Wall clock time and date at job start Tue Mar 31 2020 17:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47023 * 106.48574 * 3 2 1 5 5 C 1.36946 * 119.99502 * 276.67547 * 4 3 2 6 6 H 1.07992 * 119.99767 * 143.50419 * 5 4 3 7 7 C 1.38816 * 119.99758 * 323.49782 * 5 4 3 8 8 N 1.31615 * 119.99618 * 160.32216 * 7 5 4 9 9 Si 1.86803 * 119.99999 * 340.31626 * 7 5 4 10 10 H 1.48496 * 109.47161 * 90.82399 * 9 7 5 11 11 H 1.48496 * 109.46908 * 210.82331 * 9 7 5 12 12 H 1.48497 * 109.47393 * 330.82229 * 9 7 5 13 13 S 1.65595 * 120.00596 * 96.67346 * 4 3 2 14 14 O 1.42098 * 104.27503 * 333.92838 * 13 4 3 15 15 O 1.42100 * 104.28107 * 206.07129 * 13 4 3 16 16 C 1.81399 * 104.44920 * 89.99774 * 13 4 3 17 17 C 1.53001 * 109.47293 * 179.97438 * 16 13 4 18 18 O 1.42906 * 110.45482 * 62.95070 * 17 16 13 19 19 C 1.42903 * 113.99969 * 64.50400 * 18 17 16 20 20 C 1.53001 * 109.46864 * 141.16248 * 19 18 17 21 21 C 1.52993 * 109.47464 * 261.16596 * 19 18 17 22 22 C 1.54509 * 110.51111 * 185.55181 * 17 16 13 23 23 C 1.54487 * 104.05931 * 118.64938 * 22 17 16 24 24 O 1.44424 * 104.80262 * 23.97984 * 23 22 17 25 25 C 1.44429 * 105.27200 * 319.48621 * 24 23 22 26 26 H 4.40636 * 5.51445 * 179.97438 * 4 1 2 27 27 H 1.08994 * 109.47719 * 346.48225 * 3 2 1 28 28 H 1.09002 * 109.47176 * 226.47707 * 3 2 1 29 29 H 0.97001 * 119.99697 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.47460 * 60.00487 * 16 13 4 31 31 H 1.09005 * 109.47239 * 300.00271 * 16 13 4 32 32 H 1.08998 * 109.46906 * 21.16739 * 19 18 17 33 33 H 1.08998 * 109.46958 * 60.00523 * 20 19 18 34 34 H 1.09005 * 109.46975 * 180.02562 * 20 19 18 35 35 H 1.09001 * 109.47531 * 299.99991 * 20 19 18 36 36 H 1.08999 * 109.47305 * 65.49123 * 21 19 18 37 37 H 1.09003 * 109.47347 * 185.49759 * 21 19 18 38 38 H 1.09005 * 109.46906 * 305.49465 * 21 19 18 39 39 H 1.08998 * 110.51346 * 237.28830 * 22 17 16 40 40 H 1.08995 * 110.51130 * 359.86735 * 22 17 16 41 41 H 1.08997 * 110.37313 * 142.80993 * 23 22 17 42 42 H 1.08995 * 110.36792 * 265.03544 * 23 22 17 43 43 H 1.08996 * 110.37697 * 281.67602 * 25 24 23 44 44 H 1.09015 * 110.36736 * 159.34597 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.3928 -1.3245 5 6 3.2327 -0.5405 -2.3218 6 1 3.0087 -0.2662 -3.3420 7 6 3.6208 -1.8390 -2.0212 8 7 3.3535 -2.8166 -2.8608 9 14 4.5226 -2.1986 -0.4253 10 1 3.5380 -2.5305 0.6356 11 1 5.4420 -3.3475 -0.6244 12 1 5.3046 -1.0036 -0.0184 13 16 3.5665 1.9646 -1.6157 14 8 2.8018 2.7168 -0.6837 15 8 3.3807 2.1257 -3.0152 16 6 5.3298 2.0342 -1.1955 17 6 5.8535 3.4532 -1.4261 18 8 5.1913 4.3768 -0.5597 19 6 5.4492 4.1585 0.8288 20 6 5.5945 5.5061 1.5385 21 6 4.2868 3.3792 1.4472 22 6 7.3823 3.5080 -1.2090 23 6 7.9407 3.9464 -2.5810 24 8 6.8465 4.6389 -3.2206 25 6 5.6691 3.8648 -2.9034 26 1 -1.0501 -0.0002 0.0001 27 1 3.0098 -0.9983 0.2402 28 1 3.0090 0.7085 0.7452 29 1 3.6251 -3.7239 -2.6510 30 1 5.8815 1.3369 -1.8261 31 1 5.4649 1.7622 -0.1486 32 1 6.3705 3.5872 0.9418 33 1 4.6732 6.0775 1.4256 34 1 5.7917 5.3397 2.5976 35 1 6.4227 6.0614 1.0981 36 1 4.2443 2.3819 1.0093 37 1 4.4362 3.2973 2.5238 38 1 3.3518 3.9032 1.2489 39 1 7.6331 4.2414 -0.4426 40 1 7.7646 2.5248 -0.9351 41 1 8.7890 4.6179 -2.4485 42 1 8.2349 3.0755 -3.1667 43 1 5.6131 2.9814 -3.5394 44 1 4.7723 4.4738 -3.0186 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851787012.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:18 Heat of formation + Delta-G solvation = -102.312726 kcal Electronic energy + Delta-G solvation = -29238.882736 eV Core-core repulsion = 25285.766547 eV Total energy + Delta-G solvation = -3953.116190 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.37302 -38.73336 -38.23974 -37.80830 -36.64192 -34.43795 -34.34766 -33.21851 -32.66222 -30.96150 -28.54152 -28.35445 -27.43429 -25.93740 -24.16845 -22.73256 -21.10609 -20.30260 -20.10172 -18.92760 -18.46893 -18.24222 -17.69890 -17.33843 -16.87018 -16.62021 -16.37828 -16.13763 -15.90053 -15.38405 -15.15077 -15.01227 -14.75812 -14.55208 -14.31993 -14.08221 -13.70440 -13.41847 -13.35533 -13.13686 -13.04813 -12.94575 -12.73001 -12.62654 -12.59835 -12.44991 -12.40362 -12.27537 -11.99726 -11.95225 -11.60225 -11.47252 -11.31411 -11.20421 -10.85961 -10.69769 -10.69029 -10.18713 -8.54826 -6.18588 -0.51316 1.22749 1.31470 1.42665 1.65090 1.96300 2.17704 2.28373 2.41094 2.74446 2.78132 3.10902 3.20210 3.40933 3.52692 3.60673 3.63908 3.89998 4.03673 4.08820 4.14644 4.18568 4.23076 4.26425 4.32636 4.33998 4.52369 4.58370 4.71569 4.75815 4.81047 4.86673 4.91237 4.96132 4.97374 4.99355 5.17822 5.32548 5.52633 5.55540 5.60944 6.17384 6.19590 6.75146 6.91154 6.97486 8.58092 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013534 B = 0.005828 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.390541 B = 4803.299825 C = 5468.601076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.224 4.224 3 C 0.205 3.795 4 N -0.852 5.852 5 C -0.303 4.303 6 H 0.070 0.930 7 C 0.025 3.975 8 N -0.888 5.888 9 Si 0.921 3.079 10 H -0.251 1.251 11 H -0.280 1.280 12 H -0.222 1.222 13 S 2.541 3.459 14 O -0.975 6.975 15 O -1.000 7.000 16 C -0.667 4.667 17 C 0.101 3.899 18 O -0.380 6.380 19 C 0.063 3.937 20 C -0.147 4.147 21 C -0.176 4.176 22 C -0.167 4.167 23 C 0.035 3.965 24 O -0.381 6.381 25 C 0.036 3.964 26 H 0.253 0.747 27 H 0.085 0.915 28 H 0.118 0.882 29 H 0.284 0.716 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.040 0.960 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.122 0.878 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.251 8.513 11.862 17.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.226 4.226 3 C 0.081 3.919 4 N -0.678 5.678 5 C -0.442 4.442 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.525 5.525 9 Si 0.744 3.256 10 H -0.178 1.178 11 H -0.206 1.206 12 H -0.144 1.144 13 S 2.644 3.356 14 O -0.965 6.965 15 O -0.991 6.991 16 C -0.794 4.794 17 C 0.059 3.941 18 O -0.300 6.300 19 C 0.007 3.993 20 C -0.204 4.204 21 C -0.233 4.233 22 C -0.206 4.206 23 C -0.041 4.041 24 O -0.300 6.300 25 C -0.041 4.041 26 H 0.269 0.731 27 H 0.102 0.898 28 H 0.136 0.864 29 H 0.094 0.906 30 H 0.168 0.832 31 H 0.170 0.830 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.140 0.860 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.646 9.528 11.321 17.664 hybrid contribution 0.265 -1.348 0.240 1.395 sum 9.911 8.180 11.561 17.286 Atomic orbital electron populations 1.25719 0.96783 1.00284 0.98508 1.23949 0.95808 1.01089 1.01760 1.18712 0.85173 1.02287 0.85730 1.53381 1.70406 1.27617 1.16431 1.18704 1.45058 0.90876 0.89541 0.91218 1.26331 0.95452 0.94864 1.01759 1.69923 1.41807 1.01295 1.39498 0.86257 0.79746 0.80452 0.79147 1.17794 1.20598 1.14382 1.08856 0.78966 0.73960 0.73859 1.93472 1.68690 1.70708 1.63624 1.93416 1.86256 1.85787 1.33641 1.31492 1.29731 1.04268 1.13887 1.22478 0.94720 0.85467 0.91441 1.88084 1.71234 1.53208 1.17517 1.22503 0.98398 0.98567 0.79846 1.21925 1.02508 0.95085 1.00889 1.22543 0.99588 0.99732 1.01466 1.23650 0.91608 1.05228 1.00086 1.23722 0.90597 0.98316 0.91424 1.89126 1.16599 1.49504 1.74765 1.23708 0.90567 0.97442 0.92389 0.73104 0.89798 0.86418 0.90578 0.83163 0.82963 0.89528 0.92878 0.88748 0.91546 0.94146 0.89263 0.92180 0.87713 0.87166 0.85990 0.90659 0.89739 0.89540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.14 19.25 74.32 1.43 -5.71 16 2 C -0.22 -9.47 13.61 31.13 0.42 -9.04 16 3 C 0.21 8.37 4.75 84.57 0.40 8.77 16 4 N -0.85 -39.30 2.41 -352.50 -0.85 -40.15 16 5 C -0.30 -16.19 9.50 84.03 0.80 -15.39 16 6 H 0.07 4.31 7.50 -2.91 -0.02 4.29 16 7 C 0.02 1.25 5.37 84.86 0.46 1.71 16 8 N -0.89 -48.80 13.97 21.65 0.30 -48.50 16 9 Si 0.92 35.97 25.00 68.60 1.72 37.69 16 10 H -0.25 -9.25 6.53 99.48 0.65 -8.60 16 11 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 12 H -0.22 -7.22 7.11 99.48 0.71 -6.51 16 13 S 2.54 110.33 4.59 -56.49 -0.26 110.07 16 14 O -0.98 -43.10 12.86 -125.22 -1.61 -44.71 16 15 O -1.00 -51.41 15.15 -127.65 -1.93 -53.34 16 16 C -0.67 -21.32 4.27 71.98 0.31 -21.02 16 17 C 0.10 3.02 0.71 -9.78 -0.01 3.01 16 18 O -0.38 -12.00 8.98 -147.74 -1.33 -13.33 16 19 C 0.06 1.53 2.22 30.59 0.07 1.60 16 20 C -0.15 -2.81 9.56 71.98 0.69 -2.12 16 21 C -0.18 -4.65 7.69 71.98 0.55 -4.10 16 22 C -0.17 -3.51 5.47 31.61 0.17 -3.33 16 23 C 0.04 0.76 7.63 72.49 0.55 1.31 16 24 O -0.38 -11.80 11.65 -148.98 -1.74 -13.54 16 25 C 0.04 1.25 5.51 72.48 0.40 1.65 16 26 H 0.25 6.53 7.80 -4.41 -0.03 6.49 16 27 H 0.08 3.32 2.51 -2.39 -0.01 3.31 16 28 H 0.12 3.96 6.40 -2.39 -0.02 3.94 16 29 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 30 H 0.15 4.46 8.14 -2.39 -0.02 4.44 16 31 H 0.15 4.02 5.72 -2.39 -0.01 4.01 16 32 H 0.09 1.65 6.14 -2.39 -0.01 1.64 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.04 1.13 3.42 -2.39 -0.01 1.12 16 37 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 1.92 7.31 -2.38 -0.02 1.90 16 39 H 0.10 1.84 6.92 -2.39 -0.02 1.83 16 40 H 0.11 1.83 7.73 -2.39 -0.02 1.82 16 41 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.08 3.03 7.14 -2.39 -0.02 3.01 16 44 H 0.09 3.26 8.09 -2.38 -0.02 3.24 16 Total: -1.00 -72.03 352.91 1.50 -70.52 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: 0.95 Total: 37.94 kcal Atomic # 6 Polarization: -48.91 SS G_CDS: 6.25 Total: -42.66 kcal Atomic # 7 Polarization: -88.10 SS G_CDS: -0.55 Total: -88.65 kcal Atomic # 8 Polarization: -118.31 SS G_CDS: -6.61 Total: -124.92 kcal Atomic # 14 Polarization: 35.97 SS G_CDS: 1.72 Total: 37.69 kcal Atomic # 16 Polarization: 110.33 SS G_CDS: -0.26 Total: 110.07 kcal Total: -72.03 1.50 -70.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851787012.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.789 kcal (2) G-P(sol) polarization free energy of solvation -72.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds