Wall clock time and date at job start Tue Mar 31 2020 18:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.46999 * 2 1 4 4 C 1.42905 * 113.99967 * 179.97438 * 3 2 1 5 5 C 1.53890 * 113.58963 * 249.21783 * 4 3 2 6 6 C 1.53426 * 86.82286 * 220.45626 * 5 4 3 7 7 C 1.52460 * 128.51517 * 245.01433 * 6 5 4 8 8 C 1.52460 * 128.60255 * 165.10215 * 6 5 4 9 9 H 1.08996 * 117.51422 * 10.06014 * 8 6 5 10 10 C 1.50703 * 117.51186 * 224.95777 * 8 6 5 11 11 O 1.21289 * 119.99820 * 359.97438 * 10 8 6 12 12 N 1.34767 * 120.00434 * 180.02562 * 10 8 6 13 13 S 1.65599 * 120.00360 * 179.97438 * 12 10 8 14 14 O 1.42102 * 104.27723 * 181.07396 * 13 12 10 15 15 O 1.42104 * 104.27704 * 308.92839 * 13 12 10 16 16 C 1.81394 * 104.44924 * 65.00041 * 13 12 10 17 17 C 1.52998 * 109.47083 * 180.02562 * 16 13 12 18 18 C 1.50708 * 109.47136 * 180.02562 * 17 16 13 19 19 H 1.08004 * 119.99627 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00068 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99903 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99997 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47258 * 89.99989 * 22 20 18 24 24 H 1.48500 * 109.47145 * 210.00197 * 22 20 18 25 25 H 1.48504 * 109.47147 * 330.00184 * 22 20 18 26 26 C 1.53255 * 87.72193 * 25.01945 * 6 5 4 27 27 H 1.09007 * 109.46660 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47259 * 299.99816 * 1 2 3 29 29 H 1.08998 * 109.47204 * 60.00101 * 1 2 3 30 30 H 1.09000 * 109.47259 * 240.00184 * 2 1 3 31 31 H 1.09000 * 109.47203 * 120.00447 * 2 1 3 32 32 H 1.08995 * 112.82759 * 20.33606 * 4 3 2 33 33 H 1.09000 * 113.64515 * 334.92891 * 5 4 3 34 34 H 1.08997 * 113.64226 * 105.93134 * 5 4 3 35 35 H 1.09000 * 117.51800 * 349.80380 * 7 6 5 36 36 H 1.09001 * 117.51030 * 134.91017 * 7 6 5 37 37 H 0.97003 * 120.00054 * 0.02562 * 12 10 8 38 38 H 1.09000 * 109.47556 * 299.99897 * 16 13 12 39 39 H 1.09003 * 109.47293 * 60.00412 * 16 13 12 40 40 H 1.08999 * 109.47573 * 299.99810 * 17 16 13 41 41 H 1.08994 * 109.47227 * 60.00462 * 17 16 13 42 42 H 0.96996 * 120.00132 * 180.02562 * 21 20 18 43 43 H 1.09002 * 113.64232 * 220.49082 * 26 6 5 44 44 H 1.09003 * 113.73024 * 89.49223 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 4.0047 2.0078 1.3193 6 6 4.9779 2.8232 0.4579 7 6 6.4956 2.7069 0.3715 8 6 5.8508 4.0041 0.8677 9 1 5.9265 4.2291 1.9315 10 6 5.8866 5.1961 -0.0536 11 8 5.2362 5.1910 -1.0774 12 7 6.6419 6.2674 0.2594 13 16 6.6817 7.5770 -0.7533 14 8 7.5822 8.4789 -0.1247 15 8 6.9707 7.0241 -2.0300 16 6 4.9910 8.2329 -0.7116 17 6 4.8978 9.4606 -1.6199 18 6 3.4932 10.0060 -1.5848 19 1 2.7422 9.5247 -0.9758 20 6 3.1671 11.1192 -2.3300 21 7 4.0816 11.7049 -3.0719 22 14 1.4261 11.7947 -2.2870 23 1 1.3107 12.7969 -1.1973 24 1 1.1130 12.4393 -3.5876 25 1 0.4704 10.6848 -2.0419 26 6 3.9472 2.7436 -0.6734 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.9270 0.5544 -0.3482 33 1 3.3000 2.6203 1.8817 34 1 4.4920 1.2495 1.9322 35 1 6.9954 2.0788 1.1089 36 1 6.9456 2.7159 -0.6213 37 1 7.1630 6.2711 1.0776 38 1 4.2962 7.4693 -1.0611 39 1 4.7362 8.5160 0.3097 40 1 5.5925 10.2245 -1.2709 41 1 5.1524 9.1772 -2.6411 42 1 3.8523 12.4883 -3.5959 43 1 4.3884 2.5744 -1.6557 44 1 3.2259 3.5608 -0.6680 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870269331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:35 Heat of formation + Delta-G solvation = -143.182165 kcal Electronic energy + Delta-G solvation = -26309.559740 eV Core-core repulsion = 22354.671318 eV Total energy + Delta-G solvation = -3954.888421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.75652 -40.15316 -38.34170 -37.94084 -37.24455 -35.98380 -35.59547 -34.21044 -33.20431 -31.51520 -27.68832 -26.77510 -26.03962 -23.81889 -23.67602 -23.45224 -22.03633 -20.76679 -19.67872 -19.17759 -18.71025 -18.36967 -17.79394 -17.35470 -16.78209 -16.59806 -16.54312 -16.39095 -16.14203 -15.76534 -15.23460 -14.97786 -14.59619 -14.51346 -13.88268 -13.79972 -13.77072 -13.72753 -13.39222 -13.27770 -13.14441 -12.97207 -12.95896 -12.87225 -12.74859 -12.33554 -12.26790 -12.22225 -12.03465 -11.96491 -11.77559 -11.61933 -11.31685 -11.24424 -11.09153 -10.70594 -10.67751 -10.31397 -8.29842 -6.44074 -1.01866 0.93260 1.38061 1.39474 1.40680 1.52012 2.34808 2.49919 2.60896 2.88720 2.94785 3.03467 3.16382 3.57462 3.61482 3.70051 3.82841 3.86086 3.93390 4.01259 4.11239 4.15906 4.23885 4.42656 4.53915 4.60123 4.66079 4.75274 4.83840 4.87112 4.91022 5.01067 5.05756 5.11500 5.19332 5.20674 5.20997 5.26265 5.34683 5.63738 5.71243 6.01279 6.41813 6.46585 6.68330 7.25923 8.82712 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.010314 B = 0.003158 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.032725 B = 8863.094339 C =11153.080669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.402 6.402 4 C 0.066 3.934 5 C -0.095 4.095 6 C -0.135 4.135 7 C -0.097 4.097 8 C -0.179 4.179 9 H 0.174 0.826 10 C 0.555 3.445 11 O -0.527 6.527 12 N -1.032 6.032 13 S 2.603 3.397 14 O -0.971 6.971 15 O -0.979 6.979 16 C -0.580 4.580 17 C 0.024 3.976 18 C -0.542 4.542 19 H 0.072 0.928 20 C -0.002 4.002 21 N -0.933 5.933 22 Si 0.976 3.024 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.262 1.262 26 C -0.100 4.100 27 H 0.090 0.910 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.153 0.847 36 H 0.094 0.906 37 H 0.451 0.549 38 H 0.131 0.869 39 H 0.150 0.850 40 H 0.016 0.984 41 H 0.004 0.996 42 H 0.269 0.731 43 H 0.061 0.939 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.020 -27.019 14.849 30.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.027 4.027 3 O -0.322 6.322 4 C 0.008 3.992 5 C -0.132 4.132 6 C -0.136 4.136 7 C -0.133 4.133 8 C -0.201 4.201 9 H 0.192 0.808 10 C 0.344 3.656 11 O -0.400 6.400 12 N -0.799 5.799 13 S 2.701 3.299 14 O -0.961 6.961 15 O -0.969 6.969 16 C -0.712 4.712 17 C -0.015 4.015 18 C -0.581 4.581 19 H 0.090 0.910 20 C -0.201 4.201 21 N -0.572 5.572 22 Si 0.799 3.201 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.186 1.186 26 C -0.137 4.137 27 H 0.109 0.891 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.126 0.874 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.171 0.829 36 H 0.113 0.887 37 H 0.292 0.708 38 H 0.149 0.851 39 H 0.168 0.832 40 H 0.034 0.966 41 H 0.022 0.978 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.256 -26.471 13.517 29.749 hybrid contribution -0.825 0.935 -0.087 1.250 sum 0.431 -25.536 13.430 28.855 Atomic orbital electron populations 1.21792 0.93645 1.03255 1.02367 1.22694 0.95907 0.83045 1.01016 1.87964 1.21481 1.28015 1.94738 1.23674 0.80599 0.97797 0.97106 1.22995 0.95755 0.98392 0.96079 1.22017 0.92746 0.98778 1.00097 1.23096 0.92024 0.94288 1.03938 1.22388 1.10070 0.86764 1.00888 0.80825 1.20532 0.75749 0.83734 0.85587 1.90912 1.41721 1.80868 1.26544 1.54798 1.54522 1.30533 1.40089 1.05267 0.77828 0.73367 0.73389 1.93561 1.62087 1.64025 1.76420 1.93543 1.84053 1.77152 1.42127 1.30240 1.20798 1.09505 1.10689 1.18815 0.99166 0.90486 0.93067 1.21474 0.95694 1.12658 1.28289 0.90977 1.26118 1.02624 0.96950 0.94409 1.70091 1.36071 1.21720 1.29313 0.85288 0.78233 0.78687 0.77910 1.19056 1.20583 1.18617 1.22659 0.96370 0.97569 0.97144 0.89080 0.92356 0.93088 0.92742 0.91720 0.87421 0.89289 0.87738 0.82942 0.88715 0.70844 0.85113 0.83197 0.96575 0.97764 0.92232 0.91981 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.28 71.98 0.74 -1.23 16 2 C 0.05 0.68 6.50 71.98 0.47 1.15 16 3 O -0.40 -8.33 10.35 -148.98 -1.54 -9.87 16 4 C 0.07 1.10 4.29 31.19 0.13 1.24 16 5 C -0.09 -1.21 7.94 31.04 0.25 -0.96 16 6 C -0.14 -2.18 2.88 -52.31 -0.15 -2.34 16 7 C -0.10 -1.12 10.24 30.46 0.31 -0.81 16 8 C -0.18 -2.73 6.19 -11.68 -0.07 -2.80 16 9 H 0.17 1.26 8.14 -2.39 -0.02 1.24 16 10 C 0.56 14.29 7.35 87.66 0.64 14.94 16 11 O -0.53 -18.69 13.24 13.33 0.18 -18.52 16 12 N -1.03 -24.83 5.60 -173.53 -0.97 -25.80 16 13 S 2.60 96.21 5.11 -56.49 -0.29 95.92 16 14 O -0.97 -38.52 18.08 -127.65 -2.31 -40.83 16 15 O -0.98 -44.51 17.04 -120.72 -2.06 -46.57 16 16 C -0.58 -23.88 5.82 71.98 0.42 -23.46 16 17 C 0.02 1.29 4.98 29.85 0.15 1.44 16 18 C -0.54 -31.43 9.11 25.60 0.23 -31.19 16 19 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 20 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 21 N -0.93 -57.99 13.29 21.45 0.28 -57.70 16 22 Si 0.98 44.71 29.54 68.60 2.03 46.73 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 26 C -0.10 -2.29 6.30 30.98 0.20 -2.10 16 27 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 1.33 7.88 -2.39 -0.02 1.31 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.15 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.45 6.38 8.79 -96.75 -0.85 5.53 16 38 H 0.13 5.40 7.19 -2.39 -0.02 5.38 16 39 H 0.15 5.16 8.14 -2.39 -0.02 5.14 16 40 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 43 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 2.01 8.05 -2.39 -0.02 1.99 16 Total: -1.00 -85.78 382.87 -0.75 -86.53 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.15 Total: 15.90 kcal Atomic # 6 Polarization: -49.58 SS G_CDS: 3.78 Total: -45.80 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -0.69 Total: -83.50 kcal Atomic # 8 Polarization: -110.05 SS G_CDS: -5.73 Total: -115.78 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: 96.21 SS G_CDS: -0.29 Total: 95.92 kcal Total: -85.78 -0.75 -86.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870269331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.649 kcal (2) G-P(sol) polarization free energy of solvation -85.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds