Wall clock time and date at job start Tue Mar 31 2020 18:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46748 * 2 1 4 4 C 1.42898 * 113.99821 * 179.97438 * 3 2 1 5 5 C 1.53883 * 113.58919 * 247.66781 * 4 3 2 6 6 C 1.53258 * 86.88413 * 220.42820 * 5 4 3 7 7 C 1.52465 * 128.58671 * 165.11319 * 6 5 4 8 8 C 1.52460 * 128.58371 * 245.05643 * 6 5 4 9 9 H 1.09001 * 117.51647 * 349.89253 * 8 6 5 10 10 C 1.50709 * 117.51164 * 134.94743 * 8 6 5 11 11 O 1.21280 * 119.99888 * 359.97438 * 10 8 6 12 12 N 1.34770 * 119.99673 * 180.02562 * 10 8 6 13 13 S 1.65605 * 119.99671 * 179.97438 * 12 10 8 14 14 O 1.42100 * 104.27700 * 181.07060 * 13 12 10 15 15 O 1.42097 * 104.27954 * 308.93168 * 13 12 10 16 16 C 1.81403 * 104.44865 * 65.00281 * 13 12 10 17 17 C 1.53000 * 109.47190 * 179.97438 * 16 13 12 18 18 C 1.50693 * 109.47109 * 179.97438 * 17 16 13 19 19 H 1.07998 * 120.00517 * 0.02562 * 18 17 16 20 20 C 1.37884 * 120.00178 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99461 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00254 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46799 * 90.00168 * 22 20 18 24 24 H 1.48493 * 109.46872 * 209.99873 * 22 20 18 25 25 H 1.48498 * 109.46978 * 330.00275 * 22 20 18 26 26 C 1.53260 * 87.69159 * 25.08143 * 6 5 4 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46955 * 299.99993 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99822 * 1 2 3 30 30 H 1.09000 * 109.47050 * 120.00178 * 2 1 3 31 31 H 1.09001 * 109.46801 * 240.00290 * 2 1 3 32 32 H 1.09000 * 112.82947 * 18.88558 * 4 3 2 33 33 H 1.08998 * 113.64798 * 334.92689 * 5 4 3 34 34 H 1.09005 * 113.64688 * 105.93522 * 5 4 3 35 35 H 1.08997 * 117.50942 * 225.04984 * 7 6 5 36 36 H 1.08997 * 117.51345 * 10.15055 * 7 6 5 37 37 H 0.96995 * 120.00666 * 0.02562 * 12 10 8 38 38 H 1.09007 * 109.46583 * 299.99507 * 16 13 12 39 39 H 1.08998 * 109.47223 * 59.99617 * 16 13 12 40 40 H 1.08999 * 109.47392 * 299.99974 * 17 16 13 41 41 H 1.09009 * 109.46888 * 59.99741 * 17 16 13 42 42 H 0.97003 * 119.99204 * 180.02562 * 21 20 18 43 43 H 1.08996 * 113.64280 * 220.41928 * 26 6 5 44 44 H 1.08997 * 113.64455 * 89.41305 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 4.0018 2.0433 1.3052 6 6 4.9770 2.8344 0.4266 7 6 5.8491 4.0253 0.8082 8 6 6.4948 2.7161 0.3461 9 1 6.9931 2.1062 1.0997 10 6 7.1197 2.6941 -1.0251 11 8 6.4188 2.7686 -2.0121 12 7 8.4572 2.5904 -1.1546 13 16 9.1437 2.5656 -2.6614 14 8 10.5352 2.4244 -2.4102 15 8 8.4198 1.5620 -3.3599 16 6 8.7843 4.2050 -3.3496 17 6 9.3750 4.3079 -4.7573 18 6 9.0759 5.6696 -5.3292 19 1 8.5205 6.3899 -4.7469 20 6 9.5123 5.9965 -6.5957 21 7 10.1892 5.1196 -7.3046 22 14 9.1422 7.6847 -7.3044 23 1 10.2408 8.6204 -6.9539 24 1 9.0277 7.5871 -8.7817 25 1 7.8640 8.1887 -6.7410 26 6 3.9485 2.7263 -0.7045 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.9277 0.5460 -0.3242 33 1 3.2960 2.6707 1.8494 34 1 4.4879 1.3019 1.9395 35 1 5.8763 4.8704 0.1204 36 1 5.9227 4.2771 1.8662 37 1 9.0176 2.5297 -0.3653 38 1 7.7050 4.3507 -3.3966 39 1 9.2271 4.9713 -2.7133 40 1 10.4542 4.1623 -4.7100 41 1 8.9326 3.5416 -5.3939 42 1 10.4965 5.3497 -8.1955 43 1 4.3917 2.5325 -1.6813 44 1 3.2278 3.5439 -0.7197 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870269332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:40 Heat of formation + Delta-G solvation = -141.791908 kcal Electronic energy + Delta-G solvation = -26373.151549 eV Core-core repulsion = 22418.323414 eV Total energy + Delta-G solvation = -3954.828135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.82498 -40.12134 -38.34826 -37.94208 -37.24754 -35.97916 -35.62371 -34.21753 -33.19840 -31.52678 -27.68758 -26.75412 -26.16662 -23.80884 -23.65370 -23.16195 -22.29572 -20.81172 -19.78941 -19.15390 -18.60473 -18.34614 -17.86877 -17.33424 -16.82474 -16.59608 -16.55095 -16.36980 -16.19650 -15.79743 -15.22668 -15.01673 -14.57134 -14.48140 -13.96897 -13.88010 -13.78236 -13.50488 -13.39654 -13.27769 -13.17438 -13.04003 -12.96280 -12.86493 -12.74902 -12.32979 -12.26943 -12.22451 -12.03746 -12.01463 -11.76746 -11.63612 -11.37206 -11.17735 -11.08315 -10.67287 -10.65800 -10.29846 -8.29214 -6.43282 -1.02195 0.89431 1.38756 1.40044 1.41248 1.52469 2.35269 2.51798 2.56959 2.87567 2.92753 3.04215 3.16275 3.49561 3.64157 3.70461 3.83939 3.86845 3.95941 4.02093 4.05249 4.13775 4.21177 4.39695 4.50718 4.59169 4.66752 4.79215 4.84909 4.87132 4.91430 5.04005 5.05621 5.14829 5.20025 5.21560 5.23690 5.27037 5.31623 5.64362 5.70248 6.01736 6.35663 6.46231 6.69248 7.26647 8.83249 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.002768 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.326978 B =10111.623790 C =10996.776129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.394 6.394 4 C 0.059 3.941 5 C -0.089 4.089 6 C -0.137 4.137 7 C -0.108 4.108 8 C -0.164 4.164 9 H 0.175 0.825 10 C 0.556 3.444 11 O -0.525 6.525 12 N -1.032 6.032 13 S 2.600 3.400 14 O -0.971 6.971 15 O -0.980 6.980 16 C -0.578 4.578 17 C 0.023 3.977 18 C -0.540 4.540 19 H 0.074 0.926 20 C -0.004 4.004 21 N -0.933 5.933 22 Si 0.976 3.024 23 H -0.266 1.266 24 H -0.282 1.282 25 H -0.261 1.261 26 C -0.117 4.117 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.148 0.852 37 H 0.451 0.549 38 H 0.133 0.867 39 H 0.152 0.848 40 H 0.015 0.985 41 H 0.003 0.997 42 H 0.268 0.732 43 H 0.069 0.931 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.405 -6.177 25.084 29.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.314 6.314 4 C 0.002 3.998 5 C -0.127 4.127 6 C -0.138 4.138 7 C -0.145 4.145 8 C -0.186 4.186 9 H 0.192 0.808 10 C 0.345 3.655 11 O -0.399 6.399 12 N -0.799 5.799 13 S 2.699 3.301 14 O -0.961 6.961 15 O -0.970 6.970 16 C -0.711 4.711 17 C -0.016 4.016 18 C -0.579 4.579 19 H 0.092 0.908 20 C -0.202 4.202 21 N -0.572 5.572 22 Si 0.799 3.201 23 H -0.191 1.191 24 H -0.207 1.207 25 H -0.185 1.185 26 C -0.155 4.155 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.166 0.834 37 H 0.292 0.708 38 H 0.151 0.849 39 H 0.170 0.830 40 H 0.034 0.966 41 H 0.022 0.978 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.496 -6.791 23.868 28.248 hybrid contribution 0.431 0.760 -0.826 1.202 sum -13.064 -6.031 23.042 27.166 Atomic orbital electron populations 1.21765 0.92934 1.03293 1.02675 1.22695 0.96381 0.83244 1.00573 1.87913 1.21087 1.27638 1.94770 1.23649 0.80650 0.97714 0.97832 1.22948 0.95675 0.98512 0.95529 1.21782 0.88818 1.02976 1.00192 1.23092 0.97543 0.89439 1.04449 1.22356 0.95196 1.07210 0.93884 0.80820 1.20548 0.80496 0.71878 0.92562 1.90867 1.61048 1.46681 1.41283 1.54819 1.15996 1.79964 1.29134 1.05340 0.73039 0.78013 0.73688 1.93562 1.31781 1.86987 1.83803 1.93545 1.73764 1.56639 1.73004 1.30228 1.11750 1.20154 1.08934 1.18822 0.95455 0.98755 0.88576 1.21463 1.36182 0.99144 1.01108 0.90827 1.26132 0.94533 1.02153 0.97406 1.70101 1.38102 1.37065 1.11955 0.85285 0.79250 0.78274 0.77296 1.19125 1.20742 1.18476 1.22945 0.96258 0.98068 0.98211 0.89337 0.91732 0.92826 0.91955 0.93730 0.89733 0.87618 0.88786 0.88464 0.83435 0.70823 0.84904 0.83039 0.96633 0.97821 0.92285 0.91250 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.28 71.98 0.74 -1.19 16 2 C 0.05 0.75 6.50 71.98 0.47 1.22 16 3 O -0.39 -8.30 10.35 -148.98 -1.54 -9.85 16 4 C 0.06 1.15 4.31 31.19 0.13 1.28 16 5 C -0.09 -1.16 7.93 30.98 0.25 -0.91 16 6 C -0.14 -2.21 2.88 -52.37 -0.15 -2.36 16 7 C -0.11 -1.29 10.24 30.46 0.31 -0.98 16 8 C -0.16 -2.39 6.19 -11.68 -0.07 -2.46 16 9 H 0.17 1.13 8.14 -2.39 -0.02 1.11 16 10 C 0.56 13.72 7.35 87.66 0.64 14.36 16 11 O -0.53 -17.92 12.20 13.36 0.16 -17.76 16 12 N -1.03 -23.86 5.60 -173.53 -0.97 -24.83 16 13 S 2.60 94.06 5.11 -56.49 -0.29 93.78 16 14 O -0.97 -37.96 18.08 -127.65 -2.31 -40.27 16 15 O -0.98 -43.97 17.04 -120.71 -2.06 -46.02 16 16 C -0.58 -23.07 5.82 71.98 0.42 -22.65 16 17 C 0.02 1.23 4.98 29.85 0.15 1.38 16 18 C -0.54 -30.73 9.11 25.60 0.23 -30.49 16 19 H 0.07 3.90 7.74 -2.91 -0.02 3.87 16 20 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 21 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 22 Si 0.98 44.09 29.54 68.60 2.03 46.11 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 26 C -0.12 -2.69 7.46 30.98 0.23 -2.46 16 27 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 1.64 7.87 -2.39 -0.02 1.62 16 33 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.15 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.45 6.00 8.79 -96.75 -0.85 5.15 16 38 H 0.13 5.26 7.19 -2.39 -0.02 5.24 16 39 H 0.15 4.99 8.14 -2.39 -0.02 4.97 16 40 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.00 0.20 8.14 -2.38 -0.02 0.19 16 42 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.07 2.07 5.83 -2.39 -0.01 2.05 16 44 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -83.68 380.75 -0.72 -84.40 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.16 Total: 16.67 kcal Atomic # 6 Polarization: -48.83 SS G_CDS: 3.82 Total: -45.02 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -0.69 Total: -82.04 kcal Atomic # 8 Polarization: -108.15 SS G_CDS: -5.74 Total: -113.89 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 94.06 SS G_CDS: -0.29 Total: 93.78 kcal Total: -83.68 -0.72 -84.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870269332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.392 kcal (2) G-P(sol) polarization free energy of solvation -83.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds