Wall clock time and date at job start Tue Mar 31 2020 15:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 117.00018 * 2 1 4 4 O 1.20822 * 120.00350 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00027 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.47312 * 180.02562 * 5 3 2 7 7 N 1.46495 * 109.47338 * 179.97438 * 6 5 3 8 8 C 1.36793 * 120.00026 * 274.48043 * 7 6 5 9 9 H 1.07997 * 120.00161 * 132.19247 * 8 7 6 10 10 C 1.39071 * 119.99698 * 312.19683 * 8 7 6 11 11 N 1.31352 * 120.00322 * 3.74854 * 10 8 7 12 12 Si 1.86801 * 119.99712 * 183.74534 * 10 8 7 13 13 H 1.48504 * 109.46886 * 60.00126 * 12 10 8 14 14 H 1.48505 * 109.46930 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47374 * 300.00047 * 12 10 8 16 16 C 1.34776 * 120.00090 * 94.47782 * 7 6 5 17 17 O 1.21713 * 120.00014 * 4.35738 * 16 7 6 18 18 C 1.46807 * 120.00017 * 184.36120 * 16 7 6 19 19 C 1.35968 * 125.14505 * 175.01453 * 18 16 7 20 20 C 1.46208 * 106.06957 * 180.02562 * 19 18 16 21 21 C 1.39728 * 134.17569 * 179.38510 * 20 19 18 22 22 C 1.36619 * 119.70900 * 180.02562 * 21 20 19 23 23 C 1.38841 * 120.43731 * 0.02562 * 22 21 20 24 24 C 1.37811 * 120.75111 * 359.97089 * 23 22 21 25 25 C 1.50700 * 120.07127 * 180.02562 * 24 23 22 26 26 C 1.39003 * 119.85854 * 0.27758 * 24 23 22 27 27 O 1.34738 * 133.22514 * 179.74909 * 26 24 23 28 28 H 1.09001 * 109.47143 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46939 * 299.99792 * 1 2 3 30 30 H 1.08998 * 109.47135 * 60.00069 * 1 2 3 31 31 H 1.08994 * 109.47410 * 59.99969 * 5 3 2 32 32 H 1.09008 * 109.46716 * 299.99733 * 5 3 2 33 33 H 1.08998 * 109.46616 * 59.99631 * 6 5 3 34 34 H 1.09001 * 109.46610 * 299.99779 * 6 5 3 35 35 H 0.96994 * 120.00359 * 179.97438 * 11 10 8 36 36 H 1.07998 * 126.96082 * 359.40951 * 19 18 16 37 37 H 1.08002 * 120.14388 * 0.05295 * 21 20 19 38 38 H 1.07994 * 119.78110 * 180.02562 * 22 21 20 39 39 H 1.08007 * 119.61949 * 179.97438 * 23 22 21 40 40 H 1.09003 * 109.47214 * 89.99978 * 25 24 23 41 41 H 1.09001 * 109.46884 * 329.99896 * 25 24 23 42 42 H 1.08999 * 109.47086 * 210.00023 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7421 0.0002 7 7 5.4631 2.8187 0.0002 8 6 6.1510 2.7615 1.1812 9 1 7.0007 2.1022 1.2799 10 6 5.7561 3.5523 2.2549 11 7 4.6795 4.2988 2.1599 12 14 6.7567 3.5527 3.8323 13 1 8.1398 4.0081 3.5410 14 1 6.1301 4.4724 4.8157 15 1 6.7959 2.1786 4.3941 16 6 6.1314 2.9456 -1.1633 17 8 5.5178 3.0762 -2.2063 18 6 7.5993 2.9262 -1.1727 19 6 8.3752 2.9487 -2.2890 20 6 9.7597 2.9157 -1.8202 21 6 11.0034 2.9067 -2.4570 22 6 12.1465 2.8718 -1.7097 23 6 12.0798 2.8447 -0.3231 24 6 10.8632 2.8530 0.3241 25 6 10.8087 2.8238 1.8298 26 6 9.6863 2.8831 -0.4150 27 8 8.3827 2.8934 -0.0744 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.9557 0.7809 -0.8907 32 1 3.9564 0.7805 0.8893 33 1 3.6108 3.2355 0.8906 34 1 3.6101 3.2367 -0.8894 35 1 4.4038 4.8500 2.9088 36 1 8.0372 2.9747 -3.3144 37 1 11.0607 2.9278 -3.5353 38 1 13.1084 2.8653 -2.2007 39 1 12.9919 2.8168 0.2547 40 1 10.8135 3.8441 2.2134 41 1 11.6758 2.2869 2.2144 42 1 9.8973 2.3193 2.1507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871341080.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:28 Heat of formation + Delta-G solvation = -104.705246 kcal Electronic energy + Delta-G solvation = -28309.089843 eV Core-core repulsion = 24220.425955 eV Total energy + Delta-G solvation = -4088.663888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 6.62 seconds Orbital eigenvalues (eV) -43.32869 -41.57256 -40.44731 -38.82968 -37.69791 -37.05143 -34.47636 -33.94314 -32.69599 -32.20732 -30.48238 -28.73252 -27.77895 -27.08434 -26.01399 -23.71738 -23.44926 -21.80005 -21.56642 -21.32456 -19.66931 -18.84339 -18.47459 -17.76753 -17.68834 -17.53600 -17.12694 -16.67405 -16.57703 -16.18972 -15.67054 -15.53072 -15.09416 -14.81887 -14.66136 -14.35633 -14.24300 -13.93627 -13.93115 -13.81614 -13.72919 -13.23149 -13.12872 -13.04087 -12.80102 -12.75257 -12.60561 -12.48932 -12.13264 -11.96379 -11.81141 -11.79437 -11.62257 -11.23920 -10.93763 -10.84714 -9.69108 -9.46935 -9.00586 -8.32660 -6.30654 -0.29256 0.47437 0.92837 1.11959 1.41184 1.45521 1.51990 1.63006 1.79757 2.22026 2.35031 2.76664 2.79215 3.00260 3.64626 3.69469 3.82110 4.03873 4.08278 4.10408 4.21136 4.30634 4.31355 4.34746 4.40095 4.51089 4.56344 4.64571 4.67750 4.69487 4.77008 4.91930 4.93404 5.10859 5.25354 5.30469 5.35849 5.46117 5.50923 5.54582 5.60185 5.79067 5.86023 6.23359 6.34465 6.68798 6.97079 7.26939 7.70570 8.62988 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013563 B = 0.003880 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.991292 B = 7215.290733 C = 8630.642232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.476 3.524 4 O -0.535 6.535 5 C -0.112 4.112 6 C 0.116 3.884 7 N -0.425 5.425 8 C -0.345 4.345 9 H 0.102 0.898 10 C 0.011 3.989 11 N -0.892 5.892 12 Si 0.978 3.022 13 H -0.259 1.259 14 H -0.282 1.282 15 H -0.255 1.255 16 C 0.528 3.472 17 O -0.606 6.606 18 C -0.002 4.002 19 C -0.154 4.154 20 C -0.153 4.153 21 C -0.078 4.078 22 C -0.128 4.128 23 C -0.086 4.086 24 C -0.093 4.093 25 C -0.113 4.113 26 C 0.019 3.981 27 O -0.165 6.165 28 H 0.138 0.862 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.043 0.957 35 H 0.276 0.724 36 H 0.170 0.830 37 H 0.149 0.851 38 H 0.169 0.831 39 H 0.171 0.829 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.219 -7.462 -0.849 12.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.320 3.680 4 O -0.425 6.425 5 C -0.151 4.151 6 C -0.008 4.008 7 N -0.141 5.141 8 C -0.473 4.473 9 H 0.119 0.881 10 C -0.192 4.192 11 N -0.529 5.529 12 Si 0.800 3.200 13 H -0.184 1.184 14 H -0.207 1.207 15 H -0.179 1.179 16 C 0.318 3.682 17 O -0.495 6.495 18 C -0.053 4.053 19 C -0.176 4.176 20 C -0.154 4.154 21 C -0.096 4.096 22 C -0.146 4.146 23 C -0.103 4.103 24 C -0.093 4.093 25 C -0.170 4.170 26 C -0.029 4.029 27 O -0.065 6.065 28 H 0.156 0.844 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.187 0.813 37 H 0.167 0.833 38 H 0.186 0.814 39 H 0.188 0.812 40 H 0.088 0.912 41 H 0.121 0.879 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.397 -6.989 -0.895 11.745 hybrid contribution -0.670 0.481 0.451 0.940 sum 8.727 -6.508 -0.444 10.895 Atomic orbital electron populations 1.23589 0.74693 1.05894 1.02492 1.86502 1.25211 1.32265 1.83867 1.23695 0.91895 0.81328 0.71115 1.90642 1.67775 1.37436 1.46610 1.21598 0.87136 1.00299 1.06043 1.21436 0.81145 0.93843 1.04343 1.43467 1.05355 1.60055 1.05180 1.19731 1.13474 1.24952 0.89115 0.88074 1.26439 0.96470 0.93186 1.03141 1.69695 1.23391 1.26117 1.33680 0.85216 0.78982 0.79217 0.76561 1.18365 1.20696 1.17940 1.17653 0.84348 0.81351 0.84883 1.90684 1.67683 1.57801 1.33322 1.21989 0.91311 1.06682 0.85294 1.22790 0.90659 1.05172 0.98946 1.20144 0.94364 1.07949 0.92957 1.20673 0.89201 0.98464 1.01305 1.21184 0.99081 1.00711 0.93623 1.21318 0.96006 0.97840 0.95166 1.19238 0.88708 1.04600 0.96778 1.20793 1.03497 1.02853 0.89830 1.20521 0.84531 1.03397 0.94495 1.84572 1.14404 1.74817 1.32711 0.84372 0.92093 0.92069 0.87941 0.86487 0.86633 0.93816 0.91413 0.81281 0.83282 0.81373 0.81177 0.91171 0.87907 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.80 16 2 O -0.36 -11.48 10.56 -51.35 -0.54 -12.02 16 3 C 0.48 18.55 7.96 71.24 0.57 19.12 16 4 O -0.54 -23.99 15.73 21.97 0.35 -23.65 16 5 C -0.11 -4.59 6.11 29.85 0.18 -4.41 16 6 C 0.12 5.83 4.43 86.38 0.38 6.21 16 7 N -0.43 -22.24 2.51 -639.94 -1.60 -23.85 16 8 C -0.35 -17.72 7.67 84.12 0.64 -17.08 16 9 H 0.10 5.09 6.24 -2.91 -0.02 5.07 16 10 C 0.01 0.57 5.40 84.96 0.46 1.03 16 11 N -0.89 -48.19 10.85 21.68 0.24 -47.95 16 12 Si 0.98 39.48 29.56 68.60 2.03 41.51 16 13 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 14 H -0.28 -11.26 7.11 99.48 0.71 -10.56 16 15 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 16 C 0.53 27.66 7.60 86.48 0.66 28.32 16 17 O -0.61 -33.53 16.33 -4.39 -0.07 -33.60 16 18 C 0.00 -0.11 6.79 23.98 0.16 0.05 16 19 C -0.15 -6.18 10.81 23.81 0.26 -5.93 16 20 C -0.15 -5.35 6.38 -20.23 -0.13 -5.48 16 21 C -0.08 -1.97 10.06 22.25 0.22 -1.75 16 22 C -0.13 -2.50 9.98 22.04 0.22 -2.28 16 23 C -0.09 -1.78 9.67 22.31 0.22 -1.57 16 24 C -0.09 -2.71 5.89 -19.78 -0.12 -2.83 16 25 C -0.11 -2.94 10.02 71.24 0.71 -2.23 16 26 C 0.02 0.72 7.07 23.07 0.16 0.88 16 27 O -0.16 -7.46 7.48 -13.26 -0.10 -7.56 16 28 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 30 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 31 H 0.10 3.99 8.14 -2.39 -0.02 3.97 16 32 H 0.12 4.53 8.14 -2.38 -0.02 4.51 16 33 H 0.12 6.36 5.25 -2.39 -0.01 6.34 16 34 H 0.04 2.36 7.20 -2.39 -0.02 2.35 16 35 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 36 H 0.17 6.17 8.06 -2.91 -0.02 6.14 16 37 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 38 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 40 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.10 1.85 8.09 -2.39 -0.02 1.83 16 42 H 0.05 1.48 8.09 -2.39 -0.02 1.46 16 Total: -1.00 -70.89 364.96 7.15 -63.75 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 1.05 Total: 29.49 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 5.80 Total: 13.88 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -1.37 Total: -71.80 kcal Atomic # 8 Polarization: -76.46 SS G_CDS: -0.37 Total: -76.83 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -70.89 7.15 -63.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341080.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.958 kcal (2) G-P(sol) polarization free energy of solvation -70.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.62 seconds