Wall clock time and date at job start Tue Mar 31 2020 16:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.44392 * 2 1 4 4 O 1.20832 * 120.00219 * 95.00119 * 3 2 1 5 5 O 1.34236 * 120.00333 * 275.00236 * 3 2 1 6 6 C 1.45200 * 117.00110 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46888 * 180.02562 * 6 5 3 8 8 C 1.50703 * 115.55126 * 39.89122 * 7 6 5 9 9 H 1.07998 * 119.99985 * 264.97135 * 8 7 6 10 10 C 1.37868 * 119.99748 * 84.97146 * 8 7 6 11 11 N 1.31513 * 120.00423 * 358.48181 * 10 8 7 12 12 Si 1.86806 * 119.99916 * 178.48394 * 10 8 7 13 13 H 1.48492 * 109.47301 * 59.99950 * 12 10 8 14 14 H 1.48500 * 109.47076 * 180.02562 * 12 10 8 15 15 H 1.48508 * 109.46962 * 299.99781 * 12 10 8 16 16 C 1.53001 * 117.49660 * 254.18692 * 7 6 5 17 17 C 1.53000 * 117.49759 * 185.56560 * 7 6 5 18 18 O 1.42990 * 109.44188 * 240.06975 * 2 1 3 19 19 C 1.35920 * 116.75475 * 193.56213 * 18 2 1 20 20 C 1.38393 * 120.67901 * 212.90401 * 19 18 2 21 21 C 1.38317 * 119.87240 * 179.97438 * 20 19 18 22 22 C 1.38274 * 120.25852 * 359.96514 * 21 20 19 23 23 C 1.38285 * 120.20101 * 0.02562 * 22 21 20 24 24 C 1.38502 * 119.81862 * 0.02562 * 23 22 21 25 25 N 1.40208 * 120.74832 * 179.97438 * 24 23 22 26 26 C 1.35093 * 118.98419 * 164.54003 * 25 24 23 27 27 O 1.21287 * 120.13413 * 178.30411 * 26 25 24 28 28 H 1.08998 * 109.47073 * 59.99695 * 1 2 3 29 29 H 1.09001 * 109.47039 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47087 * 299.99752 * 1 2 3 31 31 H 1.09000 * 109.46705 * 300.00087 * 6 5 3 32 32 H 1.08994 * 109.47057 * 59.99874 * 6 5 3 33 33 H 0.97001 * 120.00200 * 179.97438 * 11 10 8 34 34 H 1.08996 * 117.50030 * 359.97438 * 16 7 6 35 35 H 1.09000 * 117.49838 * 145.02484 * 16 7 6 36 36 H 1.09002 * 117.49809 * 214.97923 * 17 7 6 37 37 H 1.09001 * 117.49967 * 359.97438 * 17 7 6 38 38 H 1.07997 * 120.06623 * 359.93980 * 20 19 18 39 39 H 1.08003 * 119.87236 * 179.97438 * 21 20 19 40 40 H 1.08005 * 119.89689 * 180.02562 * 22 21 20 41 41 H 1.08002 * 120.09233 * 180.02562 * 23 22 21 42 42 H 0.96999 * 120.51109 * 344.51251 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0317 1.4210 0.0000 4 8 2.3188 1.9604 1.0424 5 8 2.1595 2.0877 -1.1581 6 6 2.6479 3.4530 -1.0822 7 6 2.7258 4.0457 -2.4906 8 6 1.5863 3.6887 -3.4100 9 1 1.6814 2.8545 -4.0892 10 6 0.4224 4.4273 -3.3840 11 7 0.2951 5.4245 -2.5361 12 14 -0.9740 4.0113 -4.5531 13 1 -1.4272 2.6188 -4.3073 14 1 -2.1044 4.9475 -4.3269 15 1 -0.5002 4.1377 -5.9549 16 6 4.1139 4.2050 -3.1142 17 6 3.3430 5.4379 -2.6381 18 8 2.0060 -0.6728 -1.1685 19 6 3.3222 -1.0114 -1.1862 20 6 4.0336 -1.0184 -2.3733 21 6 5.3726 -1.3652 -2.3720 22 6 6.0034 -1.7042 -1.1891 23 6 5.2991 -1.6992 0.0010 24 6 3.9579 -1.3539 0.0062 25 7 3.2251 -1.3430 1.2015 26 6 2.0315 -0.7109 1.2318 27 8 1.3661 -0.7147 2.2458 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.9671 4.0492 -0.4747 32 1 3.6394 3.4596 -0.6295 33 1 -0.5237 5.9444 -2.5181 34 1 4.9715 3.8880 -2.5210 35 1 4.2031 4.0516 -4.1897 36 1 2.9251 6.0955 -3.4002 37 1 3.6932 5.9317 -1.7316 38 1 3.5441 -0.7542 -3.2990 39 1 5.9277 -1.3711 -3.2984 40 1 7.0492 -1.9736 -1.1947 41 1 5.7937 -1.9639 0.9240 42 1 3.5696 -1.7828 1.9944 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869585863.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:26 Heat of formation + Delta-G solvation = -107.088004 kcal Electronic energy + Delta-G solvation = -29518.028398 eV Core-core repulsion = 25429.261185 eV Total energy + Delta-G solvation = -4088.767212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.22630 -41.29813 -40.17461 -38.85444 -38.55792 -37.16931 -36.39085 -33.99319 -33.72686 -31.31731 -30.05794 -28.96928 -27.40510 -26.72200 -24.72920 -23.96730 -23.40631 -22.94077 -21.26933 -20.61627 -20.38401 -19.18114 -18.74801 -18.63790 -17.71245 -17.69111 -17.27624 -16.67262 -16.52966 -16.25265 -15.93004 -15.62471 -15.59074 -15.14996 -14.89264 -14.56358 -14.37092 -14.12307 -14.05580 -13.63736 -13.51108 -13.46738 -13.27912 -12.91260 -12.80084 -12.77400 -12.40662 -12.25993 -12.15519 -11.97095 -11.88534 -11.75577 -11.53770 -11.30875 -10.89643 -10.46356 -10.03414 -9.72807 -9.11828 -8.10110 -6.20469 -0.10701 0.22232 0.65500 0.69441 1.34871 1.44688 1.45768 1.52733 1.68731 1.91657 2.44982 2.56312 2.73795 3.17181 3.19731 3.31662 3.44341 3.51356 4.02191 4.06722 4.22239 4.28731 4.32037 4.36022 4.40496 4.41254 4.51587 4.60631 4.70738 4.78289 4.82443 4.96669 4.99280 5.11249 5.14947 5.23098 5.34273 5.48871 5.49822 5.55279 5.60671 5.63460 5.77888 6.07606 6.31854 6.45968 6.48333 6.83697 7.47824 8.98748 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012515 B = 0.004748 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.762232 B = 5896.392777 C = 6610.472878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.122 3.878 3 C 0.440 3.560 4 O -0.528 6.528 5 O -0.309 6.309 6 C 0.124 3.876 7 C 0.003 3.997 8 C -0.489 4.489 9 H 0.057 0.943 10 C 0.025 3.975 11 N -0.913 5.913 12 Si 0.946 3.054 13 H -0.270 1.270 14 H -0.288 1.288 15 H -0.268 1.268 16 C -0.176 4.176 17 C -0.146 4.146 18 O -0.282 6.282 19 C 0.035 3.965 20 C -0.108 4.108 21 C -0.102 4.102 22 C -0.099 4.099 23 C -0.118 4.118 24 C 0.065 3.935 25 N -0.641 5.641 26 C 0.516 3.484 27 O -0.511 6.511 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.041 0.959 32 H 0.054 0.946 33 H 0.259 0.741 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.141 0.859 39 H 0.166 0.834 40 H 0.172 0.828 41 H 0.164 0.836 42 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.144 -16.522 1.916 20.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.078 3.922 3 C 0.282 3.718 4 O -0.419 6.419 5 O -0.223 6.223 6 C 0.050 3.950 7 C 0.002 3.998 8 C -0.527 4.527 9 H 0.075 0.925 10 C -0.175 4.175 11 N -0.551 5.551 12 Si 0.771 3.229 13 H -0.195 1.195 14 H -0.214 1.214 15 H -0.193 1.193 16 C -0.213 4.213 17 C -0.184 4.184 18 O -0.197 6.197 19 C -0.011 4.011 20 C -0.127 4.127 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.138 4.138 24 C -0.030 4.030 25 N -0.289 5.289 26 C 0.300 3.700 27 O -0.386 6.386 28 H 0.111 0.889 29 H 0.132 0.868 30 H 0.112 0.888 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.159 0.841 39 H 0.183 0.817 40 H 0.190 0.810 41 H 0.181 0.819 42 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 10.492 -16.122 2.556 19.405 hybrid contribution -1.008 0.445 0.338 1.153 sum 9.484 -15.677 2.895 18.550 Atomic orbital electron populations 1.21883 0.84791 1.06968 1.05404 1.21943 1.00539 0.84905 0.84815 1.24160 0.74890 0.89901 0.82857 1.90658 1.47143 1.70069 1.34056 1.86657 1.75061 1.28804 1.31741 1.22647 0.95895 0.76995 0.99440 1.18857 0.93021 0.96785 0.91125 1.20475 0.98273 1.14074 1.19890 0.92498 1.25651 1.00349 0.94754 0.96777 1.70093 1.27392 1.20440 1.37163 0.85797 0.78982 0.78171 0.79906 1.19540 1.21364 1.19285 1.23121 0.94751 1.02688 1.00729 1.22456 1.03488 0.91189 1.01254 1.86384 1.23132 1.72350 1.37847 1.19148 0.83528 1.03682 0.94698 1.20903 0.94772 1.00763 0.96230 1.21475 0.92400 0.97567 1.00632 1.21500 1.01709 0.97964 0.90578 1.21055 0.89471 1.01717 1.01580 1.18399 0.94221 1.06094 0.84239 1.43457 1.18402 1.53367 1.13678 1.20385 0.81796 0.79085 0.88704 1.90755 1.56142 1.59350 1.32333 0.88919 0.86813 0.88805 0.94105 0.92793 0.93196 0.89002 0.89254 0.91097 0.90692 0.84141 0.81662 0.81032 0.81883 0.72554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 8.40 71.98 0.60 -3.57 16 2 C 0.12 4.34 1.06 -12.25 -0.01 4.33 16 3 C 0.44 18.90 6.42 71.23 0.46 19.36 16 4 O -0.53 -24.78 16.01 21.95 0.35 -24.42 16 5 O -0.31 -14.44 9.36 -46.53 -0.44 -14.88 16 6 C 0.12 5.94 5.53 71.98 0.40 6.34 16 7 C 0.00 0.12 1.81 -52.93 -0.10 0.03 16 8 C -0.49 -26.19 8.24 25.60 0.21 -25.98 16 9 H 0.06 3.04 7.81 -2.91 -0.02 3.01 16 10 C 0.02 1.33 5.41 84.65 0.46 1.79 16 11 N -0.91 -51.95 12.80 21.44 0.27 -51.68 16 12 Si 0.95 42.91 29.54 68.60 2.03 44.93 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 14 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 15 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 16 C -0.18 -7.12 9.88 30.60 0.30 -6.82 16 17 C -0.15 -6.64 9.33 30.59 0.29 -6.35 16 18 O -0.28 -9.54 9.61 -79.34 -0.76 -10.30 16 19 C 0.03 1.02 6.06 22.59 0.14 1.16 16 20 C -0.11 -2.62 10.00 22.33 0.22 -2.40 16 21 C -0.10 -1.69 10.04 22.30 0.22 -1.46 16 22 C -0.10 -1.34 10.04 22.29 0.22 -1.12 16 23 C -0.12 -1.97 9.95 22.34 0.22 -1.75 16 24 C 0.07 1.62 6.55 38.14 0.25 1.87 16 25 N -0.64 -16.60 5.47 -302.65 -1.66 -18.26 16 26 C 0.52 17.22 6.29 87.64 0.55 17.77 16 27 O -0.51 -18.87 17.01 -3.05 -0.05 -18.93 16 28 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 29 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.09 2.98 7.86 -2.38 -0.02 2.96 16 31 H 0.04 2.17 8.13 -2.39 -0.02 2.15 16 32 H 0.05 2.38 7.94 -2.39 -0.02 2.36 16 33 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 34 H 0.09 3.23 8.08 -2.39 -0.02 3.21 16 35 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 36 H 0.07 3.45 8.14 -2.39 -0.02 3.43 16 37 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 39 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.17 1.01 8.06 -2.91 -0.02 0.98 16 41 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 42 H 0.43 8.35 8.89 -92.71 -0.82 7.52 16 Total: -1.00 -71.11 366.11 4.42 -66.69 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.24 Total: 23.67 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 4.44 Total: 3.18 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -1.38 Total: -69.94 kcal Atomic # 8 Polarization: -67.63 SS G_CDS: -0.90 Total: -68.52 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -71.11 4.42 -66.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869585863.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.398 kcal (2) G-P(sol) polarization free energy of solvation -71.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds