Wall clock time and date at job start Tue Mar 31 2020 16:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50705 * 109.43957 * 2 1 4 4 O 1.20831 * 119.99816 * 264.96792 * 3 2 1 5 5 O 1.34230 * 120.00317 * 84.96771 * 3 2 1 6 6 C 1.45200 * 117.00148 * 185.07897 * 5 3 2 7 7 C 1.52996 * 109.47168 * 184.77953 * 6 5 3 8 8 C 1.50702 * 115.55242 * 275.61666 * 7 6 5 9 9 H 1.07991 * 120.00307 * 114.58009 * 8 7 6 10 10 C 1.37880 * 119.99313 * 294.58707 * 8 7 6 11 11 N 1.31504 * 120.00425 * 352.81510 * 10 8 7 12 12 Si 1.86800 * 119.99492 * 172.82011 * 10 8 7 13 13 H 1.48497 * 109.47529 * 64.99755 * 12 10 8 14 14 H 1.48501 * 109.47111 * 184.99596 * 12 10 8 15 15 H 1.48500 * 109.47297 * 304.99288 * 12 10 8 16 16 C 1.53001 * 117.49798 * 129.90492 * 7 6 5 17 17 C 1.53004 * 117.49660 * 61.27943 * 7 6 5 18 18 O 1.42997 * 109.44887 * 119.89685 * 2 1 3 19 19 C 1.35976 * 116.71891 * 166.44743 * 18 2 1 20 20 C 1.38396 * 120.67783 * 147.15063 * 19 18 2 21 21 C 1.38306 * 119.88109 * 180.13014 * 20 19 18 22 22 C 1.38285 * 120.25861 * 0.02562 * 21 20 19 23 23 C 1.38280 * 120.19340 * 0.23730 * 22 21 20 24 24 C 1.38503 * 119.81895 * 359.45962 * 23 22 21 25 25 N 1.40214 * 120.73749 * 180.31259 * 24 23 22 26 26 C 1.35088 * 118.97952 * 195.79736 * 25 24 23 27 27 O 1.21296 * 120.13572 * 181.69020 * 26 25 24 28 28 H 1.08999 * 109.46785 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47150 * 299.92771 * 1 2 3 30 30 H 1.08997 * 109.47249 * 59.93709 * 1 2 3 31 31 H 1.08996 * 109.47004 * 304.78072 * 6 5 3 32 32 H 1.09002 * 109.46958 * 64.78183 * 6 5 3 33 33 H 0.97001 * 120.00319 * 185.01605 * 11 10 8 34 34 H 1.08999 * 117.50123 * 359.97438 * 16 7 6 35 35 H 1.08999 * 117.49634 * 145.02358 * 16 7 6 36 36 H 1.08997 * 117.49853 * 214.97746 * 17 7 6 37 37 H 1.09000 * 117.50104 * 0.02562 * 17 7 6 38 38 H 1.08012 * 120.05817 * 0.15238 * 20 19 18 39 39 H 1.07999 * 119.87251 * 180.02562 * 21 20 19 40 40 H 1.07996 * 119.90339 * 179.97438 * 22 21 20 41 41 H 1.08010 * 120.08943 * 179.73228 * 23 22 21 42 42 H 0.97000 * 120.51150 * 15.76792 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0316 1.4211 0.0000 4 8 2.3192 1.9603 -1.0424 5 8 2.1588 2.0880 1.1579 6 6 2.5385 3.4871 1.0747 7 6 2.7492 4.0431 2.4844 8 6 1.5043 4.5175 3.1888 9 1 1.1580 4.0074 4.0755 10 6 0.8074 5.6027 2.7011 11 7 1.3020 6.3098 1.7088 12 14 -0.8392 6.0685 3.4502 13 1 -0.6397 6.4931 4.8592 14 1 -1.4366 7.1863 2.6763 15 1 -1.7503 4.8966 3.4107 16 6 4.0488 4.8030 2.7571 17 6 3.8444 3.4030 3.3398 18 8 2.0062 -0.6721 1.1689 19 6 3.3231 -1.0102 1.1860 20 6 4.0349 -1.0175 2.3729 21 6 5.3745 -1.3615 2.3708 22 6 6.0058 -1.6977 1.1873 23 6 5.3026 -1.6874 -0.0033 24 6 3.9593 -1.3500 -0.0069 25 7 3.2261 -1.3396 -1.2020 26 6 2.0321 -0.7085 -1.2320 27 8 1.3664 -0.7127 -2.2459 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5127 0.8906 30 1 -0.3633 0.5148 -0.8894 31 1 3.4635 3.5792 0.5057 32 1 1.7481 4.0489 0.5769 33 1 0.8485 7.1149 1.4137 34 1 4.7539 4.9064 1.9323 35 1 4.0036 5.6464 3.4460 36 1 3.6648 3.3255 4.4121 37 1 4.4151 2.5861 2.8981 38 1 3.5450 -0.7554 3.2991 39 1 5.9297 -1.3676 3.2971 40 1 7.0521 -1.9650 1.1922 41 1 5.7984 -1.9461 -0.9273 42 1 3.5712 -1.7785 -1.9953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869585864.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:29 Heat of formation + Delta-G solvation = -108.794198 kcal Electronic energy + Delta-G solvation = -29411.537669 eV Core-core repulsion = 25322.696471 eV Total energy + Delta-G solvation = -4088.841199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.24060 -41.33504 -40.18152 -38.88208 -38.58212 -37.14656 -36.39586 -34.12278 -33.73186 -31.32333 -30.06040 -28.96493 -27.48112 -26.70665 -24.74075 -23.97940 -23.47264 -22.92589 -21.22953 -20.64353 -20.41832 -19.20539 -18.80824 -18.57133 -17.89474 -17.69892 -17.27429 -16.64563 -16.54839 -16.29108 -15.92161 -15.64961 -15.54372 -15.34622 -14.90117 -14.50919 -14.38103 -14.11991 -13.96261 -13.66965 -13.50242 -13.46671 -13.30408 -12.95140 -12.81929 -12.78520 -12.43147 -12.26437 -12.11455 -11.97961 -11.90166 -11.85414 -11.56110 -11.30401 -10.88121 -10.55725 -10.15720 -9.73404 -9.12559 -8.16239 -6.27351 -0.11398 0.21685 0.63044 0.66747 1.34572 1.42197 1.44931 1.51830 1.64723 1.90569 2.40606 2.55359 2.73149 3.07792 3.12286 3.30082 3.48835 3.60378 4.01488 4.02889 4.22425 4.30709 4.31778 4.37812 4.41619 4.42720 4.51437 4.62423 4.70104 4.76166 4.83162 4.94322 4.98727 5.14215 5.14457 5.27070 5.33407 5.44085 5.49273 5.54782 5.56147 5.61888 5.74211 6.06403 6.31101 6.38730 6.45312 6.76797 7.40308 8.91679 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013835 B = 0.004429 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.408966 B = 6320.743386 C = 7368.221604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.122 3.878 3 C 0.441 3.559 4 O -0.527 6.527 5 O -0.323 6.323 6 C 0.127 3.873 7 C 0.008 3.992 8 C -0.505 4.505 9 H 0.061 0.939 10 C 0.024 3.976 11 N -0.912 5.912 12 Si 0.951 3.049 13 H -0.266 1.266 14 H -0.287 1.287 15 H -0.270 1.270 16 C -0.162 4.162 17 C -0.163 4.163 18 O -0.279 6.279 19 C 0.035 3.965 20 C -0.106 4.106 21 C -0.103 4.103 22 C -0.100 4.100 23 C -0.120 4.120 24 C 0.064 3.936 25 N -0.642 5.642 26 C 0.514 3.486 27 O -0.512 6.512 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.040 0.960 32 H 0.051 0.949 33 H 0.263 0.737 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.146 0.854 39 H 0.167 0.833 40 H 0.171 0.829 41 H 0.161 0.839 42 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.697 -19.016 0.182 20.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.079 3.921 3 C 0.283 3.717 4 O -0.418 6.418 5 O -0.237 6.237 6 C 0.054 3.946 7 C 0.007 3.993 8 C -0.543 4.543 9 H 0.079 0.921 10 C -0.177 4.177 11 N -0.549 5.549 12 Si 0.776 3.224 13 H -0.191 1.191 14 H -0.212 1.212 15 H -0.195 1.195 16 C -0.200 4.200 17 C -0.200 4.200 18 O -0.194 6.194 19 C -0.011 4.011 20 C -0.125 4.125 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.140 4.140 24 C -0.031 4.031 25 N -0.290 5.290 26 C 0.299 3.701 27 O -0.386 6.386 28 H 0.133 0.867 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.164 0.836 39 H 0.184 0.816 40 H 0.188 0.812 41 H 0.179 0.821 42 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 8.115 -18.636 -0.567 20.334 hybrid contribution -0.801 0.919 -0.707 1.409 sum 7.313 -17.717 -1.273 19.210 Atomic orbital electron populations 1.21907 0.84379 1.07145 1.05621 1.21973 1.00717 0.84638 0.84817 1.24219 0.74742 0.90021 0.82764 1.90680 1.46510 1.70431 1.34130 1.86585 1.77859 1.27089 1.32209 1.22694 0.97810 0.74713 0.99387 1.18836 0.90279 0.99616 0.90547 1.20701 1.08307 1.13942 1.11331 0.92086 1.25729 1.00657 0.96195 0.95085 1.70048 1.40893 1.15815 1.28162 0.85710 0.80155 0.77771 0.78746 1.19139 1.21230 1.19465 1.22729 1.00067 0.94862 1.02325 1.22820 1.03003 0.94807 0.99341 1.86388 1.23030 1.72378 1.37617 1.19153 0.83546 1.03720 0.94637 1.20917 0.94631 1.00684 0.96260 1.21491 0.92538 0.97516 1.00550 1.21501 1.01705 0.97989 0.90665 1.21054 0.89555 1.01850 1.01559 1.18419 0.94166 1.06140 0.84338 1.43484 1.18411 1.53422 1.13698 1.20424 0.81803 0.79078 0.88842 1.90761 1.56189 1.59277 1.32422 0.86708 0.88306 0.88938 0.94187 0.93011 0.92825 0.90787 0.90501 0.88996 0.89369 0.83637 0.81555 0.81196 0.82106 0.72636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 8.40 71.98 0.60 -3.25 16 2 C 0.12 4.16 1.06 -12.28 -0.01 4.15 16 3 C 0.44 18.53 6.42 71.24 0.46 18.99 16 4 O -0.53 -24.94 15.92 21.95 0.35 -24.59 16 5 O -0.32 -14.58 9.91 -46.46 -0.46 -15.04 16 6 C 0.13 6.31 5.38 71.98 0.39 6.70 16 7 C 0.01 0.38 1.55 -52.93 -0.08 0.30 16 8 C -0.51 -27.15 8.82 25.60 0.23 -26.92 16 9 H 0.06 3.23 7.82 -2.92 -0.02 3.20 16 10 C 0.02 1.29 5.23 84.66 0.44 1.73 16 11 N -0.91 -51.94 12.58 21.45 0.27 -51.67 16 12 Si 0.95 42.73 29.55 68.60 2.03 44.76 16 13 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 14 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 16 C -0.16 -7.25 9.88 30.60 0.30 -6.95 16 17 C -0.16 -6.60 9.89 30.60 0.30 -6.30 16 18 O -0.28 -8.80 9.61 -79.95 -0.77 -9.57 16 19 C 0.03 0.96 6.06 22.59 0.14 1.10 16 20 C -0.11 -2.37 10.00 22.32 0.22 -2.15 16 21 C -0.10 -1.57 10.04 22.30 0.22 -1.35 16 22 C -0.10 -1.32 10.04 22.29 0.22 -1.09 16 23 C -0.12 -1.98 9.95 22.34 0.22 -1.76 16 24 C 0.06 1.55 6.54 38.14 0.25 1.80 16 25 N -0.64 -16.39 5.47 -302.73 -1.66 -18.05 16 26 C 0.51 16.79 6.28 87.62 0.55 17.34 16 27 O -0.51 -18.65 17.01 -3.08 -0.05 -18.70 16 28 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.09 2.76 7.86 -2.39 -0.02 2.74 16 31 H 0.04 1.95 7.74 -2.39 -0.02 1.93 16 32 H 0.05 2.91 7.25 -2.39 -0.02 2.89 16 33 H 0.26 14.37 8.32 -92.71 -0.77 13.60 16 34 H 0.07 3.13 8.06 -2.39 -0.02 3.11 16 35 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 36 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 37 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.15 3.11 8.06 -2.90 -0.02 3.09 16 39 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 40 H 0.17 0.99 8.06 -2.91 -0.02 0.96 16 41 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 42 H 0.43 8.30 8.89 -92.71 -0.82 7.48 16 Total: -1.00 -71.20 365.79 4.40 -66.80 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.24 Total: 23.72 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 4.46 Total: 2.33 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -1.39 Total: -69.72 kcal Atomic # 8 Polarization: -66.97 SS G_CDS: -0.93 Total: -67.90 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -71.20 4.40 -66.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869585864.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.996 kcal (2) G-P(sol) polarization free energy of solvation -71.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds