Wall clock time and date at job start Tue Mar 31 2020 15:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00232 * 2 1 4 4 O 1.20830 * 119.99648 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00335 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47153 * 179.97438 * 5 3 2 7 7 N 1.46496 * 109.46995 * 180.02562 * 6 5 3 8 8 C 1.36956 * 120.00282 * 271.32742 * 7 6 5 9 9 H 1.08000 * 119.99348 * 43.05019 * 8 7 6 10 10 C 1.38977 * 120.00176 * 223.05276 * 8 7 6 11 11 N 1.31407 * 120.00068 * 353.52524 * 10 8 7 12 12 Si 1.86802 * 119.99792 * 173.52240 * 10 8 7 13 13 H 1.48497 * 109.46784 * 90.00336 * 12 10 8 14 14 H 1.48499 * 109.46892 * 209.99773 * 12 10 8 15 15 H 1.48498 * 109.47205 * 330.00227 * 12 10 8 16 16 C 1.34774 * 120.00297 * 91.33236 * 7 6 5 17 17 O 1.21679 * 120.00490 * 187.09191 * 16 7 6 18 18 C 1.46994 * 119.99614 * 7.08015 * 16 7 6 19 19 C 1.36135 * 127.14780 * 331.52808 * 18 16 7 20 20 O 1.33832 * 109.84120 * 179.97438 * 19 18 16 21 21 C 1.34911 * 111.35387 * 359.97438 * 20 19 18 22 22 C 1.40269 * 107.64128 * 359.71938 * 21 20 19 23 23 C 1.39068 * 120.28950 * 180.31482 * 22 21 20 24 24 C 1.37888 * 119.62879 * 0.17445 * 23 22 21 25 25 C 1.38636 * 120.19941 * 359.97438 * 24 23 22 26 26 C 1.37901 * 120.65653 * 359.59454 * 25 24 23 27 27 C 1.50692 * 120.01441 * 179.89381 * 26 25 24 28 28 H 1.09002 * 109.47191 * 299.99987 * 1 2 3 29 29 H 1.09002 * 109.46630 * 60.00238 * 1 2 3 30 30 H 1.08998 * 109.46716 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46909 * 60.00231 * 5 3 2 32 32 H 1.09000 * 109.46844 * 299.99985 * 5 3 2 33 33 H 1.09003 * 109.47012 * 60.00309 * 6 5 3 34 34 H 1.08999 * 109.47464 * 300.00504 * 6 5 3 35 35 H 0.97003 * 119.99831 * 184.51290 * 11 10 8 36 36 H 1.07999 * 125.07962 * 0.02562 * 19 18 16 37 37 H 1.07995 * 120.18613 * 180.19715 * 23 22 21 38 38 H 1.08000 * 119.90422 * 179.97438 * 24 23 22 39 39 H 1.08007 * 119.67515 * 180.02562 * 25 24 23 40 40 H 1.08999 * 109.47283 * 270.74353 * 27 26 25 41 41 H 1.09000 * 109.47234 * 30.75003 * 27 26 25 42 42 H 1.09005 * 109.47114 * 150.74700 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4631 2.8187 -0.0002 8 6 6.1485 2.8277 1.1855 9 1 5.8613 2.1551 1.9802 10 6 7.2133 3.7024 1.3660 11 7 7.6441 4.4295 0.3599 12 14 8.0319 3.8444 3.0391 13 1 9.1442 2.8647 3.1306 14 1 8.5671 5.2186 3.2132 15 1 7.0353 3.5627 4.1033 16 6 6.1347 2.8805 -1.1671 17 8 7.3496 2.8140 -1.1742 18 6 5.3993 3.0279 -2.4313 19 6 4.1355 2.6004 -2.7019 20 8 3.8089 2.9161 -3.9608 21 6 4.8183 3.5589 -4.5836 22 6 5.8752 3.6776 -3.6691 23 6 7.0564 4.3108 -4.0405 24 6 7.1827 4.8257 -5.3134 25 6 6.1385 4.7125 -6.2183 26 6 4.9662 4.0788 -5.8635 27 6 3.8395 3.9661 -6.8578 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9564 0.7806 -0.8892 32 1 3.9557 0.7809 0.8908 33 1 3.6101 3.2367 0.8894 34 1 3.6108 3.2356 -0.8906 35 1 8.4278 4.9910 0.4678 36 1 3.4922 2.0844 -2.0046 37 1 7.8703 4.3985 -3.3361 38 1 8.0979 5.3187 -5.6064 39 1 6.2468 5.1185 -7.2132 40 1 3.1925 4.8393 -6.7743 41 1 4.2491 3.9123 -7.8665 42 1 3.2619 3.0649 -6.6517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871348178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:37 Heat of formation + Delta-G solvation = -56.528284 kcal Electronic energy + Delta-G solvation = -28760.734353 eV Core-core repulsion = 24674.159574 eV Total energy + Delta-G solvation = -4086.574779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.10062 -40.42019 -38.28794 -37.69958 -36.50807 -34.57200 -33.31519 -32.37708 -30.91371 -30.36936 -29.14160 -27.65314 -26.63016 -25.19764 -23.91341 -22.55238 -21.98104 -21.42767 -20.52457 -18.87222 -17.64481 -17.54201 -16.96773 -16.52346 -16.31081 -15.88178 -15.81092 -15.40961 -14.97152 -14.36457 -14.22861 -13.86353 -13.70131 -13.60402 -13.33230 -13.15572 -13.07753 -12.70115 -12.29734 -12.22330 -12.12807 -11.87257 -11.63094 -11.49853 -11.41030 -11.23106 -11.01391 -10.86363 -10.78904 -10.60521 -10.55704 -10.40503 -10.22389 -9.32585 -8.92000 -8.24598 -8.13479 -7.62456 -7.26350 -5.98778 -3.99142 1.22926 1.69438 2.27085 2.48934 2.75427 3.11328 3.27486 3.31682 3.33809 4.01204 4.17295 4.58570 4.77693 4.83666 4.88801 5.03909 5.10084 5.11355 5.14029 5.18553 5.25422 5.33103 5.43119 5.43687 5.57496 5.65457 5.68869 5.71975 5.77469 5.86553 5.97308 6.02775 6.16037 6.29247 6.38058 6.55628 6.62198 6.66715 6.77214 6.92424 7.02374 7.51482 7.53322 7.79807 8.17020 8.97876 9.11082 9.52901 10.28923 10.92005 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.007573 B = 0.005892 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3696.514820 B = 4751.172038 C = 8161.384778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.362 6.362 3 C 0.461 3.539 4 O -0.505 6.505 5 C -0.144 4.144 6 C 0.100 3.900 7 N -0.451 5.451 8 C -0.332 4.332 9 H 0.084 0.916 10 C 0.043 3.957 11 N -0.805 5.805 12 Si 0.916 3.084 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.271 1.271 16 C 0.523 3.477 17 O -0.492 6.492 18 C -0.171 4.171 19 C -0.012 4.012 20 O -0.193 6.193 21 C 0.046 3.954 22 C -0.089 4.089 23 C -0.051 4.051 24 C -0.144 4.144 25 C -0.102 4.102 26 C -0.086 4.086 27 C -0.107 4.107 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.262 0.738 36 H 0.213 0.787 37 H 0.139 0.861 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.995 -4.115 -8.376 13.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.278 6.278 3 C 0.304 3.696 4 O -0.392 6.392 5 C -0.183 4.183 6 C -0.025 4.025 7 N -0.173 5.173 8 C -0.459 4.459 9 H 0.102 0.898 10 C -0.167 4.167 11 N -0.440 5.440 12 Si 0.743 3.257 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.196 1.196 16 C 0.311 3.689 17 O -0.366 6.366 18 C -0.176 4.176 19 C -0.078 4.078 20 O -0.094 6.094 21 C -0.001 4.001 22 C -0.091 4.091 23 C -0.069 4.069 24 C -0.162 4.162 25 C -0.120 4.120 26 C -0.086 4.086 27 C -0.164 4.164 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.137 0.863 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.228 0.772 37 H 0.156 0.844 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.691 -3.710 -8.556 13.449 hybrid contribution 0.221 0.148 1.061 1.094 sum -9.470 -3.563 -7.494 12.591 Atomic orbital electron populations 1.23238 0.76785 1.03425 1.02532 1.86545 1.23157 1.33886 1.84253 1.24025 0.92269 0.81207 0.72108 1.90681 1.67261 1.36181 1.45063 1.22230 0.86252 1.03110 1.06702 1.21731 0.85412 0.91373 1.03992 1.43120 1.01724 1.67316 1.05154 1.19077 1.15897 1.19646 0.91303 0.89788 1.25445 0.98467 0.95344 0.97493 1.70143 1.21589 1.23197 1.29052 0.86117 0.79403 0.77512 0.82649 1.20566 1.21074 1.19629 1.16795 0.87006 0.84300 0.80833 1.90634 1.12783 1.48355 1.84836 1.21869 0.94627 1.04149 0.96934 1.25035 0.96512 1.02789 0.83453 1.83780 1.38960 1.62488 1.24215 1.19429 0.87120 0.99257 0.94320 1.19582 0.95396 1.01558 0.92562 1.20771 0.96319 0.93919 0.95860 1.20992 0.99223 1.02394 0.93561 1.20708 0.92237 0.99317 0.99698 1.18649 0.97367 1.01899 0.90733 1.20671 0.96148 1.02423 0.97113 0.91941 0.91932 0.88347 0.87759 0.86277 0.89763 0.90512 0.92725 0.77156 0.84362 0.85617 0.85374 0.91393 0.91500 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.65 10.57 -39.25 -0.41 -5.07 16 3 C 0.46 6.80 7.61 36.01 0.27 7.07 16 4 O -0.50 -8.53 15.73 -18.75 -0.30 -8.82 16 5 C -0.14 -2.22 5.17 -27.88 -0.14 -2.37 16 6 C 0.10 1.93 4.17 -4.05 -0.02 1.92 16 7 N -0.45 -10.94 2.58 -116.18 -0.30 -11.24 16 8 C -0.33 -8.68 9.24 -14.99 -0.14 -8.82 16 9 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 10 C 0.04 1.18 5.10 -17.46 -0.09 1.09 16 11 N -0.81 -23.39 10.18 55.50 0.56 -22.83 16 12 Si 0.92 20.84 29.56 -169.99 -5.03 15.81 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 C 0.52 13.50 6.73 -12.71 -0.09 13.41 16 17 O -0.49 -14.54 14.16 5.21 0.07 -14.47 16 18 C -0.17 -3.80 5.87 -103.25 -0.61 -4.41 16 19 C -0.01 -0.22 9.39 29.98 0.28 0.06 16 20 O -0.19 -3.53 10.53 5.26 0.06 -3.47 16 21 C 0.05 0.85 7.05 -38.56 -0.27 0.58 16 22 C -0.09 -1.89 6.35 -104.97 -0.67 -2.55 16 23 C -0.05 -1.00 10.09 -39.40 -0.40 -1.40 16 24 C -0.14 -2.23 10.04 -39.56 -0.40 -2.62 16 25 C -0.10 -1.41 9.67 -39.56 -0.38 -1.80 16 26 C -0.09 -1.31 5.89 -104.49 -0.62 -1.92 16 27 C -0.11 -1.23 10.01 36.00 0.36 -0.87 16 28 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 29 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 1.52 6.81 -51.93 -0.35 1.16 16 32 H 0.12 1.77 8.14 -51.93 -0.42 1.35 16 33 H 0.08 1.65 8.01 -51.93 -0.42 1.23 16 34 H 0.08 1.47 4.57 -51.93 -0.24 1.23 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.21 3.44 3.42 -52.49 -0.18 3.26 16 37 H 0.14 2.97 8.06 -52.49 -0.42 2.55 16 38 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 39 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 42 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -33.98 357.56 -6.73 -40.72 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -4.95 Total: 5.22 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -1.83 Total: -1.24 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.27 Total: -34.06 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.58 Total: -31.83 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.98 -6.73 -40.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871348178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.812 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds