Wall clock time and date at job start Tue Mar 31 2020 15:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00232 * 2 1 4 4 O 1.20830 * 119.99648 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00335 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47153 * 179.97438 * 5 3 2 7 7 N 1.46496 * 109.46995 * 180.02562 * 6 5 3 8 8 C 1.36956 * 120.00282 * 271.32742 * 7 6 5 9 9 H 1.08000 * 119.99348 * 43.05019 * 8 7 6 10 10 C 1.38977 * 120.00176 * 223.05276 * 8 7 6 11 11 N 1.31407 * 120.00068 * 353.52524 * 10 8 7 12 12 Si 1.86802 * 119.99792 * 173.52240 * 10 8 7 13 13 H 1.48497 * 109.46784 * 90.00336 * 12 10 8 14 14 H 1.48499 * 109.46892 * 209.99773 * 12 10 8 15 15 H 1.48498 * 109.47205 * 330.00227 * 12 10 8 16 16 C 1.34774 * 120.00297 * 91.33236 * 7 6 5 17 17 O 1.21679 * 120.00490 * 187.09191 * 16 7 6 18 18 C 1.46994 * 119.99614 * 7.08015 * 16 7 6 19 19 C 1.36135 * 127.14780 * 331.52808 * 18 16 7 20 20 O 1.33832 * 109.84120 * 179.97438 * 19 18 16 21 21 C 1.34911 * 111.35387 * 359.97438 * 20 19 18 22 22 C 1.40269 * 107.64128 * 359.71938 * 21 20 19 23 23 C 1.39068 * 120.28950 * 180.31482 * 22 21 20 24 24 C 1.37888 * 119.62879 * 0.17445 * 23 22 21 25 25 C 1.38636 * 120.19941 * 359.97438 * 24 23 22 26 26 C 1.37901 * 120.65653 * 359.59454 * 25 24 23 27 27 C 1.50692 * 120.01441 * 179.89381 * 26 25 24 28 28 H 1.09002 * 109.47191 * 299.99987 * 1 2 3 29 29 H 1.09002 * 109.46630 * 60.00238 * 1 2 3 30 30 H 1.08998 * 109.46716 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46909 * 60.00231 * 5 3 2 32 32 H 1.09000 * 109.46844 * 299.99985 * 5 3 2 33 33 H 1.09003 * 109.47012 * 60.00309 * 6 5 3 34 34 H 1.08999 * 109.47464 * 300.00504 * 6 5 3 35 35 H 0.97003 * 119.99831 * 184.51290 * 11 10 8 36 36 H 1.07999 * 125.07962 * 0.02562 * 19 18 16 37 37 H 1.07995 * 120.18613 * 180.19715 * 23 22 21 38 38 H 1.08000 * 119.90422 * 179.97438 * 24 23 22 39 39 H 1.08007 * 119.67515 * 180.02562 * 25 24 23 40 40 H 1.08999 * 109.47283 * 270.74353 * 27 26 25 41 41 H 1.09000 * 109.47234 * 30.75003 * 27 26 25 42 42 H 1.09005 * 109.47114 * 150.74700 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4631 2.8187 -0.0002 8 6 6.1485 2.8277 1.1855 9 1 5.8613 2.1551 1.9802 10 6 7.2133 3.7024 1.3660 11 7 7.6441 4.4295 0.3599 12 14 8.0319 3.8444 3.0391 13 1 9.1442 2.8647 3.1306 14 1 8.5671 5.2186 3.2132 15 1 7.0353 3.5627 4.1033 16 6 6.1347 2.8805 -1.1671 17 8 7.3496 2.8140 -1.1742 18 6 5.3993 3.0279 -2.4313 19 6 4.1355 2.6004 -2.7019 20 8 3.8089 2.9161 -3.9608 21 6 4.8183 3.5589 -4.5836 22 6 5.8752 3.6776 -3.6691 23 6 7.0564 4.3108 -4.0405 24 6 7.1827 4.8257 -5.3134 25 6 6.1385 4.7125 -6.2183 26 6 4.9662 4.0788 -5.8635 27 6 3.8395 3.9661 -6.8578 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9564 0.7806 -0.8892 32 1 3.9557 0.7809 0.8908 33 1 3.6101 3.2367 0.8894 34 1 3.6108 3.2356 -0.8906 35 1 8.4278 4.9910 0.4678 36 1 3.4922 2.0844 -2.0046 37 1 7.8703 4.3985 -3.3361 38 1 8.0979 5.3187 -5.6064 39 1 6.2468 5.1185 -7.2132 40 1 3.1925 4.8393 -6.7743 41 1 4.2491 3.9123 -7.8665 42 1 3.2619 3.0649 -6.6517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871348178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:36 Heat of formation + Delta-G solvation = -77.090691 kcal Electronic energy + Delta-G solvation = -28761.626006 eV Core-core repulsion = 24674.159574 eV Total energy + Delta-G solvation = -4087.466431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.56582 -41.60490 -40.08237 -39.02095 -37.68181 -36.37626 -34.87884 -34.02713 -32.32247 -32.01094 -30.57700 -28.61836 -27.74651 -27.09843 -25.41419 -24.03665 -23.36188 -22.97405 -21.76125 -20.57025 -19.06216 -18.88899 -18.46373 -17.82096 -17.55493 -17.40490 -17.24347 -16.99716 -16.45691 -16.02397 -15.78291 -15.48471 -15.26351 -14.78780 -14.49595 -14.37773 -14.28963 -14.03791 -13.90323 -13.44529 -13.36595 -13.22106 -13.11026 -12.91651 -12.81611 -12.79462 -12.63876 -12.51571 -12.26003 -12.03809 -11.90052 -11.77648 -11.63162 -10.94820 -10.79555 -10.13273 -9.60382 -9.24794 -9.04961 -8.01772 -6.07036 -0.16580 0.34586 0.96432 1.08622 1.42399 1.46022 1.54883 1.65321 1.68284 2.31333 2.61353 2.81774 3.11424 3.22243 3.44211 3.64573 3.72106 3.87695 3.91668 4.00469 4.08677 4.26045 4.34851 4.35669 4.36969 4.39054 4.45490 4.52589 4.65198 4.72103 4.75334 4.84132 4.88079 4.97752 5.05770 5.31812 5.32400 5.36903 5.44091 5.47567 5.55603 5.65650 6.10961 6.15634 6.66029 6.97985 7.18002 7.56229 8.35435 8.89169 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.007573 B = 0.005892 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3696.514820 B = 4751.172038 C = 8161.384778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.361 6.361 3 C 0.474 3.526 4 O -0.528 6.528 5 C -0.135 4.135 6 C 0.103 3.897 7 N -0.462 5.462 8 C -0.346 4.346 9 H 0.099 0.901 10 C -0.015 4.015 11 N -0.849 5.849 12 Si 0.986 3.014 13 H -0.283 1.283 14 H -0.289 1.289 15 H -0.249 1.249 16 C 0.517 3.483 17 O -0.547 6.547 18 C -0.220 4.220 19 C 0.024 3.976 20 O -0.185 6.185 21 C 0.028 3.972 22 C -0.124 4.124 23 C -0.094 4.094 24 C -0.124 4.124 25 C -0.091 4.091 26 C -0.077 4.077 27 C -0.105 4.105 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.133 0.867 31 H 0.115 0.885 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.254 0.746 36 H 0.234 0.766 37 H 0.098 0.902 38 H 0.156 0.844 39 H 0.181 0.819 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.387 -4.706 -10.316 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.317 3.683 4 O -0.418 6.418 5 C -0.174 4.174 6 C -0.021 4.021 7 N -0.184 5.184 8 C -0.474 4.474 9 H 0.117 0.883 10 C -0.221 4.221 11 N -0.485 5.485 12 Si 0.810 3.190 13 H -0.209 1.209 14 H -0.215 1.215 15 H -0.173 1.173 16 C 0.306 3.694 17 O -0.425 6.425 18 C -0.225 4.225 19 C -0.043 4.043 20 O -0.086 6.086 21 C -0.018 4.018 22 C -0.125 4.125 23 C -0.113 4.113 24 C -0.142 4.142 25 C -0.108 4.108 26 C -0.078 4.078 27 C -0.162 4.162 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.151 0.849 31 H 0.133 0.867 32 H 0.146 0.854 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.250 0.750 37 H 0.117 0.883 38 H 0.174 0.826 39 H 0.198 0.802 40 H 0.101 0.899 41 H 0.118 0.882 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.150 -4.330 -10.487 16.624 hybrid contribution 0.851 0.290 1.524 1.769 sum -11.299 -4.040 -8.963 14.978 Atomic orbital electron populations 1.23611 0.74498 1.05844 1.02786 1.86517 1.25265 1.32307 1.83598 1.23585 0.91607 0.81499 0.71592 1.90683 1.67621 1.37081 1.46365 1.21956 0.87519 1.00165 1.07738 1.21722 0.82420 0.94162 1.03751 1.43309 1.03686 1.66905 1.04464 1.19542 1.16213 1.19585 0.92044 0.88317 1.26427 0.99504 0.95170 1.00978 1.70361 1.22086 1.24673 1.31355 0.85056 0.78462 0.76883 0.78614 1.20889 1.21460 1.17282 1.17316 0.86782 0.83037 0.82218 1.90574 1.15127 1.50771 1.86042 1.21685 0.96513 1.07837 0.96504 1.25225 0.95029 1.00323 0.83717 1.83781 1.38822 1.62290 1.23692 1.19839 0.86251 1.00425 0.95314 1.19849 0.96941 1.02776 0.92975 1.20682 0.95597 0.97409 0.97564 1.21373 1.00972 1.00155 0.91723 1.21289 0.90591 0.97700 1.01220 1.19313 0.98944 0.99685 0.89833 1.20786 0.94929 1.02979 0.97461 0.91832 0.91619 0.84902 0.86737 0.85388 0.90202 0.90514 0.93646 0.75028 0.88326 0.82629 0.80194 0.89945 0.88196 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.61 16 2 O -0.36 -8.44 10.57 -51.39 -0.54 -8.98 16 3 C 0.47 13.26 7.61 71.24 0.54 13.80 16 4 O -0.53 -17.23 15.73 21.95 0.35 -16.88 16 5 C -0.14 -4.10 5.17 29.85 0.15 -3.94 16 6 C 0.10 4.08 4.17 86.38 0.36 4.44 16 7 N -0.46 -23.43 2.58 -639.71 -1.65 -25.08 16 8 C -0.35 -18.75 9.24 84.07 0.78 -17.97 16 9 H 0.10 4.88 7.84 -2.91 -0.02 4.86 16 10 C -0.01 -0.83 5.10 84.93 0.43 -0.40 16 11 N -0.85 -52.72 10.18 21.67 0.22 -52.50 16 12 Si 0.99 44.37 29.56 68.60 2.03 46.40 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 15 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 16 C 0.52 28.50 6.73 86.54 0.58 29.08 16 17 O -0.55 -35.06 14.16 -4.28 -0.06 -35.12 16 18 C -0.22 -10.36 5.87 -18.98 -0.11 -10.47 16 19 C 0.02 0.90 9.39 67.33 0.63 1.53 16 20 O -0.19 -6.62 10.53 -4.09 -0.04 -6.66 16 21 C 0.03 1.03 7.05 22.93 0.16 1.19 16 22 C -0.12 -5.49 6.35 -20.09 -0.13 -5.62 16 23 C -0.09 -3.95 10.09 22.39 0.23 -3.73 16 24 C -0.12 -3.73 10.04 22.28 0.22 -3.51 16 25 C -0.09 -2.18 9.67 22.28 0.22 -1.97 16 26 C -0.08 -2.12 5.89 -19.78 -0.12 -2.24 16 27 C -0.11 -1.94 10.01 71.23 0.71 -1.23 16 28 H 0.06 1.04 8.13 -2.39 -0.02 1.03 16 29 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 30 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.11 3.26 6.81 -2.39 -0.02 3.24 16 32 H 0.13 3.69 8.14 -2.39 -0.02 3.67 16 33 H 0.08 3.18 8.01 -2.39 -0.02 3.17 16 34 H 0.08 3.00 4.57 -2.39 -0.01 2.99 16 35 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.23 7.46 3.42 -2.91 -0.01 7.45 16 37 H 0.10 4.81 8.06 -2.91 -0.02 4.78 16 38 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 39 H 0.18 2.55 8.06 -2.91 -0.02 2.52 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 41 H 0.10 1.23 8.09 -2.39 -0.02 1.21 16 42 H 0.06 1.23 8.09 -2.38 -0.02 1.21 16 Total: -1.00 -81.46 357.56 7.23 -74.23 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 1.06 Total: 24.02 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.86 Total: 0.59 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -1.43 Total: -77.59 kcal Atomic # 8 Polarization: -67.35 SS G_CDS: -0.30 Total: -67.65 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -81.46 7.23 -74.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871348178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.859 kcal (2) G-P(sol) polarization free energy of solvation -81.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds