Wall clock time and date at job start Tue Mar 31 2020 18:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46748 * 2 1 4 4 C 1.42898 * 113.99821 * 179.97438 * 3 2 1 5 5 C 1.53883 * 113.58919 * 247.66781 * 4 3 2 6 6 C 1.53258 * 86.88413 * 220.42820 * 5 4 3 7 7 C 1.52465 * 128.58671 * 165.11319 * 6 5 4 8 8 C 1.52460 * 128.58371 * 245.05643 * 6 5 4 9 9 H 1.09001 * 117.51647 * 349.89253 * 8 6 5 10 10 C 1.50709 * 117.51164 * 134.94743 * 8 6 5 11 11 O 1.21280 * 119.99888 * 359.97438 * 10 8 6 12 12 N 1.34770 * 119.99673 * 180.02562 * 10 8 6 13 13 S 1.65605 * 119.99671 * 179.97438 * 12 10 8 14 14 O 1.42100 * 104.27700 * 181.07060 * 13 12 10 15 15 O 1.42097 * 104.27954 * 308.93168 * 13 12 10 16 16 C 1.81403 * 104.44865 * 65.00281 * 13 12 10 17 17 C 1.53000 * 109.47190 * 179.97438 * 16 13 12 18 18 C 1.50693 * 109.47109 * 179.97438 * 17 16 13 19 19 H 1.07998 * 120.00517 * 0.02562 * 18 17 16 20 20 C 1.37884 * 120.00178 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99461 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00254 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46799 * 90.00168 * 22 20 18 24 24 H 1.48493 * 109.46872 * 209.99873 * 22 20 18 25 25 H 1.48498 * 109.46978 * 330.00275 * 22 20 18 26 26 C 1.53260 * 87.69159 * 25.08143 * 6 5 4 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46955 * 299.99993 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99822 * 1 2 3 30 30 H 1.09000 * 109.47050 * 120.00178 * 2 1 3 31 31 H 1.09001 * 109.46801 * 240.00290 * 2 1 3 32 32 H 1.09000 * 112.82947 * 18.88558 * 4 3 2 33 33 H 1.08998 * 113.64798 * 334.92689 * 5 4 3 34 34 H 1.09005 * 113.64688 * 105.93522 * 5 4 3 35 35 H 1.08997 * 117.50942 * 225.04984 * 7 6 5 36 36 H 1.08997 * 117.51345 * 10.15055 * 7 6 5 37 37 H 0.96995 * 120.00666 * 0.02562 * 12 10 8 38 38 H 1.09007 * 109.46583 * 299.99507 * 16 13 12 39 39 H 1.08998 * 109.47223 * 59.99617 * 16 13 12 40 40 H 1.08999 * 109.47392 * 299.99974 * 17 16 13 41 41 H 1.09009 * 109.46888 * 59.99741 * 17 16 13 42 42 H 0.97003 * 119.99204 * 180.02562 * 21 20 18 43 43 H 1.08996 * 113.64280 * 220.41928 * 26 6 5 44 44 H 1.08997 * 113.64455 * 89.41305 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 4.0018 2.0433 1.3052 6 6 4.9770 2.8344 0.4266 7 6 5.8491 4.0253 0.8082 8 6 6.4948 2.7161 0.3461 9 1 6.9931 2.1062 1.0997 10 6 7.1197 2.6941 -1.0251 11 8 6.4188 2.7686 -2.0121 12 7 8.4572 2.5904 -1.1546 13 16 9.1437 2.5656 -2.6614 14 8 10.5352 2.4244 -2.4102 15 8 8.4198 1.5620 -3.3599 16 6 8.7843 4.2050 -3.3496 17 6 9.3750 4.3079 -4.7573 18 6 9.0759 5.6696 -5.3292 19 1 8.5205 6.3899 -4.7469 20 6 9.5123 5.9965 -6.5957 21 7 10.1892 5.1196 -7.3046 22 14 9.1422 7.6847 -7.3044 23 1 10.2408 8.6204 -6.9539 24 1 9.0277 7.5871 -8.7817 25 1 7.8640 8.1887 -6.7410 26 6 3.9485 2.7263 -0.7045 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.9277 0.5460 -0.3242 33 1 3.2960 2.6707 1.8494 34 1 4.4879 1.3019 1.9395 35 1 5.8763 4.8704 0.1204 36 1 5.9227 4.2771 1.8662 37 1 9.0176 2.5297 -0.3653 38 1 7.7050 4.3507 -3.3966 39 1 9.2271 4.9713 -2.7133 40 1 10.4542 4.1623 -4.7100 41 1 8.9326 3.5416 -5.3939 42 1 10.4965 5.3497 -8.1955 43 1 4.3917 2.5325 -1.6813 44 1 3.2278 3.5439 -0.7197 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870269332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:43 Heat of formation + Delta-G solvation = -114.613159 kcal Electronic energy + Delta-G solvation = -26371.972990 eV Core-core repulsion = 22418.323414 eV Total energy + Delta-G solvation = -3953.649576 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.90905 -39.22052 -37.26442 -36.68486 -35.63316 -34.48447 -33.90145 -33.50445 -31.18991 -30.89792 -26.02160 -25.69479 -25.20075 -23.19051 -22.46293 -21.71776 -21.32667 -19.53590 -18.75321 -17.68825 -17.58238 -17.15736 -16.53146 -15.91365 -15.83162 -15.67940 -15.27423 -14.95091 -14.72434 -14.54656 -14.29951 -13.83102 -13.44372 -13.28012 -12.85261 -12.60870 -12.54253 -12.50358 -12.21035 -12.09542 -11.81249 -11.74135 -11.63517 -11.59061 -11.32941 -11.08767 -11.01042 -10.88297 -10.85975 -10.66720 -10.42571 -10.37259 -10.27308 -9.90933 -9.71508 -9.54192 -9.18703 -8.50113 -6.12486 -4.17889 0.48250 1.92341 2.68129 3.24274 3.26898 3.33136 3.36497 3.57869 3.79043 4.06551 4.20374 4.37318 4.39263 4.41600 4.54479 4.57552 4.68181 4.79112 4.83534 4.93155 5.03616 5.10256 5.20511 5.22904 5.34346 5.37479 5.46300 5.56203 5.58125 5.62268 5.65136 5.71310 5.78605 5.94764 5.98166 6.15538 6.44658 6.63366 7.05998 7.27727 7.34312 7.47116 7.80585 8.16320 8.85023 9.46651 10.98635 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.002768 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.326978 B =10111.623790 C =10996.776129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.375 6.375 4 C 0.065 3.935 5 C -0.111 4.111 6 C -0.127 4.127 7 C -0.126 4.126 8 C -0.168 4.168 9 H 0.133 0.867 10 C 0.563 3.437 11 O -0.484 6.484 12 N -1.055 6.055 13 S 2.565 3.435 14 O -0.955 6.955 15 O -0.938 6.938 16 C -0.575 4.575 17 C 0.030 3.970 18 C -0.519 4.519 19 H 0.062 0.938 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.272 1.272 26 C -0.103 4.103 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.429 0.571 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.034 0.966 41 H 0.036 0.964 42 H 0.265 0.735 43 H 0.104 0.896 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.869 -7.109 21.753 26.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.294 6.294 4 C 0.007 3.993 5 C -0.148 4.148 6 C -0.128 4.128 7 C -0.163 4.163 8 C -0.191 4.191 9 H 0.151 0.849 10 C 0.349 3.651 11 O -0.355 6.355 12 N -0.816 5.816 13 S 2.666 3.334 14 O -0.945 6.945 15 O -0.928 6.928 16 C -0.709 4.709 17 C -0.010 4.010 18 C -0.558 4.558 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.729 3.271 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.140 4.140 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.264 0.736 38 H 0.149 0.851 39 H 0.139 0.861 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.122 0.878 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.984 -7.733 20.513 25.479 hybrid contribution 0.316 1.105 0.194 1.166 sum -12.667 -6.628 20.708 25.163 Atomic orbital electron populations 1.21749 0.93872 1.02163 1.03108 1.22514 0.95534 0.84113 1.00046 1.87942 1.20687 1.26178 1.94577 1.23578 0.80778 0.98504 0.96399 1.23081 0.96465 0.98592 0.96666 1.21746 0.88897 1.01162 1.00971 1.22906 1.00057 0.90659 1.02696 1.22205 0.95603 1.05272 0.96026 0.84926 1.19640 0.81020 0.73300 0.91095 1.90852 1.60337 1.44910 1.39407 1.55403 1.15652 1.80331 1.30205 1.06716 0.73897 0.79741 0.73075 1.93590 1.30596 1.87214 1.83127 1.93596 1.72870 1.55561 1.70811 1.30333 1.11865 1.17039 1.11692 1.18989 0.96486 1.00174 0.85303 1.20969 1.36280 0.98108 1.00463 0.91976 1.25073 0.94891 0.97666 0.96880 1.69960 1.36830 1.34624 1.11433 0.86441 0.78782 0.83622 0.78290 1.20468 1.20976 1.19702 1.22952 0.95087 0.97132 0.98823 0.91229 0.91966 0.91767 0.93541 0.93226 0.89373 0.88322 0.91111 0.87382 0.87088 0.73638 0.85075 0.86059 0.94778 0.94590 0.92507 0.87808 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.05 0.45 6.50 37.16 0.24 0.69 16 3 O -0.37 -4.01 10.35 -35.23 -0.36 -4.38 16 4 C 0.07 0.65 4.31 -25.81 -0.11 0.54 16 5 C -0.11 -0.88 7.93 -26.14 -0.21 -1.09 16 6 C -0.13 -1.18 2.88 -154.79 -0.45 -1.62 16 7 C -0.13 -0.98 10.24 -26.94 -0.28 -1.26 16 8 C -0.17 -1.51 6.19 -91.98 -0.57 -2.08 16 9 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 10 C 0.56 7.34 7.35 -10.98 -0.08 7.26 16 11 O -0.48 -8.12 12.20 -11.58 -0.14 -8.26 16 12 N -1.06 -13.13 5.60 31.22 0.17 -12.96 16 13 S 2.57 46.22 5.11 -107.50 -0.55 45.67 16 14 O -0.95 -18.82 18.08 -57.54 -1.04 -19.86 16 15 O -0.94 -20.42 17.04 -64.79 -1.10 -21.53 16 16 C -0.57 -11.33 5.82 37.16 0.22 -11.12 16 17 C 0.03 0.77 4.98 -27.89 -0.14 0.63 16 18 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 19 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 20 C 0.06 1.64 5.46 -17.81 -0.10 1.54 16 21 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 22 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 C -0.10 -1.16 7.46 -26.13 -0.20 -1.36 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.86 7.87 -51.93 -0.41 0.45 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.43 3.52 8.79 -34.47 -0.30 3.22 16 38 H 0.13 2.54 7.19 -51.92 -0.37 2.16 16 39 H 0.12 2.06 8.14 -51.93 -0.42 1.63 16 40 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.04 0.99 8.14 -51.92 -0.42 0.57 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.10 1.44 5.83 -51.93 -0.30 1.14 16 44 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 380.75 15.07 5.74 5.74 Total: -1.00 -36.75 380.75 -10.01 -46.76 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.85 Total: 1.66 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -1.59 Total: -23.33 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.91 Total: -38.87 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -2.65 Total: -54.02 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 46.22 SS G_CDS: -0.55 Total: 45.67 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.75 -10.01 -46.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870269332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.852 kcal (2) G-P(sol) polarization free energy of solvation -36.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds