 1.08998 * 109.47217 * 59.99555 * 1 2 3 31 31 H 1.08998 * 109.47469 * 240.00555 * 2 1 3 32 32 H 1.08997 * 109.47699 * 120.00252 * 2 1 3 33 33 H 1.07997 * 126.77797 * 180.28931 * 6 5 4 34 34 H 1.09009 * 109.46929 * 239.68034 * 8 7 6 35 35 H 1.08992 * 109.47452 * 119.68005 * 8 7 6 36 36 H 1.09002 * 109.47056 * 59.99464 * 12 10 9 37 37 H 1.09001 * 109.46884 * 299.99951 * 12 10 9 38 38 H 1.08005 * 119.96050 * 359.97425 * 14 13 12 39 39 H 1.07999 * 120.03730 * 180.26989 * 15 14 13 40 40 H 0.97002 * 120.00021 * 179.97438 * 21 20 18 41 41 H 1.08002 * 120.03853 * 179.97438 * 26 16 15 42 42 H 1.07997 * 119.96732 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2919 2.1563 -1.0422 5 8 2.6805 3.2565 -0.7252 6 6 2.7255 3.3983 0.6070 7 6 2.3146 2.2194 1.1321 8 6 2.1827 1.8471 2.5864 9 8 2.5809 2.9731 3.4123 10 6 2.5214 2.8041 4.7426 11 8 2.1495 1.7503 5.2017 12 6 2.9187 3.9290 5.6634 13 6 2.7616 3.4855 7.0951 14 6 1.5615 3.6868 7.7522 15 6 1.4126 3.2764 9.0623 16 6 2.4735 2.6716 9.7237 17 8 2.3323 2.2728 11.0137 18 6 3.3595 1.5913 11.5596 19 1 4.2748 1.4563 11.0025 20 6 3.2409 1.0636 12.8363 21 7 2.1261 1.2284 13.5152 22 14 4.6639 0.1188 13.5925 23 1 5.8545 1.0022 13.6787 24 1 4.2871 -0.3374 14.9545 25 1 4.9818 -1.0589 12.7457 26 6 3.6792 2.4759 9.0630 27 6 3.8200 2.8835 7.7510 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.0305 4.2784 1.1536 34 1 2.8246 0.9930 2.8026 35 1 1.1466 1.5866 2.8023 36 1 2.2797 4.7926 5.4787 37 1 3.9581 4.2000 5.4785 38 1 0.7385 4.1618 7.2388 39 1 0.4738 3.4299 9.5735 40 1 2.0429 0.8589 14.4082 41 1 4.5062 2.0063 9.5748 42 1 4.7576 2.7320 7.2368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848718196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:27 Heat of formation + Delta-G solvation = -53.017060 kcal Electronic energy + Delta-G solvation = -26413.603166 eV Core-core repulsion = 22327.180646 eV Total energy + Delta-G solvation = -4086.422520 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.01219 -41.59694 -40.66611 -38.55335 -37.62872 -36.57988 -34.41569 -33.67904 -32.91769 -32.11173 -31.78199 -29.22170 -27.98777 -26.97057 -25.46884 -23.64478 -23.41814 -22.46853 -21.99412 -21.26913 -19.84963 -18.88720 -18.71625 -18.60736 -18.50174 -17.58469 -17.24540 -16.40573 -16.32979 -16.03333 -15.92151 -15.51173 -15.28470 -15.13983 -14.85029 -14.56623 -14.45071 -14.35247 -14.10732 -13.65752 -13.59241 -13.20314 -12.95117 -12.87411 -12.70771 -12.51688 -12.48242 -12.33066 -12.26683 -12.14422 -12.11438 -11.92047 -11.48813 -11.17945 -10.91786 -10.78437 -10.40989 -9.76495 -8.93969 -8.47280 -6.15510 0.50007 0.58759 0.62062 1.08522 1.27829 1.34651 1.44129 1.51030 1.61401 2.17803 2.31599 2.83466 3.06857 3.16227 3.50704 3.52441 3.72965 3.86047 3.97928 4.05144 4.06634 4.17520 4.19731 4.26221 4.29874 4.36896 4.47421 4.57493 4.62279 4.72915 4.78022 4.80875 4.93653 4.96676 5.04462 5.07220 5.14530 5.24918 5.29143 5.39128 5.56272 5.71965 5.74752 6.02765 6.22821 6.80669 6.97204 7.23709 7.78009 8.75658 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.022362 B = 0.001924 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.822445 B =14550.083513 C =14926.438389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.053 4.053 3 C 0.028 3.972 4 N -0.390 5.390 5 O 0.090 5.910 6 C -0.014 4.014 7 C -0.226 4.226 8 C 0.152 3.848 9 O -0.349 6.349 10 C 0.466 3.534 11 O -0.534 6.534 12 C -0.046 4.046 13 C -0.159 4.159 14 C -0.052 4.052 15 C -0.208 4.208 16 C 0.115 3.885 17 O -0.232 6.232 18 C -0.414 4.414 19 H 0.102 0.898 20 C -0.024 4.024 21 N -0.920 5.920 22 Si 1.019 2.981 23 H -0.255 1.255 24 H -0.272 1.272 25 H -0.259 1.259 26 C -0.246 4.246 27 C -0.055 4.055 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.256 0.744 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.151 0.849 39 H 0.112 0.888 40 H 0.273 0.727 41 H 0.118 0.882 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.534 4.586 -27.215 27.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.091 4.091 3 C -0.132 4.132 4 N -0.097 5.097 5 O 0.028 5.972 6 C -0.095 4.095 7 C -0.230 4.230 8 C 0.077 3.923 9 O -0.266 6.266 10 C 0.311 3.689 11 O -0.422 6.422 12 C -0.083 4.083 13 C -0.160 4.160 14 C -0.070 4.070 15 C -0.227 4.227 16 C 0.064 3.936 17 O -0.139 6.139 18 C -0.490 4.490 19 H 0.119 0.881 20 C -0.222 4.222 21 N -0.558 5.558 22 Si 0.838 3.162 23 H -0.179 1.179 24 H -0.196 1.196 25 H -0.184 1.184 26 C -0.265 4.265 27 C -0.073 4.073 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.272 0.728 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.169 0.831 39 H 0.130 0.870 40 H 0.082 0.918 41 H 0.136 0.864 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.082 4.052 -28.091 28.458 hybrid contribution 0.196 -0.859 1.736 1.947 sum 2.278 3.193 -26.355 26.645 Atomic orbital electron populations 1.21708 0.93219 1.03408 1.01907 1.20121 0.97035 0.87098 1.04802 1.23738 1.01717 1.00106 0.87606 1.73877 1.17639 0.93454 1.24768 1.84801 1.62130 1.26199 1.24065 1.26474 0.99371 1.01468 0.82229 1.20929 1.10673 0.95980 0.95463 1.20786 1.01476 0.87242 0.82749 1.86391 1.79165 1.42544 1.18536 1.24381 0.73603 0.89702 0.81243 1.90749 1.44003 1.30201 1.77260 1.20254 1.07456 0.94700 0.85900 1.19209 0.94499 1.06556 0.95699 1.20921 0.97417 0.96631 0.92043 1.20456 0.97691 1.07822 0.96748 1.19997 0.95014 0.93725 0.84831 1.83940 1.42980 1.65218 1.21745 1.21782 0.94127 1.32942 1.00174 0.88116 1.26611 1.01476 0.98202 0.95877 1.70179 1.27966 1.45091 1.12602 0.84648 0.76026 0.78142 0.77404 1.17925 1.19610 1.18372 1.21241 0.97814 1.09854 0.97611 1.20982 0.99242 0.94524 0.92519 0.89921 0.92616 0.93095 0.89411 0.88433 0.72778 0.89682 0.89677 0.83675 0.83907 0.83121 0.86956 0.91834 0.86415 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.89 71.98 0.71 -1.02 16 2 C -0.05 -0.69 6.44 29.85 0.19 -0.50 16 3 C 0.03 0.48 6.58 43.58 0.29 0.76 16 4 N -0.39 -7.84 12.07 -49.56 -0.60 -8.44 16 5 O 0.09 1.52 11.20 71.60 0.80 2.32 16 6 C -0.01 -0.17 11.71 67.17 0.79 0.61 16 7 C -0.23 -3.48 6.28 -19.73 -0.12 -3.60 16 8 C 0.15 2.46 5.98 71.24 0.43 2.88 16 9 O -0.35 -5.64 9.72 -51.41 -0.50 -6.14 16 10 C 0.47 9.80 7.95 71.24 0.57 10.36 16 11 O -0.53 -16.38 15.78 21.98 0.35 -16.04 16 12 C -0.05 -0.77 5.94 29.10 0.17 -0.59 16 13 C -0.16 -4.50 4.38 -19.83 -0.09 -4.58 16 14 C -0.05 -1.67 9.69 22.25 0.22 -1.45 16 15 C -0.21 -8.83 9.99 22.39 0.22 -8.61 16 16 C 0.11 5.76 6.65 22.58 0.15 5.91 16 17 O -0.23 -14.14 9.76 -22.74 -0.22 -14.36 16 18 C -0.41 -24.34 9.49 67.92 0.64 -23.70 16 19 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 20 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 21 N -0.92 -56.91 13.67 21.61 0.30 -56.61 16 22 Si 1.02 43.06 29.55 68.60 2.03 45.08 16 23 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 26 C -0.25 -10.68 9.17 22.39 0.21 -10.47 16 27 C -0.05 -1.80 9.69 22.25 0.22 -1.59 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 33 H 0.26 1.07 8.00 -2.91 -0.02 1.05 16 34 H 0.09 1.42 8.13 -2.38 -0.02 1.40 16 35 H 0.09 1.42 8.13 -2.39 -0.02 1.40 16 36 H 0.15 1.44 8.08 -2.39 -0.02 1.42 16 37 H 0.14 1.48 8.08 -2.39 -0.02 1.46 16 38 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 39 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 40 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 41 H 0.12 5.21 5.64 -2.91 -0.02 5.19 16 42 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -80.18 372.87 8.26 -71.93 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 1.05 Total: 18.76 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 5.05 Total: -36.50 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -0.30 Total: -65.05 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: 0.43 Total: -34.22 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -80.18 8.26 -71.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848718196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.910 kcal (2) G-P(sol) polarization free energy of solvation -80.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds