Wall clock time and date at job start Tue Mar 31 2020 17:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47431 * 2 1 4 4 C 1.50704 * 109.47193 * 239.99952 * 2 1 3 5 5 H 1.07988 * 120.00429 * 239.99770 * 4 2 1 6 6 C 1.37880 * 119.99314 * 60.00248 * 4 2 1 7 7 N 1.31510 * 120.00812 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99756 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47255 * 59.99247 * 8 6 4 10 10 H 1.48493 * 109.47401 * 179.97438 * 8 6 4 11 11 H 1.48513 * 109.47027 * 300.00000 * 8 6 4 12 12 N 1.46501 * 109.47266 * 120.00518 * 2 1 3 13 13 C 1.46500 * 120.00015 * 59.99804 * 12 2 1 14 14 C 1.34775 * 119.99852 * 240.00234 * 12 2 1 15 15 O 1.21287 * 120.00384 * 355.09476 * 14 12 2 16 16 C 1.50697 * 119.99936 * 175.09609 * 14 12 2 17 17 H 1.08997 * 109.47212 * 312.99458 * 16 14 12 18 18 O 1.42906 * 109.47233 * 192.99733 * 16 14 12 19 19 C 1.50702 * 109.47394 * 73.00023 * 16 14 12 20 20 C 1.38242 * 119.99927 * 75.82207 * 19 16 14 21 21 C 1.38232 * 119.99697 * 179.76710 * 20 19 16 22 22 C 1.38238 * 119.99897 * 0.51135 * 21 20 19 23 23 C 1.50703 * 119.99929 * 179.72366 * 22 21 20 24 24 F 1.39897 * 109.46903 * 270.02283 * 23 22 21 25 25 F 1.39901 * 109.46975 * 30.01647 * 23 22 21 26 26 F 1.39894 * 109.47429 * 150.02046 * 23 22 21 27 27 C 1.38234 * 120.00169 * 359.74414 * 22 21 20 28 28 C 1.38230 * 120.00038 * 256.10020 * 19 16 14 29 29 H 1.09000 * 109.47171 * 59.99933 * 1 2 3 30 30 H 1.08997 * 109.47165 * 299.99609 * 1 2 3 31 31 H 1.09005 * 109.47059 * 179.97438 * 1 2 3 32 32 H 0.96992 * 120.00931 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.46975 * 95.20677 * 13 12 2 34 34 H 1.09001 * 109.46823 * 215.20162 * 13 12 2 35 35 H 1.08995 * 109.47353 * 335.20253 * 13 12 2 36 36 H 0.96700 * 114.00303 * 300.00453 * 18 16 14 37 37 H 1.08001 * 119.99962 * 0.02562 * 20 19 16 38 38 H 1.07996 * 119.99808 * 180.23240 * 21 20 19 39 39 H 1.07994 * 120.00030 * 179.97438 * 27 22 21 40 40 H 1.08005 * 119.99689 * 359.97438 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.8281 -2.5196 -4.0083 10 1 1.8269 -0.4197 -5.2204 11 1 3.8075 -1.1187 -4.0078 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4278 14 6 2.7931 -0.0358 2.0833 15 8 3.1597 1.0964 1.8488 16 6 3.2042 -0.7101 3.3668 17 1 2.3336 -1.1778 3.8264 18 8 3.7510 0.2611 4.2612 19 6 4.2424 -1.7618 3.0716 20 6 5.5448 -1.3892 2.7962 21 6 6.4982 -2.3542 2.5302 22 6 6.1467 -3.6912 2.5292 23 6 7.1847 -4.7429 2.2331 24 9 7.2176 -4.9911 0.8567 25 9 8.4397 -4.2914 2.6555 26 9 6.8605 -5.9223 2.9120 27 6 4.8432 -4.0634 2.7994 28 6 3.8910 -3.0987 3.0706 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7081 1.1610 -3.4843 33 1 2.4611 -2.7358 1.0530 34 1 1.5333 -2.2631 2.4965 35 1 0.7355 -2.3246 0.9066 36 1 4.5303 0.7183 3.9168 37 1 5.8184 -0.3444 2.7930 38 1 7.5165 -2.0634 2.3188 39 1 4.5686 -5.1079 2.7982 40 1 2.8725 -3.3895 3.2817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874357711.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:51 Heat of formation + Delta-G solvation = -204.105065 kcal Electronic energy + Delta-G solvation = -29174.079034 eV Core-core repulsion = 24539.248106 eV Total energy + Delta-G solvation = -4634.830928 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.32178 -47.85285 -47.76535 -40.49427 -38.82689 -36.59866 -35.31897 -33.23554 -32.31984 -31.35951 -29.73123 -27.80654 -26.36134 -25.32293 -24.97319 -23.15876 -22.07954 -21.02438 -18.96833 -18.69361 -18.62312 -18.54483 -17.45309 -16.92717 -16.36449 -16.12013 -15.39477 -15.14252 -14.78121 -14.65017 -14.51734 -14.37427 -14.25704 -14.04487 -13.94423 -13.89059 -13.70250 -13.50835 -13.34144 -12.86667 -12.66214 -12.59736 -12.06272 -11.92855 -11.67486 -11.58662 -11.29894 -11.11319 -10.88376 -10.82315 -10.76458 -10.32939 -10.22877 -9.57388 -9.28232 -9.22853 -8.77657 -8.47875 -7.74889 -6.12713 -4.21088 0.64005 1.05824 2.48382 3.00981 3.24309 3.25284 3.30076 3.32255 3.53860 3.69623 3.84151 4.25633 4.33546 4.40751 4.46514 4.52594 4.60484 4.89227 5.00778 5.09574 5.18838 5.31322 5.36822 5.55779 5.66678 5.85102 5.93002 5.94152 6.16256 6.18454 6.48977 6.67088 6.72386 6.95485 7.27034 7.36921 7.47510 7.64007 7.92725 8.10721 8.36956 8.69812 8.87099 9.45527 10.92558 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.011285 B = 0.004220 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.668669 B = 6634.095808 C = 8196.803230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.582 5.582 13 C 0.080 3.920 14 C 0.481 3.519 15 O -0.541 6.541 16 C 0.127 3.873 17 H 0.130 0.870 18 O -0.533 6.533 19 C -0.075 4.075 20 C -0.103 4.103 21 C -0.065 4.065 22 C -0.184 4.184 23 C 0.509 3.491 24 F -0.175 7.175 25 F -0.179 7.179 26 F -0.179 7.179 27 C -0.068 4.068 28 C -0.106 4.106 29 H 0.095 0.905 30 H 0.012 0.988 31 H 0.031 0.969 32 H 0.264 0.736 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.383 0.617 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.667 -10.886 12.624 18.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.313 5.313 13 C -0.064 4.064 14 C 0.266 3.734 15 O -0.420 6.420 16 C 0.064 3.936 17 H 0.147 0.853 18 O -0.339 6.339 19 C -0.076 4.076 20 C -0.121 4.121 21 C -0.083 4.083 22 C -0.185 4.185 23 C 0.455 3.545 24 F -0.156 7.156 25 F -0.160 7.160 26 F -0.160 7.160 27 C -0.086 4.086 28 C -0.124 4.124 29 H 0.114 0.886 30 H 0.031 0.969 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.232 0.768 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.295 -10.381 12.695 17.948 hybrid contribution 0.902 -0.655 -1.447 1.827 sum 8.197 -11.036 11.248 17.762 Atomic orbital electron populations 1.22114 0.98031 0.99478 1.01023 1.19004 0.90920 0.94500 0.79859 0.91867 1.21234 1.32010 1.13038 0.90184 0.92351 1.24875 0.94878 0.94934 0.98946 1.69852 1.36180 1.22538 1.23967 0.86570 0.79313 0.79608 0.82008 1.20201 1.21104 1.20218 1.48262 1.48282 1.11471 1.23325 1.21857 1.02043 0.83294 0.99229 1.20903 0.80059 0.87094 0.85386 1.90681 1.55521 1.18791 1.76976 1.20866 0.95004 0.87175 0.90560 0.85289 1.86587 1.49913 1.54872 1.42492 1.20532 0.95047 0.94933 0.97068 1.20923 0.92258 1.00118 0.98811 1.20867 1.00413 0.90833 0.96206 1.19967 0.94569 0.93679 1.10307 1.18306 0.80747 0.80934 0.74494 1.93249 1.96545 1.94733 1.31083 1.93184 1.43945 1.88932 1.89926 1.93180 1.92500 1.50230 1.80077 1.20885 0.91023 1.00598 0.96134 1.21095 0.99977 0.91457 0.99844 0.88639 0.96886 0.95001 0.92556 0.92808 0.93153 0.90204 0.76768 0.84636 0.84491 0.84394 0.84119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.96 37.16 0.33 -3.07 16 2 C 0.26 6.32 2.63 -69.08 -0.18 6.14 16 3 H 0.06 1.82 6.91 -51.93 -0.36 1.46 16 4 C -0.53 -13.84 8.37 -34.44 -0.29 -14.13 16 5 H 0.06 1.52 7.64 -52.49 -0.40 1.12 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 8 Si 0.90 20.84 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.58 -11.60 2.75 -175.26 -0.48 -12.08 16 13 C 0.08 1.21 7.95 59.85 0.48 1.69 16 14 C 0.48 9.25 6.95 -10.99 -0.08 9.17 16 15 O -0.54 -12.56 15.64 -14.02 -0.22 -12.78 16 16 C 0.13 1.78 2.92 -29.04 -0.08 1.70 16 17 H 0.13 1.53 6.69 -51.93 -0.35 1.18 16 18 O -0.53 -7.54 12.95 -54.80 -0.71 -8.25 16 19 C -0.07 -0.94 4.57 -104.62 -0.48 -1.41 16 20 C -0.10 -1.26 9.26 -39.58 -0.37 -1.62 16 21 C -0.07 -0.74 9.40 -39.58 -0.37 -1.11 16 22 C -0.18 -2.09 5.45 -104.62 -0.57 -2.66 16 23 C 0.51 5.70 3.36 36.01 0.12 5.82 16 24 F -0.17 -2.19 17.30 2.25 0.04 -2.15 16 25 F -0.18 -1.98 16.46 2.25 0.04 -1.95 16 26 F -0.18 -1.93 16.46 2.25 0.04 -1.89 16 27 C -0.07 -0.71 9.40 -39.58 -0.37 -1.08 16 28 C -0.11 -1.12 7.43 -39.59 -0.29 -1.41 16 29 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.03 0.67 6.67 -51.93 -0.35 0.32 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.05 0.80 7.03 -51.93 -0.36 0.44 16 34 H 0.05 0.56 4.85 -51.93 -0.25 0.31 16 35 H 0.08 1.25 6.44 -51.93 -0.33 0.92 16 36 H 0.38 4.68 7.29 45.56 0.33 5.01 16 37 H 0.14 1.51 6.96 -52.49 -0.37 1.15 16 38 H 0.14 1.32 7.60 -52.49 -0.40 0.92 16 39 H 0.14 1.14 7.60 -52.49 -0.40 0.74 16 40 H 0.14 1.13 6.44 -52.48 -0.34 0.79 16 LS Contribution 340.34 15.07 5.13 5.13 Total: -1.00 -31.33 340.34 -6.26 -37.59 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -3.45 Total: 4.87 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -2.25 Total: -0.31 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.14 Total: -36.08 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.93 Total: -21.03 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.11 Total: -5.98 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.33 -6.26 -37.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874357711.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.519 kcal (2) G-P(sol) polarization free energy of solvation -31.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds