Wall clock time and date at job start Tue Mar 31 2020 17:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.47039 * 2 1 4 4 C 1.50701 * 109.46907 * 119.99197 * 2 1 3 5 5 H 1.08008 * 119.99667 * 120.00079 * 4 2 1 6 6 C 1.37871 * 120.00297 * 300.00303 * 4 2 1 7 7 N 1.31516 * 120.00230 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00061 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47019 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47265 * 120.00093 * 8 6 4 11 11 H 1.48505 * 109.47361 * 240.00327 * 8 6 4 12 12 N 1.46492 * 109.47428 * 239.99769 * 2 1 3 13 13 C 1.46502 * 120.00051 * 299.99925 * 12 2 1 14 14 C 1.34775 * 120.00194 * 120.00071 * 12 2 1 15 15 O 1.21279 * 120.00001 * 359.97438 * 14 12 2 16 16 C 1.50702 * 120.00132 * 180.02562 * 14 12 2 17 17 H 1.09001 * 109.47350 * 54.99526 * 16 14 12 18 18 O 1.42903 * 109.47214 * 175.00008 * 16 14 12 19 19 C 1.50706 * 109.46824 * 294.99950 * 16 14 12 20 20 C 1.38234 * 120.00196 * 100.00236 * 19 16 14 21 21 C 1.38235 * 119.99814 * 179.97438 * 20 19 16 22 22 C 1.38230 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.50696 * 120.00309 * 179.97438 * 22 21 20 24 24 F 1.39894 * 109.47316 * 89.99999 * 23 22 21 25 25 F 1.39901 * 109.47549 * 210.00124 * 23 22 21 26 26 F 1.39900 * 109.47190 * 330.00019 * 23 22 21 27 27 C 1.38243 * 120.00092 * 359.97438 * 22 21 20 28 28 C 1.38234 * 119.99618 * 359.97438 * 27 22 21 29 29 H 1.08996 * 109.46586 * 60.00701 * 1 2 3 30 30 H 1.09000 * 109.46354 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47074 * 300.00060 * 1 2 3 32 32 H 0.96995 * 119.99897 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.46981 * 270.00495 * 13 12 2 34 34 H 1.09003 * 109.47239 * 29.99956 * 13 12 2 35 35 H 1.08993 * 109.47168 * 150.00045 * 13 12 2 36 36 H 0.96697 * 114.00023 * 59.99766 * 18 16 14 37 37 H 1.08000 * 119.99516 * 0.24808 * 20 19 16 38 38 H 1.08000 * 119.99297 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.00235 * 179.97438 * 27 22 21 40 40 H 1.08005 * 119.99804 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 1 2.6533 -1.5884 1.1316 6 6 1.6992 -0.2391 2.4827 7 7 0.9435 0.8305 2.6034 8 14 2.3213 -1.1200 4.0081 9 1 3.1465 -2.2867 3.6040 10 1 3.1465 -0.1870 4.8166 11 1 1.1660 -1.5864 4.8162 12 7 2.0184 -0.6906 -1.1961 13 6 1.6646 -2.0932 -1.4279 14 6 2.7933 -0.0357 -2.0832 15 8 3.0859 1.1256 -1.8916 16 6 3.2953 -0.7460 -3.3139 17 1 2.4510 -1.1652 -3.8613 18 8 3.9910 0.1818 -4.1490 19 6 4.2308 -1.8553 -2.9072 20 6 3.7771 -3.1602 -2.8613 21 6 4.6354 -4.1777 -2.4887 22 6 5.9476 -3.8904 -2.1626 23 6 6.8832 -4.9995 -1.7559 24 9 7.5226 -5.5099 -2.8906 25 9 7.8404 -4.4997 -0.8664 26 9 6.1551 -6.0188 -1.1328 27 6 6.4017 -2.5855 -2.2095 28 6 5.5437 -1.5681 -2.5831 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.7089 1.1616 3.4843 33 1 2.4159 -2.7377 -0.9714 34 1 0.6906 -2.3003 -0.9845 35 1 1.6240 -2.2853 -2.5000 36 1 4.7562 0.5947 -3.7258 37 1 2.7531 -3.3852 -3.1207 38 1 4.2807 -5.1971 -2.4524 39 1 7.4268 -2.3609 -1.9543 40 1 5.8983 -0.5486 -2.6194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874357712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:55 Heat of formation + Delta-G solvation = -200.329975 kcal Electronic energy + Delta-G solvation = -29307.479753 eV Core-core repulsion = 24672.812525 eV Total energy + Delta-G solvation = -4634.667228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.30353 -47.80873 -47.77531 -40.53879 -38.80103 -36.61126 -35.33426 -33.29557 -32.27179 -31.36949 -29.70144 -27.81792 -26.39979 -25.32392 -24.96956 -23.11166 -22.07099 -21.03898 -19.00791 -18.68380 -18.60408 -18.51860 -17.43561 -16.94804 -16.35049 -16.11351 -15.38556 -15.16511 -14.75970 -14.65577 -14.48724 -14.44477 -14.22320 -14.05176 -13.92138 -13.85977 -13.68149 -13.49554 -13.32132 -12.87521 -12.66409 -12.61283 -12.01982 -11.95474 -11.67284 -11.58653 -11.23890 -11.11456 -10.87110 -10.82974 -10.73514 -10.30830 -10.23709 -9.56432 -9.27299 -9.19471 -8.76142 -8.48504 -7.74167 -6.13591 -4.21834 0.65898 1.07513 2.50201 3.02029 3.21896 3.25863 3.30667 3.33695 3.55703 3.70147 3.86355 4.26486 4.32998 4.38951 4.45421 4.53089 4.61282 4.88794 5.02402 5.10621 5.18226 5.32051 5.36921 5.53530 5.67762 5.85465 5.94137 5.96397 6.16007 6.19043 6.50192 6.67340 6.72534 6.95709 7.26463 7.36982 7.47514 7.63858 7.92861 8.10036 8.36909 8.69824 8.87313 9.45026 10.91764 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.010835 B = 0.004489 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.484124 B = 6235.459447 C = 7894.503535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.256 3.744 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.581 5.581 13 C 0.077 3.923 14 C 0.479 3.521 15 O -0.540 6.540 16 C 0.128 3.872 17 H 0.130 0.870 18 O -0.532 6.532 19 C -0.076 4.076 20 C -0.107 4.107 21 C -0.069 4.069 22 C -0.184 4.184 23 C 0.509 3.491 24 F -0.179 7.179 25 F -0.177 7.177 26 F -0.177 7.177 27 C -0.065 4.065 28 C -0.104 4.104 29 H 0.012 0.988 30 H 0.031 0.969 31 H 0.095 0.905 32 H 0.263 0.737 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.382 0.618 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.556 -11.346 -11.928 18.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.156 3.844 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.313 5.313 13 C -0.067 4.067 14 C 0.264 3.736 15 O -0.419 6.419 16 C 0.065 3.935 17 H 0.148 0.852 18 O -0.338 6.338 19 C -0.077 4.077 20 C -0.125 4.125 21 C -0.087 4.087 22 C -0.185 4.185 23 C 0.455 3.545 24 F -0.160 7.160 25 F -0.158 7.158 26 F -0.158 7.158 27 C -0.083 4.083 28 C -0.121 4.121 29 H 0.031 0.969 30 H 0.050 0.950 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.232 0.768 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.181 -10.808 -12.072 17.723 hybrid contribution 0.831 -0.667 1.544 1.876 sum 8.013 -11.475 -10.528 17.513 Atomic orbital electron populations 1.22103 0.98056 0.99449 1.01020 1.19011 0.90998 0.94524 0.79830 0.91840 1.21306 1.31878 1.12995 0.90147 0.92253 1.24879 0.94897 0.94939 0.98970 1.69881 1.36317 1.22556 1.23744 0.86464 0.78673 0.79659 0.82780 1.19768 1.20871 1.20856 1.48266 1.48259 1.11485 1.23258 1.22034 1.02155 0.83460 0.99024 1.20918 0.80252 0.87577 0.84812 1.90685 1.58488 1.16623 1.76091 1.20841 0.93992 0.87025 0.91684 0.85222 1.86585 1.47090 1.59467 1.40621 1.20535 0.94963 0.95020 0.97137 1.21194 1.00275 0.91327 0.99695 1.20882 0.91381 1.00401 0.96026 1.19959 0.95363 0.93504 1.09666 1.18305 0.79504 0.81874 0.74792 1.93216 1.83162 1.88375 1.51263 1.93199 1.66001 1.87270 1.69344 1.93196 1.77286 1.62183 1.83129 1.20856 1.00518 0.90788 0.96157 1.20879 0.92892 0.99680 0.98698 0.96873 0.95018 0.88670 0.92674 0.92541 0.90526 0.92848 0.76837 0.83878 0.84392 0.84519 0.84748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.95 37.16 0.33 -3.07 16 2 C 0.26 6.30 2.63 -69.08 -0.18 6.11 16 3 H 0.06 1.83 6.90 -51.93 -0.36 1.47 16 4 C -0.52 -13.76 8.37 -34.44 -0.29 -14.05 16 5 H 0.06 1.55 7.65 -52.48 -0.40 1.15 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.61 11.32 55.43 0.63 -23.98 16 8 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.58 -11.55 2.75 -175.26 -0.48 -12.03 16 13 C 0.08 1.17 7.75 59.85 0.46 1.63 16 14 C 0.48 9.22 7.07 -10.99 -0.08 9.14 16 15 O -0.54 -12.60 15.65 -14.30 -0.22 -12.82 16 16 C 0.13 1.79 2.96 -29.03 -0.09 1.70 16 17 H 0.13 1.53 7.00 -51.93 -0.36 1.16 16 18 O -0.53 -7.52 12.84 -55.09 -0.71 -8.23 16 19 C -0.08 -0.95 4.52 -104.62 -0.47 -1.42 16 20 C -0.11 -1.14 6.94 -39.58 -0.27 -1.42 16 21 C -0.07 -0.73 9.40 -39.59 -0.37 -1.10 16 22 C -0.18 -2.11 5.45 -104.63 -0.57 -2.68 16 23 C 0.51 5.80 3.36 36.00 0.12 5.92 16 24 F -0.18 -2.00 17.30 2.25 0.04 -1.96 16 25 F -0.18 -2.13 16.46 2.25 0.04 -2.10 16 26 F -0.18 -2.07 16.46 2.25 0.04 -2.04 16 27 C -0.07 -0.75 9.40 -39.58 -0.37 -1.12 16 28 C -0.10 -1.26 9.32 -39.58 -0.37 -1.62 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.03 0.66 6.66 -51.93 -0.35 0.32 16 31 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.06 0.85 6.81 -51.93 -0.35 0.50 16 34 H 0.08 1.18 6.43 -51.93 -0.33 0.85 16 35 H 0.05 0.59 4.32 -51.93 -0.22 0.37 16 36 H 0.38 4.65 7.25 45.56 0.33 4.98 16 37 H 0.14 1.17 5.96 -52.49 -0.31 0.86 16 38 H 0.14 1.17 7.60 -52.49 -0.40 0.77 16 39 H 0.14 1.33 7.60 -52.49 -0.40 0.93 16 40 H 0.13 1.46 6.78 -52.48 -0.36 1.10 16 LS Contribution 338.56 15.07 5.10 5.10 Total: -1.00 -31.49 338.56 -6.22 -37.72 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -3.39 Total: 4.86 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -2.24 Total: -0.32 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.15 Total: -36.01 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.93 Total: -21.05 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.11 Total: -6.09 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.49 -6.22 -37.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874357712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.613 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds