Wall clock time and date at job start Tue Mar 31 2020 16:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47502 * 2 1 4 4 N 1.30172 * 126.80166 * 270.02796 * 3 2 1 5 5 O 1.20924 * 111.60207 * 179.97438 * 4 3 2 6 6 C 1.34036 * 111.56674 * 359.76450 * 5 4 3 7 7 C 1.35444 * 106.44919 * 0.37656 * 6 5 4 8 8 C 1.50696 * 128.01078 * 179.91531 * 7 6 5 9 9 O 1.45203 * 109.47037 * 359.67790 * 8 7 6 10 10 C 1.34230 * 117.00479 * 180.02562 * 9 8 7 11 11 O 1.20823 * 119.99459 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00327 * 179.97438 * 10 9 8 13 13 C 1.50699 * 109.47151 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96224 * 270.02423 * 13 12 10 15 15 C 1.38281 * 120.13505 * 179.97438 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47063 * 60.00398 * 23 21 19 25 25 H 1.48498 * 109.47240 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47319 * 300.00306 * 23 21 19 27 27 C 1.38073 * 119.96539 * 89.99818 * 13 12 10 28 28 H 1.08998 * 109.46721 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47007 * 300.00023 * 1 2 3 30 30 H 1.09003 * 109.46943 * 60.00280 * 1 2 3 31 31 H 1.09005 * 109.47254 * 239.99498 * 2 1 3 32 32 H 1.08999 * 109.47107 * 120.00454 * 2 1 3 33 33 H 1.08007 * 126.77342 * 180.28467 * 6 5 4 34 34 H 1.09001 * 109.47454 * 239.67965 * 8 7 6 35 35 H 1.08993 * 109.47450 * 119.67682 * 8 7 6 36 36 H 1.09004 * 109.46756 * 59.99766 * 12 10 9 37 37 H 1.08998 * 109.46908 * 300.00408 * 12 10 9 38 38 H 1.08001 * 119.93314 * 359.97438 * 14 13 12 39 39 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 40 40 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 41 41 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 42 42 H 1.07996 * 120.03547 * 0.04988 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2919 2.1561 -1.0423 5 8 2.6807 3.2564 -0.7253 6 6 2.7256 3.3982 0.6068 7 6 2.3147 2.2193 1.1321 8 6 2.1828 1.8470 2.5864 9 8 2.5810 2.9730 3.4122 10 6 2.5216 2.8042 4.7425 11 8 2.1496 1.7504 5.2017 12 6 2.9200 3.9287 5.6633 13 6 2.7639 3.4849 7.0950 14 6 1.5624 3.6807 7.7519 15 6 1.4150 3.2743 9.0654 16 6 2.4658 2.6656 9.7235 17 6 3.6750 2.4728 9.0687 18 8 4.7115 1.8803 9.7147 19 6 4.5430 1.6120 11.0252 20 1 3.5873 1.7926 11.4948 21 6 5.5965 1.1041 11.7699 22 7 6.7607 0.8846 11.1980 23 14 5.3632 0.7330 13.5858 24 1 4.2877 -0.2776 13.7502 25 1 6.6309 0.2037 14.1497 26 1 4.9857 1.9784 14.3011 27 6 3.8201 2.8829 7.7494 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.0308 4.2783 1.1535 34 1 2.8246 0.9930 2.8026 35 1 1.1466 1.5867 2.8022 36 1 2.2817 4.7929 5.4787 37 1 3.9596 4.1988 5.4783 38 1 0.7376 4.1518 7.2378 39 1 0.4759 3.4289 9.5757 40 1 2.3485 2.3438 10.7477 41 1 7.4978 0.5296 11.7191 42 1 4.7580 2.7307 7.2361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848733968.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:31 Heat of formation + Delta-G solvation = -32.860186 kcal Electronic energy + Delta-G solvation = -26542.568687 eV Core-core repulsion = 22457.020234 eV Total energy + Delta-G solvation = -4085.548453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.29019 -40.57866 -39.02432 -37.16969 -36.38553 -35.83769 -32.98547 -32.46085 -32.08920 -31.44042 -29.34139 -28.35030 -26.94232 -25.27837 -24.85712 -22.54155 -21.73945 -21.59403 -21.09098 -20.28362 -18.03664 -17.88112 -17.70191 -17.54783 -17.02473 -16.65644 -16.19728 -15.36934 -15.14872 -14.72613 -14.66308 -14.42999 -14.01472 -13.86930 -13.70979 -13.49325 -13.45961 -13.04430 -12.73845 -12.52423 -12.33603 -12.02109 -11.96410 -11.95010 -11.61714 -11.34287 -11.30667 -11.17025 -10.90056 -10.84003 -10.68374 -10.48535 -10.42156 -10.20924 -9.70326 -9.37843 -8.85267 -8.16331 -7.27004 -6.45676 -4.04998 1.15990 1.79272 1.87370 2.24753 2.32387 2.58595 2.95062 3.12724 3.13784 3.16449 3.72625 3.95524 4.14742 4.40198 4.56504 4.68284 4.76820 4.83131 4.84512 4.92091 4.95261 4.99735 5.06993 5.12138 5.32517 5.35836 5.43551 5.46588 5.57833 5.59842 5.61734 5.69252 5.80123 5.87177 6.11831 6.27322 6.28266 6.60397 6.85704 7.02970 7.17803 7.31930 7.39888 7.74127 7.77704 7.91507 7.98770 8.99758 9.69273 10.72283 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.020458 B = 0.002016 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.346184 B =13884.123654 C =14161.697517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C 0.033 3.967 4 N -0.362 5.362 5 O 0.097 5.903 6 C -0.030 4.030 7 C -0.210 4.210 8 C 0.149 3.851 9 O -0.363 6.363 10 C 0.463 3.537 11 O -0.485 6.485 12 C -0.062 4.062 13 C -0.046 4.046 14 C -0.195 4.195 15 C -0.074 4.074 16 C -0.227 4.227 17 C 0.154 3.846 18 O -0.177 6.177 19 C -0.392 4.392 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.863 5.863 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.172 4.172 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.224 0.776 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.270 0.730 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.127 4.718 -18.811 21.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 C -0.127 4.127 4 N -0.067 5.067 5 O 0.033 5.967 6 C -0.111 4.111 7 C -0.214 4.214 8 C 0.074 3.926 9 O -0.281 6.281 10 C 0.305 3.695 11 O -0.369 6.369 12 C -0.100 4.100 13 C -0.046 4.046 14 C -0.214 4.214 15 C -0.092 4.092 16 C -0.246 4.246 17 C 0.100 3.900 18 O -0.081 6.081 19 C -0.469 4.469 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.766 3.234 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.191 4.191 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.240 0.760 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.080 0.920 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.839 4.003 -20.024 22.667 hybrid contribution -0.190 -0.359 1.852 1.896 sum -10.028 3.645 -18.173 21.074 Atomic orbital electron populations 1.21729 0.93678 1.02632 1.02499 1.20013 0.96665 0.87935 1.04218 1.23371 1.02311 0.99358 0.87618 1.73873 1.16186 0.92773 1.23877 1.84826 1.62138 1.26547 1.23163 1.25864 1.01308 1.01049 0.82888 1.20928 1.09310 0.95298 0.95889 1.20807 1.01531 0.87562 0.82668 1.86406 1.79763 1.42563 1.19395 1.23893 0.74952 0.89989 0.80691 1.90741 1.41599 1.28124 1.76441 1.20269 1.04863 0.94908 0.89917 1.18646 0.94243 0.99690 0.92050 1.20369 0.96640 1.08630 0.95756 1.20691 0.97482 0.96847 0.94226 1.21210 0.93949 1.07646 1.01808 1.19265 0.88145 0.90731 0.91862 1.83976 1.34319 1.65948 1.23849 1.21274 0.99190 1.44423 0.81974 0.89116 1.25284 0.94367 0.96616 1.00222 1.70025 1.01745 1.41195 1.36819 0.85783 0.78068 0.79092 0.80499 1.19501 1.20278 1.19489 1.19966 0.99374 1.06001 0.93772 0.91328 0.92227 0.92347 0.89727 0.89338 0.75991 0.89398 0.89519 0.87041 0.86897 0.87731 0.87309 0.85495 0.91962 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.90 37.16 0.37 -0.62 16 2 C -0.05 -0.38 6.44 -27.88 -0.18 -0.56 16 3 C 0.03 0.32 6.58 -82.10 -0.54 -0.22 16 4 N -0.36 -4.00 12.07 33.42 0.40 -3.60 16 5 O 0.10 0.95 11.20 17.19 0.19 1.15 16 6 C -0.03 -0.24 11.71 29.74 0.35 0.11 16 7 C -0.21 -1.98 6.28 -104.43 -0.66 -2.63 16 8 C 0.15 1.48 5.98 36.00 0.22 1.70 16 9 O -0.36 -3.96 9.72 -39.26 -0.38 -4.34 16 10 C 0.46 6.25 7.95 36.01 0.29 6.53 16 11 O -0.48 -8.45 15.78 -18.75 -0.30 -8.74 16 12 C -0.06 -0.76 5.94 -29.04 -0.17 -0.93 16 13 C -0.05 -0.79 4.37 -104.65 -0.46 -1.24 16 14 C -0.19 -3.30 9.70 -39.53 -0.38 -3.68 16 15 C -0.07 -1.36 10.04 -39.61 -0.40 -1.75 16 16 C -0.23 -4.93 9.17 -39.40 -0.36 -5.29 16 17 C 0.15 3.71 6.65 -39.11 -0.26 3.45 16 18 O -0.18 -5.06 9.76 0.05 0.00 -5.06 16 19 C -0.39 -10.94 9.49 30.89 0.29 -10.65 16 20 H 0.09 2.33 5.21 -52.49 -0.27 2.06 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.25 13.67 55.48 0.76 -24.50 16 23 Si 0.94 20.44 29.55 -169.99 -5.02 15.41 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 27 C -0.17 -3.58 9.65 -39.39 -0.38 -3.96 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.22 1.11 8.00 -52.48 -0.42 0.69 16 34 H 0.09 0.90 8.13 -51.93 -0.42 0.47 16 35 H 0.09 0.84 8.13 -51.93 -0.42 0.41 16 36 H 0.11 1.01 8.09 -51.93 -0.42 0.59 16 37 H 0.11 1.16 8.08 -51.93 -0.42 0.74 16 38 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 40 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 41 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -33.80 372.87 -6.29 -40.09 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.19 Total: 2.73 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -2.37 Total: -18.76 kcal Atomic # 7 Polarization: -29.26 SS G_CDS: 1.16 Total: -28.10 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.48 Total: -17.00 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.80 -6.29 -40.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848733968.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.229 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds