Wall clock time and date at job start Tue Mar 31 2020 16:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50705 * 109.43957 * 2 1 4 4 O 1.20831 * 119.99816 * 264.96792 * 3 2 1 5 5 O 1.34230 * 120.00317 * 84.96771 * 3 2 1 6 6 C 1.45200 * 117.00148 * 185.07897 * 5 3 2 7 7 C 1.52996 * 109.47168 * 184.77953 * 6 5 3 8 8 C 1.50702 * 115.55242 * 275.61666 * 7 6 5 9 9 H 1.07991 * 120.00307 * 114.58009 * 8 7 6 10 10 C 1.37880 * 119.99313 * 294.58707 * 8 7 6 11 11 N 1.31504 * 120.00425 * 352.81510 * 10 8 7 12 12 Si 1.86800 * 119.99492 * 172.82011 * 10 8 7 13 13 H 1.48497 * 109.47529 * 64.99755 * 12 10 8 14 14 H 1.48501 * 109.47111 * 184.99596 * 12 10 8 15 15 H 1.48500 * 109.47297 * 304.99288 * 12 10 8 16 16 C 1.53001 * 117.49798 * 129.90492 * 7 6 5 17 17 C 1.53004 * 117.49660 * 61.27943 * 7 6 5 18 18 O 1.42997 * 109.44887 * 119.89685 * 2 1 3 19 19 C 1.35976 * 116.71891 * 166.44743 * 18 2 1 20 20 C 1.38396 * 120.67783 * 147.15063 * 19 18 2 21 21 C 1.38306 * 119.88109 * 180.13014 * 20 19 18 22 22 C 1.38285 * 120.25861 * 0.02562 * 21 20 19 23 23 C 1.38280 * 120.19340 * 0.23730 * 22 21 20 24 24 C 1.38503 * 119.81895 * 359.45962 * 23 22 21 25 25 N 1.40214 * 120.73749 * 180.31259 * 24 23 22 26 26 C 1.35088 * 118.97952 * 195.79736 * 25 24 23 27 27 O 1.21296 * 120.13572 * 181.69020 * 26 25 24 28 28 H 1.08999 * 109.46785 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47150 * 299.92771 * 1 2 3 30 30 H 1.08997 * 109.47249 * 59.93709 * 1 2 3 31 31 H 1.08996 * 109.47004 * 304.78072 * 6 5 3 32 32 H 1.09002 * 109.46958 * 64.78183 * 6 5 3 33 33 H 0.97001 * 120.00319 * 185.01605 * 11 10 8 34 34 H 1.08999 * 117.50123 * 359.97438 * 16 7 6 35 35 H 1.08999 * 117.49634 * 145.02358 * 16 7 6 36 36 H 1.08997 * 117.49853 * 214.97746 * 17 7 6 37 37 H 1.09000 * 117.50104 * 0.02562 * 17 7 6 38 38 H 1.08012 * 120.05817 * 0.15238 * 20 19 18 39 39 H 1.07999 * 119.87251 * 180.02562 * 21 20 19 40 40 H 1.07996 * 119.90339 * 179.97438 * 22 21 20 41 41 H 1.08010 * 120.08943 * 179.73228 * 23 22 21 42 42 H 0.97000 * 120.51150 * 15.76792 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0316 1.4211 0.0000 4 8 2.3192 1.9603 -1.0424 5 8 2.1588 2.0880 1.1579 6 6 2.5385 3.4871 1.0747 7 6 2.7492 4.0431 2.4844 8 6 1.5043 4.5175 3.1888 9 1 1.1580 4.0074 4.0755 10 6 0.8074 5.6027 2.7011 11 7 1.3020 6.3098 1.7088 12 14 -0.8392 6.0685 3.4502 13 1 -0.6397 6.4931 4.8592 14 1 -1.4366 7.1863 2.6763 15 1 -1.7503 4.8966 3.4107 16 6 4.0488 4.8030 2.7571 17 6 3.8444 3.4030 3.3398 18 8 2.0062 -0.6721 1.1689 19 6 3.3231 -1.0102 1.1860 20 6 4.0349 -1.0175 2.3729 21 6 5.3745 -1.3615 2.3708 22 6 6.0058 -1.6977 1.1873 23 6 5.3026 -1.6874 -0.0033 24 6 3.9593 -1.3500 -0.0069 25 7 3.2261 -1.3396 -1.2020 26 6 2.0321 -0.7085 -1.2320 27 8 1.3664 -0.7127 -2.2459 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5127 0.8906 30 1 -0.3633 0.5148 -0.8894 31 1 3.4635 3.5792 0.5057 32 1 1.7481 4.0489 0.5769 33 1 0.8485 7.1149 1.4137 34 1 4.7539 4.9064 1.9323 35 1 4.0036 5.6464 3.4460 36 1 3.6648 3.3255 4.4121 37 1 4.4151 2.5861 2.8981 38 1 3.5450 -0.7554 3.2991 39 1 5.9297 -1.3676 3.2971 40 1 7.0521 -1.9650 1.1922 41 1 5.7984 -1.9461 -0.9273 42 1 3.5712 -1.7785 -1.9953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869585864.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:30 Heat of formation + Delta-G solvation = -89.831639 kcal Electronic energy + Delta-G solvation = -29410.715391 eV Core-core repulsion = 25322.696471 eV Total energy + Delta-G solvation = -4088.018920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.04011 -39.81364 -39.02637 -37.72568 -36.87983 -35.38214 -35.35703 -32.55773 -32.09510 -30.44472 -29.13903 -27.16283 -25.69360 -25.22289 -23.61316 -23.03427 -22.14504 -21.19509 -19.45971 -19.32399 -19.18131 -18.10181 -17.51979 -16.83319 -16.37474 -16.16632 -15.92799 -15.54128 -14.93697 -14.92022 -14.62655 -14.50217 -14.06949 -13.88922 -13.73485 -13.34113 -13.06580 -12.68018 -12.55590 -12.31214 -12.17136 -12.03468 -11.83708 -11.62767 -11.39180 -10.99628 -10.97821 -10.96997 -10.60295 -10.44546 -10.33852 -10.14437 -10.00296 -9.56461 -8.93399 -8.86696 -8.62277 -8.28626 -8.15284 -6.12629 -4.18206 0.85799 1.06653 1.88771 2.21500 2.46615 2.91373 3.13383 3.27085 3.32940 3.35390 3.57274 3.73634 4.33995 4.37303 4.48457 4.74142 4.77169 5.01730 5.08722 5.12029 5.21114 5.40118 5.48072 5.53641 5.62684 5.80418 5.89571 5.91481 5.98689 6.17625 6.24398 6.27228 6.31843 6.43477 6.47164 6.54292 6.57203 6.65435 6.94465 7.03378 7.08683 7.28162 7.35313 7.54028 7.81308 8.06917 8.30892 8.81854 9.46454 10.95701 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013835 B = 0.004429 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.408966 B = 6320.743386 C = 7368.221604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.120 3.880 3 C 0.442 3.558 4 O -0.497 6.497 5 O -0.320 6.320 6 C 0.112 3.888 7 C 0.044 3.956 8 C -0.492 4.492 9 H 0.065 0.935 10 C 0.069 3.931 11 N -0.882 5.882 12 Si 0.893 3.107 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.273 1.273 16 C -0.162 4.162 17 C -0.194 4.194 18 O -0.274 6.274 19 C 0.075 3.925 20 C -0.092 4.092 21 C -0.110 4.110 22 C -0.110 4.110 23 C -0.125 4.125 24 C 0.089 3.911 25 N -0.656 5.656 26 C 0.519 3.481 27 O -0.485 6.485 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.264 0.736 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.146 0.854 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.913 -17.121 -0.995 18.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.077 3.923 3 C 0.282 3.718 4 O -0.386 6.386 5 O -0.235 6.235 6 C 0.040 3.960 7 C 0.043 3.957 8 C -0.530 4.530 9 H 0.083 0.917 10 C -0.135 4.135 11 N -0.519 5.519 12 Si 0.721 3.279 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.200 4.200 17 C -0.232 4.232 18 O -0.188 6.188 19 C 0.028 3.972 20 C -0.111 4.111 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.146 4.146 24 C -0.007 4.007 25 N -0.303 5.303 26 C 0.303 3.697 27 O -0.357 6.357 28 H 0.106 0.894 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.163 0.837 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 6.290 -16.704 -1.775 17.938 hybrid contribution -0.418 0.426 -0.394 0.715 sum 5.872 -16.279 -2.169 17.441 Atomic orbital electron populations 1.21825 0.85774 1.05433 1.05948 1.21967 0.99655 0.87126 0.83600 1.23341 0.75980 0.88691 0.83810 1.90711 1.45201 1.69312 1.33354 1.86576 1.77609 1.28118 1.31154 1.23116 0.99394 0.73785 0.99734 1.18761 0.89875 0.97182 0.89883 1.20424 1.07215 1.13994 1.11319 0.91736 1.25028 0.97722 0.96104 0.94624 1.69936 1.39591 1.15451 1.26888 0.86624 0.83977 0.78146 0.79180 1.20158 1.21197 1.19845 1.22771 1.01015 0.94160 1.02063 1.22808 1.05764 0.95366 0.99222 1.86393 1.21577 1.72576 1.38298 1.18698 0.83802 1.01573 0.93085 1.20665 0.93424 1.00077 0.96885 1.21053 0.93633 0.99408 0.98772 1.20989 1.00096 1.00136 0.91661 1.20605 0.90840 1.03514 0.99630 1.18141 0.92939 1.04504 0.85099 1.43616 1.19472 1.54405 1.12804 1.20500 0.80955 0.78743 0.89496 1.90782 1.55163 1.57803 1.31924 0.89428 0.88354 0.88276 0.93932 0.89446 0.92601 0.91694 0.89503 0.90035 0.91319 0.83659 0.84622 0.85008 0.84964 0.74181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.40 37.16 0.31 -1.57 16 2 C 0.12 2.01 1.06 -92.91 -0.10 1.91 16 3 C 0.44 9.05 6.42 36.01 0.23 9.28 16 4 O -0.50 -11.34 15.92 -18.75 -0.30 -11.64 16 5 O -0.32 -7.07 9.91 -44.44 -0.44 -7.51 16 6 C 0.11 2.71 5.38 37.16 0.20 2.91 16 7 C 0.04 1.07 1.55 -155.66 -0.24 0.82 16 8 C -0.49 -13.11 8.82 -34.44 -0.30 -13.41 16 9 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 10 C 0.07 1.84 5.23 -17.82 -0.09 1.75 16 11 N -0.88 -24.56 12.58 55.43 0.70 -23.87 16 12 Si 0.89 20.68 29.55 -169.99 -5.02 15.65 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 14 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 C -0.16 -3.67 9.88 -26.73 -0.26 -3.93 16 17 C -0.19 -4.10 9.89 -26.72 -0.26 -4.36 16 18 O -0.27 -4.31 9.61 -33.61 -0.32 -4.64 16 19 C 0.07 1.07 6.06 -39.09 -0.24 0.83 16 20 C -0.09 -1.11 10.00 -39.50 -0.39 -1.50 16 21 C -0.11 -1.05 10.04 -39.54 -0.40 -1.45 16 22 C -0.11 -0.97 10.04 -39.55 -0.40 -1.37 16 23 C -0.13 -1.25 9.95 -39.47 -0.39 -1.64 16 24 C 0.09 1.14 6.54 -83.49 -0.55 0.59 16 25 N -0.66 -8.63 5.47 -9.68 -0.05 -8.68 16 26 C 0.52 8.42 6.28 -10.83 -0.07 8.35 16 27 O -0.49 -8.69 17.01 5.54 0.09 -8.60 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.10 1.42 7.86 -51.93 -0.41 1.02 16 31 H 0.04 1.01 7.74 -51.93 -0.40 0.61 16 32 H 0.09 2.34 7.25 -51.93 -0.38 1.96 16 33 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 34 H 0.06 1.39 8.06 -51.93 -0.42 0.97 16 35 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 36 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 39 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 41 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.42 4.27 8.89 -40.82 -0.36 3.91 16 LS Contribution 365.79 15.07 5.51 5.51 Total: -1.00 -32.03 365.79 -8.11 -40.14 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.32 Total: 6.41 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -2.96 Total: -2.79 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.64 Total: -32.55 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.97 Total: -32.39 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.03 -8.11 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869585864.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.689 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds