Wall clock time and date at job start Tue Mar 31 2020 15:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 117.00018 * 2 1 4 4 O 1.20822 * 120.00350 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00027 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.47312 * 180.02562 * 5 3 2 7 7 N 1.46495 * 109.47338 * 179.97438 * 6 5 3 8 8 C 1.36793 * 120.00026 * 274.48043 * 7 6 5 9 9 H 1.07997 * 120.00161 * 132.19247 * 8 7 6 10 10 C 1.39071 * 119.99698 * 312.19683 * 8 7 6 11 11 N 1.31352 * 120.00322 * 3.74854 * 10 8 7 12 12 Si 1.86801 * 119.99712 * 183.74534 * 10 8 7 13 13 H 1.48504 * 109.46886 * 60.00126 * 12 10 8 14 14 H 1.48505 * 109.46930 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47374 * 300.00047 * 12 10 8 16 16 C 1.34776 * 120.00090 * 94.47782 * 7 6 5 17 17 O 1.21713 * 120.00014 * 4.35738 * 16 7 6 18 18 C 1.46807 * 120.00017 * 184.36120 * 16 7 6 19 19 C 1.35968 * 125.14505 * 175.01453 * 18 16 7 20 20 C 1.46208 * 106.06957 * 180.02562 * 19 18 16 21 21 C 1.39728 * 134.17569 * 179.38510 * 20 19 18 22 22 C 1.36619 * 119.70900 * 180.02562 * 21 20 19 23 23 C 1.38841 * 120.43731 * 0.02562 * 22 21 20 24 24 C 1.37811 * 120.75111 * 359.97089 * 23 22 21 25 25 C 1.50700 * 120.07127 * 180.02562 * 24 23 22 26 26 C 1.39003 * 119.85854 * 0.27758 * 24 23 22 27 27 O 1.34738 * 133.22514 * 179.74909 * 26 24 23 28 28 H 1.09001 * 109.47143 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46939 * 299.99792 * 1 2 3 30 30 H 1.08998 * 109.47135 * 60.00069 * 1 2 3 31 31 H 1.08994 * 109.47410 * 59.99969 * 5 3 2 32 32 H 1.09008 * 109.46716 * 299.99733 * 5 3 2 33 33 H 1.08998 * 109.46616 * 59.99631 * 6 5 3 34 34 H 1.09001 * 109.46610 * 299.99779 * 6 5 3 35 35 H 0.96994 * 120.00359 * 179.97438 * 11 10 8 36 36 H 1.07998 * 126.96082 * 359.40951 * 19 18 16 37 37 H 1.08002 * 120.14388 * 0.05295 * 21 20 19 38 38 H 1.07994 * 119.78110 * 180.02562 * 22 21 20 39 39 H 1.08007 * 119.61949 * 179.97438 * 23 22 21 40 40 H 1.09003 * 109.47214 * 89.99978 * 25 24 23 41 41 H 1.09001 * 109.46884 * 329.99896 * 25 24 23 42 42 H 1.08999 * 109.47086 * 210.00023 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7421 0.0002 7 7 5.4631 2.8187 0.0002 8 6 6.1510 2.7615 1.1812 9 1 7.0007 2.1022 1.2799 10 6 5.7561 3.5523 2.2549 11 7 4.6795 4.2988 2.1599 12 14 6.7567 3.5527 3.8323 13 1 8.1398 4.0081 3.5410 14 1 6.1301 4.4724 4.8157 15 1 6.7959 2.1786 4.3941 16 6 6.1314 2.9456 -1.1633 17 8 5.5178 3.0762 -2.2063 18 6 7.5993 2.9262 -1.1727 19 6 8.3752 2.9487 -2.2890 20 6 9.7597 2.9157 -1.8202 21 6 11.0034 2.9067 -2.4570 22 6 12.1465 2.8718 -1.7097 23 6 12.0798 2.8447 -0.3231 24 6 10.8632 2.8530 0.3241 25 6 10.8087 2.8238 1.8298 26 6 9.6863 2.8831 -0.4150 27 8 8.3827 2.8934 -0.0744 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.9557 0.7809 -0.8907 32 1 3.9564 0.7805 0.8893 33 1 3.6108 3.2355 0.8906 34 1 3.6101 3.2367 -0.8894 35 1 4.4038 4.8500 2.9088 36 1 8.0372 2.9747 -3.3144 37 1 11.0607 2.9278 -3.5353 38 1 13.1084 2.8653 -2.2007 39 1 12.9919 2.8168 0.2547 40 1 10.8135 3.8441 2.2134 41 1 11.6758 2.2869 2.2144 42 1 9.8973 2.3193 2.1507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871341080.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:34 Heat of formation + Delta-G solvation = -88.817738 kcal Electronic energy + Delta-G solvation = -28308.400909 eV Core-core repulsion = 24220.425955 eV Total energy + Delta-G solvation = -4087.974954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.89701 -40.06750 -38.67818 -37.57398 -36.20675 -35.21065 -33.22037 -32.10476 -31.02114 -30.85648 -29.08270 -27.52381 -26.66940 -25.22690 -24.44212 -22.23294 -22.16017 -20.36297 -20.14974 -19.53947 -17.99806 -17.32406 -17.07763 -16.24988 -16.20895 -15.98676 -15.64717 -15.30109 -14.96357 -14.55678 -14.23923 -13.84728 -13.63795 -13.46593 -13.27394 -13.06191 -12.93722 -12.62206 -12.36864 -12.20429 -12.13721 -12.09139 -11.79944 -11.64049 -11.43010 -11.28637 -11.09213 -10.90282 -10.60701 -10.55392 -10.48543 -10.10787 -10.04101 -9.57086 -9.35427 -8.97324 -8.23313 -7.85126 -7.59540 -6.46300 -4.37602 1.05078 1.66759 2.39433 2.65356 3.01794 3.07504 3.13439 3.15823 3.24076 3.92839 3.95541 4.15336 4.40854 4.84388 4.88116 5.03292 5.11263 5.23390 5.29940 5.31036 5.37546 5.39763 5.61646 5.62163 5.73677 5.76509 5.83570 5.85564 5.94905 6.02787 6.08250 6.23571 6.29166 6.52319 6.61730 6.65642 6.70723 6.79143 6.83008 6.96046 7.21536 7.51944 7.61962 7.73405 8.16616 8.22586 8.86389 9.14598 9.58709 10.48955 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013563 B = 0.003880 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.991292 B = 7215.290733 C = 8630.642232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.467 3.533 4 O -0.504 6.504 5 C -0.122 4.122 6 C 0.111 3.889 7 N -0.415 5.415 8 C -0.341 4.341 9 H 0.101 0.899 10 C 0.054 3.946 11 N -0.858 5.858 12 Si 0.919 3.081 13 H -0.265 1.265 14 H -0.282 1.282 15 H -0.269 1.269 16 C 0.536 3.464 17 O -0.577 6.577 18 C 0.045 3.955 19 C -0.175 4.175 20 C -0.130 4.130 21 C -0.078 4.078 22 C -0.141 4.141 23 C -0.108 4.108 24 C -0.069 4.069 25 C -0.114 4.114 26 C 0.047 3.953 27 O -0.141 6.141 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.137 0.863 34 H 0.069 0.931 35 H 0.276 0.724 36 H 0.160 0.840 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.550 -6.110 -1.087 9.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.310 3.690 4 O -0.390 6.390 5 C -0.161 4.161 6 C -0.012 4.012 7 N -0.131 5.131 8 C -0.468 4.468 9 H 0.119 0.881 10 C -0.154 4.154 11 N -0.493 5.493 12 Si 0.744 3.256 13 H -0.189 1.189 14 H -0.207 1.207 15 H -0.194 1.194 16 C 0.324 3.676 17 O -0.464 6.464 18 C -0.006 4.006 19 C -0.196 4.196 20 C -0.131 4.131 21 C -0.096 4.096 22 C -0.159 4.159 23 C -0.126 4.126 24 C -0.070 4.070 25 C -0.171 4.171 26 C -0.002 4.002 27 O -0.040 6.040 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.154 0.846 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.178 0.822 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.725 -5.601 -1.133 8.089 hybrid contribution 0.288 0.101 0.642 0.711 sum 6.013 -5.500 -0.491 8.164 Atomic orbital electron populations 1.23168 0.77322 1.03033 1.02360 1.86534 1.22773 1.34379 1.84673 1.23985 0.92288 0.80909 0.71798 1.90653 1.67240 1.36196 1.44955 1.21835 0.86034 1.03002 1.05207 1.21659 0.81227 0.91524 1.06792 1.43300 1.05093 1.59815 1.04873 1.19576 1.13435 1.24704 0.89100 0.88147 1.25627 0.95795 0.93758 1.00219 1.69547 1.21925 1.25067 1.32776 0.86118 0.80430 0.78645 0.80382 1.18925 1.20707 1.19427 1.17320 0.82967 0.81981 0.85296 1.90742 1.66493 1.56439 1.32687 1.22416 0.92167 1.02074 0.83960 1.22504 0.89524 1.08337 0.99267 1.19946 0.94010 1.05996 0.93123 1.20241 0.90206 0.99606 0.99589 1.20614 0.97932 1.03576 0.93759 1.20724 0.95822 1.01636 0.94418 1.18798 0.88842 1.03498 0.95831 1.20769 1.03028 1.02665 0.90617 1.19890 0.84927 1.02284 0.93137 1.84711 1.12938 1.73703 1.32696 0.88626 0.92119 0.92179 0.88805 0.87445 0.84597 0.91226 0.91312 0.82243 0.85954 0.85911 0.85432 0.91074 0.91499 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -5.90 10.56 -39.24 -0.41 -6.31 16 3 C 0.47 8.85 7.96 36.01 0.29 9.13 16 4 O -0.50 -10.82 15.73 -18.75 -0.29 -11.11 16 5 C -0.12 -2.38 6.11 -27.88 -0.17 -2.55 16 6 C 0.11 2.61 4.43 -4.04 -0.02 2.59 16 7 N -0.42 -10.20 2.51 -116.26 -0.29 -10.49 16 8 C -0.34 -8.32 7.67 -15.03 -0.12 -8.44 16 9 H 0.10 2.41 6.24 -52.49 -0.33 2.08 16 10 C 0.05 1.31 5.40 -17.45 -0.09 1.21 16 11 N -0.86 -22.05 10.85 55.50 0.60 -21.45 16 12 Si 0.92 18.91 29.56 -169.99 -5.02 13.89 16 13 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 14 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 15 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 16 C 0.54 13.17 7.60 -12.80 -0.10 13.07 16 17 O -0.58 -14.98 16.33 5.18 0.08 -14.89 16 18 C 0.05 1.00 6.79 -36.93 -0.25 0.75 16 19 C -0.18 -3.42 10.81 -37.20 -0.40 -3.82 16 20 C -0.13 -2.32 6.38 -105.19 -0.67 -2.99 16 21 C -0.08 -1.12 10.06 -39.61 -0.40 -1.52 16 22 C -0.14 -1.76 9.98 -39.94 -0.40 -2.16 16 23 C -0.11 -1.40 9.67 -39.51 -0.38 -1.78 16 24 C -0.07 -1.09 5.89 -104.49 -0.62 -1.71 16 25 C -0.11 -1.60 10.02 36.01 0.36 -1.24 16 26 C 0.05 0.89 7.07 -38.35 -0.27 0.62 16 27 O -0.14 -3.08 7.48 2.70 0.02 -3.06 16 28 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 30 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 31 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 32 H 0.11 2.00 8.14 -51.92 -0.42 1.58 16 33 H 0.14 3.48 5.25 -51.93 -0.27 3.21 16 34 H 0.07 1.74 7.20 -51.93 -0.37 1.36 16 35 H 0.28 6.74 8.31 -40.82 -0.34 6.41 16 36 H 0.16 2.84 8.06 -52.49 -0.42 2.42 16 37 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 42 H 0.07 1.13 8.09 -51.93 -0.42 0.71 16 LS Contribution 364.96 15.07 5.50 5.50 Total: -1.00 -29.88 364.96 -7.16 -37.04 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.18 Total: 8.22 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -2.17 Total: 2.66 kcal Atomic # 7 Polarization: -32.25 SS G_CDS: 0.31 Total: -31.94 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -0.60 Total: -35.37 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.88 -7.16 -37.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341080.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.778 kcal (2) G-P(sol) polarization free energy of solvation -29.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds