Wall clock time and date at job start Tue Mar 31 2020 18:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.46999 * 2 1 4 4 C 1.42905 * 113.99967 * 179.97438 * 3 2 1 5 5 C 1.53890 * 113.58963 * 249.21783 * 4 3 2 6 6 C 1.53426 * 86.82286 * 220.45626 * 5 4 3 7 7 C 1.52460 * 128.51517 * 245.01433 * 6 5 4 8 8 C 1.52460 * 128.60255 * 165.10215 * 6 5 4 9 9 H 1.08996 * 117.51422 * 10.06014 * 8 6 5 10 10 C 1.50703 * 117.51186 * 224.95777 * 8 6 5 11 11 O 1.21289 * 119.99820 * 359.97438 * 10 8 6 12 12 N 1.34767 * 120.00434 * 180.02562 * 10 8 6 13 13 S 1.65599 * 120.00360 * 179.97438 * 12 10 8 14 14 O 1.42102 * 104.27723 * 181.07396 * 13 12 10 15 15 O 1.42104 * 104.27704 * 308.92839 * 13 12 10 16 16 C 1.81394 * 104.44924 * 65.00041 * 13 12 10 17 17 C 1.52998 * 109.47083 * 180.02562 * 16 13 12 18 18 C 1.50708 * 109.47136 * 180.02562 * 17 16 13 19 19 H 1.08004 * 119.99627 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00068 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99903 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99997 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47258 * 89.99989 * 22 20 18 24 24 H 1.48500 * 109.47145 * 210.00197 * 22 20 18 25 25 H 1.48504 * 109.47147 * 330.00184 * 22 20 18 26 26 C 1.53255 * 87.72193 * 25.01945 * 6 5 4 27 27 H 1.09007 * 109.46660 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47259 * 299.99816 * 1 2 3 29 29 H 1.08998 * 109.47204 * 60.00101 * 1 2 3 30 30 H 1.09000 * 109.47259 * 240.00184 * 2 1 3 31 31 H 1.09000 * 109.47203 * 120.00447 * 2 1 3 32 32 H 1.08995 * 112.82759 * 20.33606 * 4 3 2 33 33 H 1.09000 * 113.64515 * 334.92891 * 5 4 3 34 34 H 1.08997 * 113.64226 * 105.93134 * 5 4 3 35 35 H 1.09000 * 117.51800 * 349.80380 * 7 6 5 36 36 H 1.09001 * 117.51030 * 134.91017 * 7 6 5 37 37 H 0.97003 * 120.00054 * 0.02562 * 12 10 8 38 38 H 1.09000 * 109.47556 * 299.99897 * 16 13 12 39 39 H 1.09003 * 109.47293 * 60.00412 * 16 13 12 40 40 H 1.08999 * 109.47573 * 299.99810 * 17 16 13 41 41 H 1.08994 * 109.47227 * 60.00462 * 17 16 13 42 42 H 0.96996 * 120.00132 * 180.02562 * 21 20 18 43 43 H 1.09002 * 113.64232 * 220.49082 * 26 6 5 44 44 H 1.09003 * 113.73024 * 89.49223 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 4.0047 2.0078 1.3193 6 6 4.9779 2.8232 0.4579 7 6 6.4956 2.7069 0.3715 8 6 5.8508 4.0041 0.8677 9 1 5.9265 4.2291 1.9315 10 6 5.8866 5.1961 -0.0536 11 8 5.2362 5.1910 -1.0774 12 7 6.6419 6.2674 0.2594 13 16 6.6817 7.5770 -0.7533 14 8 7.5822 8.4789 -0.1247 15 8 6.9707 7.0241 -2.0300 16 6 4.9910 8.2329 -0.7116 17 6 4.8978 9.4606 -1.6199 18 6 3.4932 10.0060 -1.5848 19 1 2.7422 9.5247 -0.9758 20 6 3.1671 11.1192 -2.3300 21 7 4.0816 11.7049 -3.0719 22 14 1.4261 11.7947 -2.2870 23 1 1.3107 12.7969 -1.1973 24 1 1.1130 12.4393 -3.5876 25 1 0.4704 10.6848 -2.0419 26 6 3.9472 2.7436 -0.6734 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.9270 0.5544 -0.3482 33 1 3.3000 2.6203 1.8817 34 1 4.4920 1.2495 1.9322 35 1 6.9954 2.0788 1.1089 36 1 6.9456 2.7159 -0.6213 37 1 7.1630 6.2711 1.0776 38 1 4.2962 7.4693 -1.0611 39 1 4.7362 8.5160 0.3097 40 1 5.5925 10.2245 -1.2709 41 1 5.1524 9.1772 -2.6411 42 1 3.8523 12.4883 -3.5959 43 1 4.3884 2.5744 -1.6557 44 1 3.2259 3.5608 -0.6680 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870269331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:36 Heat of formation + Delta-G solvation = -115.272393 kcal Electronic energy + Delta-G solvation = -26308.349481 eV Core-core repulsion = 22354.671318 eV Total energy + Delta-G solvation = -3953.678163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.83534 -39.25562 -37.28002 -36.65530 -35.59944 -34.41642 -33.87393 -33.51489 -31.16430 -30.91149 -26.05020 -25.64544 -25.07473 -23.22637 -22.82782 -21.68069 -21.05748 -19.42497 -18.72461 -17.80443 -17.56704 -17.11175 -16.48231 -15.93967 -15.87556 -15.63135 -15.19249 -14.96639 -14.68385 -14.52683 -14.28893 -13.86796 -13.41825 -13.14865 -13.00514 -12.57014 -12.51497 -12.33737 -12.33144 -12.09047 -11.78459 -11.71008 -11.62023 -11.60144 -11.35438 -11.06541 -10.98316 -10.90150 -10.82645 -10.63826 -10.40419 -10.33873 -10.25164 -9.95334 -9.68085 -9.64474 -9.15968 -8.48001 -6.10337 -4.15645 0.51824 1.98988 2.70179 3.25940 3.28746 3.34854 3.38619 3.54945 3.81249 4.09095 4.25988 4.36006 4.37745 4.39519 4.53839 4.59518 4.67659 4.74458 4.79854 4.99301 5.00842 5.05995 5.21504 5.25059 5.31127 5.33257 5.44367 5.57655 5.60530 5.61360 5.64771 5.74911 5.81139 5.85500 5.99207 6.06743 6.48116 6.67404 7.04739 7.30258 7.36941 7.50898 7.82961 8.18785 8.87388 9.48881 11.00845 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.010314 B = 0.003158 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.032725 B = 8863.094339 C =11153.080669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.372 6.372 4 C 0.063 3.937 5 C -0.112 4.112 6 C -0.127 4.127 7 C -0.118 4.118 8 C -0.176 4.176 9 H 0.133 0.867 10 C 0.562 3.438 11 O -0.483 6.483 12 N -1.056 6.056 13 S 2.567 3.433 14 O -0.955 6.955 15 O -0.939 6.939 16 C -0.575 4.575 17 C 0.030 3.970 18 C -0.519 4.519 19 H 0.062 0.938 20 C 0.058 3.942 21 N -0.891 5.891 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.272 1.272 26 C -0.081 4.081 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.428 0.572 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.034 0.966 41 H 0.036 0.964 42 H 0.265 0.735 43 H 0.079 0.921 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.173 -24.754 11.939 27.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.291 6.291 4 C 0.006 3.994 5 C -0.149 4.149 6 C -0.128 4.128 7 C -0.155 4.155 8 C -0.199 4.199 9 H 0.151 0.849 10 C 0.348 3.652 11 O -0.354 6.354 12 N -0.816 5.816 13 S 2.667 3.333 14 O -0.946 6.946 15 O -0.929 6.929 16 C -0.710 4.710 17 C -0.009 4.009 18 C -0.558 4.558 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.529 5.529 22 Si 0.728 3.272 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.119 4.119 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.263 0.737 38 H 0.150 0.850 39 H 0.139 0.861 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.401 -24.217 10.573 26.461 hybrid contribution -0.900 0.306 0.848 1.274 sum 0.501 -23.911 11.421 26.503 Atomic orbital electron populations 1.21757 0.93827 1.02119 1.03331 1.22498 0.95643 0.84113 0.99822 1.87995 1.20534 1.26072 1.94543 1.23590 0.80974 0.98298 0.96584 1.23111 0.96636 0.98390 0.96771 1.21934 0.91824 0.98202 1.00876 1.22901 0.93443 0.95700 1.03488 1.22218 1.09063 0.88578 1.00072 0.84883 1.19593 0.77062 0.82961 0.85581 1.90910 1.39959 1.80206 1.24287 1.55377 1.54176 1.32339 1.39740 1.06675 0.79550 0.73185 0.73910 1.93588 1.62238 1.62552 1.76222 1.93593 1.83969 1.76170 1.39147 1.30334 1.18277 1.11876 1.10492 1.18986 1.00135 0.88382 0.93438 1.20987 0.94525 1.12221 1.28082 0.91954 1.25064 0.97794 0.96596 0.95022 1.69954 1.33537 1.21058 1.28366 0.86446 0.84060 0.79133 0.77528 1.20474 1.20981 1.19682 1.22672 0.95576 0.96942 0.96677 0.91262 0.91834 0.91701 0.93425 0.93559 0.89431 0.88448 0.90917 0.87085 0.87433 0.73681 0.85050 0.86088 0.94792 0.94586 0.92520 0.90242 0.87917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.16 0.38 -0.67 16 2 C 0.06 0.43 6.50 37.16 0.24 0.67 16 3 O -0.37 -3.95 10.35 -35.23 -0.36 -4.31 16 4 C 0.06 0.57 4.29 -25.80 -0.11 0.46 16 5 C -0.11 -0.88 7.94 -26.05 -0.21 -1.09 16 6 C -0.13 -1.17 2.88 -154.71 -0.45 -1.62 16 7 C -0.12 -0.90 10.24 -26.94 -0.28 -1.18 16 8 C -0.18 -1.62 6.19 -91.98 -0.57 -2.19 16 9 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 10 C 0.56 7.54 7.35 -10.99 -0.08 7.46 16 11 O -0.48 -8.34 13.24 -11.59 -0.15 -8.50 16 12 N -1.06 -13.49 5.60 31.22 0.17 -13.32 16 13 S 2.57 47.01 5.11 -107.50 -0.55 46.47 16 14 O -0.96 -19.07 18.08 -57.54 -1.04 -20.11 16 15 O -0.94 -20.67 17.04 -64.79 -1.10 -21.77 16 16 C -0.58 -11.60 5.82 37.16 0.22 -11.38 16 17 C 0.03 0.78 4.98 -27.88 -0.14 0.64 16 18 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 19 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 22 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 C -0.08 -0.91 6.30 -26.13 -0.16 -1.08 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.64 7.88 -51.93 -0.41 0.23 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.43 3.65 8.79 -34.47 -0.30 3.35 16 38 H 0.13 2.62 7.19 -51.92 -0.37 2.24 16 39 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 40 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.10 1.37 8.05 -51.93 -0.42 0.95 16 LS Contribution 382.87 15.07 5.77 5.77 Total: -1.00 -37.41 382.87 -10.08 -47.49 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.96 Total: 1.23 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -1.56 Total: -23.40 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.91 Total: -39.46 kcal Atomic # 8 Polarization: -52.03 SS G_CDS: -2.66 Total: -54.70 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 47.01 SS G_CDS: -0.55 Total: 46.47 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.41 -10.08 -47.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870269331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.783 kcal (2) G-P(sol) polarization free energy of solvation -37.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds