Wall clock time and date at job start Tue Mar 31 2020 17:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46614 * 2 1 4 4 C 1.50702 * 109.46933 * 119.99535 * 2 1 3 5 5 H 1.08006 * 119.99647 * 120.00311 * 4 2 1 6 6 C 1.37878 * 120.00259 * 300.00010 * 4 2 1 7 7 N 1.31510 * 119.99920 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99850 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.46865 * 89.99917 * 8 6 4 10 10 H 1.48501 * 109.46842 * 209.99966 * 8 6 4 11 11 H 1.48494 * 109.47074 * 329.99816 * 8 6 4 12 12 N 1.46495 * 109.47166 * 239.99990 * 2 1 3 13 13 C 1.46501 * 119.99779 * 299.99573 * 12 2 1 14 14 C 1.34774 * 120.00294 * 120.00106 * 12 2 1 15 15 O 1.21284 * 119.99760 * 5.58502 * 14 12 2 16 16 C 1.50696 * 120.00006 * 185.59010 * 14 12 2 17 17 H 1.09000 * 109.47061 * 310.19981 * 16 14 12 18 18 O 1.42906 * 109.47147 * 190.20392 * 16 14 12 19 19 C 1.50694 * 109.47654 * 70.20392 * 16 14 12 20 20 C 1.38235 * 120.00356 * 79.26149 * 19 16 14 21 21 C 1.38231 * 120.00134 * 179.77048 * 20 19 16 22 22 C 1.38238 * 120.00179 * 0.50659 * 21 20 19 23 23 C 1.50694 * 119.99911 * 179.72729 * 22 21 20 24 24 F 1.39902 * 109.47025 * 270.01906 * 23 22 21 25 25 F 1.39895 * 109.47624 * 30.02167 * 23 22 21 26 26 F 1.39905 * 109.46925 * 150.02533 * 23 22 21 27 27 C 1.38236 * 119.99828 * 359.74801 * 22 21 20 28 28 C 1.38241 * 120.00038 * 0.02562 * 27 22 21 29 29 H 1.09003 * 109.47410 * 60.00140 * 1 2 3 30 30 H 1.09008 * 109.47048 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47464 * 300.00107 * 1 2 3 32 32 H 0.97003 * 119.99987 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47260 * 85.17322 * 13 12 2 34 34 H 1.08997 * 109.47328 * 205.17156 * 13 12 2 35 35 H 1.09000 * 109.47593 * 325.17820 * 13 12 2 36 36 H 0.96698 * 113.99616 * 300.00107 * 18 16 14 37 37 H 1.08001 * 119.99698 * 0.02562 * 20 19 16 38 38 H 1.07999 * 119.99903 * 180.23308 * 21 20 19 39 39 H 1.07995 * 120.00067 * 179.97438 * 27 22 21 40 40 H 1.08002 * 120.00103 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1380 -0.8588 3.5566 8 14 0.6247 1.2792 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9758 1.9953 3.9067 11 1 0.8470 2.1765 1.4920 12 7 2.0183 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.1700 1.0919 -1.8431 16 6 3.1914 -0.7043 -3.3738 17 1 3.5901 -1.6962 -3.1611 18 8 4.1905 0.0803 -4.0283 19 6 1.9850 -0.8290 -4.2681 20 6 1.5460 0.2632 -4.9930 21 6 0.4422 0.1475 -5.8170 22 6 -0.2290 -1.0576 -5.9082 23 6 -1.4360 -1.1819 -6.8019 24 9 -2.5885 -0.8619 -6.0761 25 9 -1.3077 -0.3046 -7.8839 26 9 -1.5326 -2.4950 -7.2750 27 6 0.2067 -2.1483 -5.1793 28 6 1.3134 -2.0339 -4.3588 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.9034 -0.5276 4.4376 33 1 0.6953 -2.1463 -1.9237 34 1 2.4213 -2.5594 -2.0587 35 1 1.6135 -2.6176 -0.4736 36 1 3.9043 0.9775 -4.2482 37 1 2.0680 1.2057 -4.9187 38 1 0.1016 0.9997 -6.3862 39 1 -0.3179 -3.0896 -5.2502 40 1 1.6536 -2.8860 -3.7890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874357713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:57 Heat of formation + Delta-G solvation = -217.089259 kcal Electronic energy + Delta-G solvation = -29145.925264 eV Core-core repulsion = 24510.531299 eV Total energy + Delta-G solvation = -4635.393965 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.18779 -48.70188 -48.65793 -41.71886 -40.07944 -37.98376 -36.95887 -34.92977 -33.58182 -32.35564 -32.05428 -29.06605 -27.75269 -27.18019 -26.11898 -23.99869 -23.46356 -22.37389 -20.38832 -19.60678 -19.50187 -19.42892 -19.00625 -18.57730 -18.14126 -17.59591 -16.80221 -16.41157 -16.04105 -15.88422 -15.52842 -15.42965 -15.16557 -15.11775 -14.98736 -14.87136 -14.81540 -14.76402 -14.50821 -14.37499 -14.15428 -13.88293 -13.87653 -13.68132 -13.22216 -13.04443 -13.01342 -12.73235 -12.65388 -12.24785 -12.10536 -11.84827 -11.60602 -11.37462 -10.81949 -10.77430 -10.10740 -10.01235 -9.45461 -8.36150 -6.40566 -0.25838 0.22520 1.24908 1.34631 1.42217 1.53459 1.63170 2.08908 2.26145 2.37361 2.68086 2.99337 2.99665 3.30233 3.35857 3.40727 3.58588 3.67008 3.84087 4.07743 4.25089 4.31558 4.43502 4.44922 4.54242 4.57419 4.57803 4.74721 4.86757 4.95590 5.04154 5.06148 5.10296 5.25729 5.31643 5.46940 5.65011 5.65557 6.15293 6.39835 6.61353 6.66275 7.13375 7.28360 8.79678 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.015790 B = 0.003523 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.832174 B = 7946.408579 C = 8701.454975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.231 3.769 3 H 0.030 0.970 4 C -0.526 4.526 5 H 0.049 0.951 6 C 0.025 3.975 7 N -0.938 5.938 8 Si 0.939 3.061 9 H -0.254 1.254 10 H -0.297 1.297 11 H -0.263 1.263 12 N -0.583 5.583 13 C 0.069 3.931 14 C 0.475 3.525 15 O -0.588 6.588 16 C 0.144 3.856 17 H 0.154 0.846 18 O -0.539 6.539 19 C -0.088 4.088 20 C -0.115 4.115 21 C -0.070 4.070 22 C -0.189 4.189 23 C 0.512 3.488 24 F -0.182 7.182 25 F -0.179 7.179 26 F -0.176 7.176 27 C -0.066 4.066 28 C -0.103 4.103 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.268 0.732 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.390 0.610 37 H 0.140 0.860 38 H 0.150 0.850 39 H 0.161 0.839 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.056 -3.797 -23.156 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.128 3.872 3 H 0.048 0.952 4 C -0.564 4.564 5 H 0.067 0.933 6 C -0.174 4.174 7 N -0.577 5.577 8 Si 0.766 3.234 9 H -0.180 1.180 10 H -0.225 1.225 11 H -0.188 1.188 12 N -0.314 5.314 13 C -0.073 4.073 14 C 0.263 3.737 15 O -0.469 6.469 16 C 0.081 3.919 17 H 0.171 0.829 18 O -0.346 6.346 19 C -0.089 4.089 20 C -0.133 4.133 21 C -0.088 4.088 22 C -0.190 4.190 23 C 0.458 3.542 24 F -0.164 7.164 25 F -0.161 7.161 26 F -0.157 7.157 27 C -0.084 4.084 28 C -0.120 4.120 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.241 0.759 37 H 0.158 0.842 38 H 0.168 0.832 39 H 0.178 0.822 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.560 -3.779 -22.803 24.026 hybrid contribution -0.779 1.265 0.692 1.639 sum -7.339 -2.514 -22.111 23.432 Atomic orbital electron populations 1.22286 0.96502 1.02373 0.99763 1.18963 0.91731 0.93396 0.83150 0.95235 1.21360 1.31732 1.13229 0.90125 0.93297 1.25611 0.97109 0.99310 0.95405 1.69992 1.47024 1.42111 0.98607 0.86018 0.79951 0.80354 0.77073 1.17951 1.22457 1.18782 1.47904 1.48514 1.13438 1.21548 1.22245 1.01737 0.80199 1.03137 1.21936 0.78234 0.86729 0.86831 1.90650 1.55994 1.21499 1.78804 1.20778 0.87836 0.96930 0.86363 0.82855 1.86596 1.39668 1.29997 1.78336 1.20415 0.96274 0.95495 0.96692 1.21061 0.96828 0.99022 0.96395 1.21021 0.94026 0.96690 0.97059 1.20121 0.97546 0.98104 1.03263 1.18293 0.83375 0.73629 0.78881 1.93232 1.52910 1.92616 1.77619 1.93185 1.95973 1.69557 1.57367 1.93193 1.96586 1.36727 1.89244 1.21191 0.95740 0.98283 0.93199 1.21415 0.94795 0.97591 0.98229 0.92728 0.90975 0.94129 0.92268 0.90226 0.88654 0.91513 0.75940 0.84211 0.83222 0.82156 0.81482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.97 8.67 71.98 0.62 -5.35 16 2 C 0.23 10.62 2.22 44.25 0.10 10.72 16 3 H 0.03 1.56 5.97 -2.39 -0.01 1.55 16 4 C -0.53 -28.63 8.61 25.60 0.22 -28.41 16 5 H 0.05 2.89 7.50 -2.91 -0.02 2.87 16 6 C 0.02 1.39 5.45 84.66 0.46 1.85 16 7 N -0.94 -56.61 13.96 21.45 0.30 -56.31 16 8 Si 0.94 44.29 24.37 68.60 1.67 45.96 16 9 H -0.25 -10.99 6.87 99.48 0.68 -10.31 16 10 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 11 H -0.26 -12.25 6.53 99.48 0.65 -11.60 16 12 N -0.58 -21.50 2.75 -826.81 -2.28 -23.78 16 13 C 0.07 1.81 7.70 127.77 0.98 2.80 16 14 C 0.47 16.99 6.97 87.66 0.61 17.61 16 15 O -0.59 -26.34 15.65 15.79 0.25 -26.09 16 16 C 0.14 3.52 2.94 29.10 0.09 3.60 16 17 H 0.15 3.05 6.52 -2.39 -0.02 3.03 16 18 O -0.54 -13.90 12.89 -130.14 -1.68 -15.58 16 19 C -0.09 -1.72 4.70 -19.87 -0.09 -1.82 16 20 C -0.12 -2.18 9.31 22.27 0.21 -1.97 16 21 C -0.07 -1.20 9.40 22.27 0.21 -0.99 16 22 C -0.19 -3.21 5.45 -19.87 -0.11 -3.32 16 23 C 0.51 8.91 3.36 71.23 0.24 9.15 16 24 F -0.18 -3.60 17.30 44.97 0.78 -2.82 16 25 F -0.18 -3.21 16.46 44.97 0.74 -2.47 16 26 F -0.18 -3.00 16.46 44.97 0.74 -2.26 16 27 C -0.07 -0.97 9.40 22.27 0.21 -0.76 16 28 C -0.10 -1.55 7.62 22.27 0.17 -1.38 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 2.59 7.67 -2.38 -0.02 2.57 16 31 H 0.04 1.68 3.27 -2.39 -0.01 1.67 16 32 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 33 H 0.08 1.67 7.05 -2.39 -0.02 1.66 16 34 H 0.10 1.76 4.77 -2.39 -0.01 1.75 16 35 H 0.07 2.10 6.97 -2.39 -0.02 2.08 16 36 H 0.39 8.52 7.21 -74.06 -0.53 7.99 16 37 H 0.14 2.40 6.82 -2.91 -0.02 2.38 16 38 H 0.15 2.08 7.60 -2.91 -0.02 2.06 16 39 H 0.16 1.63 7.60 -2.91 -0.02 1.60 16 40 H 0.17 1.62 6.21 -2.91 -0.02 1.60 16 Total: -1.00 -72.68 333.78 4.95 -67.73 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.51 Total: 13.87 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 3.92 Total: 1.74 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -1.98 Total: -80.08 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -1.43 Total: -41.67 kcal Atomic # 9 Polarization: -9.81 SS G_CDS: 2.26 Total: -7.55 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.67 Total: 45.96 kcal Total: -72.68 4.95 -67.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874357713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.359 kcal (2) G-P(sol) polarization free energy of solvation -72.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds