Wall clock time and date at job start Tue Mar 31 2020 17:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46756 * 2 1 4 4 C 1.50700 * 109.46912 * 240.00172 * 2 1 3 5 5 H 1.07994 * 119.99798 * 239.99601 * 4 2 1 6 6 C 1.37879 * 119.99930 * 60.00310 * 4 2 1 7 7 N 1.31518 * 120.00312 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99879 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47417 * 59.99492 * 8 6 4 10 10 H 1.48498 * 109.47218 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47045 * 299.99329 * 8 6 4 12 12 N 1.46492 * 109.47354 * 120.00013 * 2 1 3 13 13 C 1.46502 * 120.00051 * 60.00049 * 12 2 1 14 14 C 1.34775 * 120.00194 * 240.00196 * 12 2 1 15 15 O 1.21279 * 120.00001 * 359.97438 * 14 12 2 16 16 C 1.50702 * 120.00132 * 180.02562 * 14 12 2 17 17 H 1.09001 * 109.47350 * 54.99526 * 16 14 12 18 18 O 1.42903 * 109.47214 * 175.00008 * 16 14 12 19 19 C 1.50706 * 109.46824 * 294.99950 * 16 14 12 20 20 C 1.38234 * 120.00196 * 100.00236 * 19 16 14 21 21 C 1.38235 * 119.99814 * 179.97438 * 20 19 16 22 22 C 1.38230 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.50696 * 120.00309 * 179.97438 * 22 21 20 24 24 F 1.39894 * 109.47316 * 89.99999 * 23 22 21 25 25 F 1.39901 * 109.47549 * 210.00124 * 23 22 21 26 26 F 1.39900 * 109.47190 * 330.00019 * 23 22 21 27 27 C 1.38243 * 120.00092 * 359.97438 * 22 21 20 28 28 C 1.38234 * 119.99618 * 359.97438 * 27 22 21 29 29 H 1.08994 * 109.47297 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47245 * 299.99728 * 1 2 3 31 31 H 1.08999 * 109.47177 * 59.99785 * 1 2 3 32 32 H 0.96994 * 119.99878 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.46981 * 270.00495 * 13 12 2 34 34 H 1.09003 * 109.47239 * 29.99956 * 13 12 2 35 35 H 1.08993 * 109.47168 * 150.00045 * 13 12 2 36 36 H 0.96697 * 114.00023 * 59.99766 * 18 16 14 37 37 H 1.08000 * 119.99516 * 0.24808 * 20 19 16 38 38 H 1.08000 * 119.99297 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.00235 * 179.97438 * 27 22 21 40 40 H 1.08005 * 119.99804 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 1.8257 -2.5201 -4.0078 10 1 1.8259 -0.4204 -5.2205 11 1 3.8062 -1.1207 -4.0083 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7932 -0.0356 2.0833 15 8 3.0865 1.1254 1.8911 16 6 3.2961 -0.7462 3.3134 17 1 3.8268 -1.6515 3.0187 18 8 4.1833 0.1139 4.0311 19 6 2.1293 -1.1123 4.1942 20 6 1.6280 -2.4004 4.1775 21 6 0.5581 -2.7362 4.9858 22 6 -0.0102 -1.7841 5.8113 23 6 -1.1769 -2.1501 6.6921 24 9 -0.7039 -2.6016 7.9289 25 9 -1.9866 -1.0256 6.8848 26 9 -1.9233 -3.1629 6.0804 27 6 0.4918 -0.4962 5.8289 28 6 1.5624 -0.1606 5.0213 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 0.7082 1.1610 -3.4844 33 1 0.7376 -2.1444 1.9992 34 1 1.5295 -2.5969 0.4707 35 1 2.4629 -2.5818 1.9862 36 1 3.7773 0.9408 4.3252 37 1 2.0751 -3.1454 3.5361 38 1 0.1662 -3.7425 4.9724 39 1 0.0476 0.2478 6.4735 40 1 1.9543 0.8457 5.0348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874357714.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:03 Heat of formation + Delta-G solvation = -201.053804 kcal Electronic energy + Delta-G solvation = -29112.374431 eV Core-core repulsion = 24477.675815 eV Total energy + Delta-G solvation = -4634.698616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.36949 -47.87892 -47.83737 -40.57717 -38.83155 -36.61982 -35.33515 -33.31371 -32.29920 -31.43499 -29.71841 -27.85285 -26.37732 -25.30595 -25.02670 -23.16751 -22.10664 -21.08990 -18.99920 -18.73997 -18.65964 -18.58524 -17.44324 -16.97201 -16.54511 -15.94859 -15.41377 -15.22491 -14.77351 -14.71146 -14.53103 -14.47419 -14.29131 -14.11217 -13.98824 -13.89467 -13.74833 -13.55089 -13.29248 -12.99929 -12.57881 -12.56469 -12.07096 -11.87238 -11.76826 -11.61458 -11.29155 -11.08720 -10.92451 -10.80915 -10.77998 -10.31822 -10.23656 -9.60287 -9.32791 -9.25312 -8.77337 -8.48289 -7.74808 -6.13639 -4.22473 0.58962 1.00168 2.43480 3.01456 3.19126 3.23926 3.29644 3.31074 3.49040 3.69090 3.79639 4.20001 4.32719 4.37901 4.41457 4.48278 4.54901 4.87301 4.97908 5.07740 5.18067 5.28678 5.31204 5.53640 5.62525 5.81250 5.87284 5.91938 6.13993 6.22065 6.43425 6.66780 6.73948 6.96704 7.25787 7.38263 7.47443 7.63072 7.92085 8.10318 8.36521 8.69157 8.86391 9.44080 10.91650 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.003320 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.744989 B = 8431.408143 C = 9176.299879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.581 5.581 13 C 0.074 3.926 14 C 0.480 3.520 15 O -0.540 6.540 16 C 0.127 3.873 17 H 0.132 0.868 18 O -0.531 6.531 19 C -0.075 4.075 20 C -0.107 4.107 21 C -0.069 4.069 22 C -0.184 4.184 23 C 0.509 3.491 24 F -0.178 7.178 25 F -0.177 7.177 26 F -0.177 7.177 27 C -0.066 4.066 28 C -0.106 4.106 29 H 0.030 0.970 30 H 0.010 0.990 31 H 0.094 0.906 32 H 0.265 0.735 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.381 0.619 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 -7.812 17.977 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.312 5.312 13 C -0.070 4.070 14 C 0.265 3.735 15 O -0.419 6.419 16 C 0.064 3.936 17 H 0.149 0.851 18 O -0.336 6.336 19 C -0.076 4.076 20 C -0.125 4.125 21 C -0.087 4.087 22 C -0.186 4.186 23 C 0.455 3.545 24 F -0.160 7.160 25 F -0.158 7.158 26 F -0.158 7.158 27 C -0.084 4.084 28 C -0.124 4.124 29 H 0.049 0.951 30 H 0.029 0.971 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.230 0.770 37 H 0.162 0.838 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.058 -7.555 17.615 19.277 hybrid contribution -0.453 -0.218 -0.686 0.850 sum -2.511 -7.772 16.929 18.797 Atomic orbital electron populations 1.22071 0.97989 0.99462 1.00821 1.18992 0.90971 0.94521 0.79776 0.91882 1.21247 1.32164 1.13174 0.90241 0.92223 1.24890 0.94836 0.94941 0.98996 1.69864 1.36056 1.22507 1.23997 0.86538 0.79268 0.79559 0.81922 1.20194 1.21128 1.20188 1.48270 1.47936 1.11625 1.23397 1.22071 0.98711 0.83363 1.02831 1.20908 0.79996 0.87762 0.84850 1.90685 1.58004 1.16748 1.76419 1.20860 0.89071 0.94708 0.88992 0.85097 1.86605 1.38891 1.33842 1.74279 1.20581 0.96739 0.94328 0.95974 1.21236 0.96515 0.96063 0.98676 1.20901 0.95052 0.99053 0.93686 1.19965 0.98963 0.97216 1.02437 1.18304 0.82780 0.74511 0.78879 1.93221 1.88307 1.89385 1.45044 1.93196 1.75217 1.52004 1.95433 1.93196 1.78510 1.61249 1.82844 1.20860 0.95169 0.94502 0.97881 1.20895 0.95813 0.99738 0.95931 0.95119 0.97089 0.88757 0.92533 0.93167 0.89736 0.92703 0.76956 0.83764 0.84346 0.84506 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.97 37.16 0.33 -3.04 16 2 C 0.26 6.34 2.64 -69.09 -0.18 6.15 16 3 H 0.06 1.82 6.90 -51.93 -0.36 1.46 16 4 C -0.53 -13.84 7.99 -34.44 -0.28 -14.11 16 5 H 0.06 1.52 7.33 -52.49 -0.38 1.13 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.57 11.32 55.43 0.63 -23.94 16 8 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.58 -11.56 2.75 -175.27 -0.48 -12.04 16 13 C 0.07 1.12 7.50 59.85 0.45 1.57 16 14 C 0.48 9.24 7.07 -10.99 -0.08 9.17 16 15 O -0.54 -12.61 15.65 -14.30 -0.22 -12.84 16 16 C 0.13 1.78 2.96 -29.03 -0.09 1.69 16 17 H 0.13 1.61 7.00 -51.93 -0.36 1.24 16 18 O -0.53 -7.54 12.84 -55.09 -0.71 -8.25 16 19 C -0.08 -0.89 4.52 -104.62 -0.47 -1.37 16 20 C -0.11 -1.08 6.94 -39.58 -0.27 -1.35 16 21 C -0.07 -0.67 9.40 -39.59 -0.37 -1.04 16 22 C -0.18 -1.93 5.45 -104.63 -0.57 -2.50 16 23 C 0.51 5.29 3.36 36.00 0.12 5.41 16 24 F -0.18 -1.86 17.30 2.25 0.04 -1.83 16 25 F -0.18 -1.93 16.46 2.25 0.04 -1.89 16 26 F -0.18 -1.89 16.46 2.25 0.04 -1.85 16 27 C -0.07 -0.68 9.40 -39.58 -0.37 -1.06 16 28 C -0.11 -1.18 9.32 -39.58 -0.37 -1.55 16 29 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.05 0.69 6.81 -51.93 -0.35 0.34 16 34 H 0.08 1.39 7.02 -51.93 -0.36 1.02 16 35 H 0.05 0.63 4.32 -51.93 -0.22 0.41 16 36 H 0.38 4.55 7.25 45.56 0.33 4.88 16 37 H 0.14 1.15 5.96 -52.49 -0.31 0.83 16 38 H 0.14 1.06 7.60 -52.49 -0.40 0.66 16 39 H 0.14 1.17 7.60 -52.49 -0.40 0.77 16 40 H 0.13 1.33 6.78 -52.48 -0.36 0.97 16 LS Contribution 339.24 15.07 5.11 5.11 Total: -1.00 -31.31 339.24 -6.28 -37.59 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -3.46 Total: 4.79 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -2.24 Total: -0.37 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.15 Total: -35.99 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.93 Total: -21.09 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.11 Total: -5.57 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.31 -6.28 -37.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874357714.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.467 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds