Wall clock time and date at job start Tue Mar 31 2020 16:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 110.38967 * 2 1 4 4 C 1.54572 * 110.43875 * 237.44719 * 2 1 3 5 5 C 1.54489 * 102.14294 * 268.10669 * 4 2 1 6 6 C 1.53001 * 110.46053 * 225.77252 * 5 4 2 7 7 N 1.46499 * 110.36802 * 103.49514 * 5 4 2 8 8 S 1.65605 * 120.00096 * 155.30689 * 7 5 4 9 9 O 1.42100 * 104.27746 * 170.46047 * 8 7 5 10 10 O 1.42096 * 104.27657 * 298.32132 * 8 7 5 11 11 C 1.81403 * 104.44835 * 54.39241 * 8 7 5 12 12 C 1.52995 * 109.46984 * 169.27781 * 11 8 7 13 13 C 1.50706 * 115.55100 * 55.25091 * 12 11 8 14 14 H 1.08000 * 119.99601 * 271.66162 * 13 12 11 15 15 C 1.37872 * 120.00243 * 91.66412 * 13 12 11 16 16 N 1.31515 * 120.00150 * 3.85741 * 15 13 12 17 17 Si 1.86803 * 120.00109 * 183.85600 * 15 13 12 18 18 H 1.48506 * 109.46805 * 59.99967 * 17 15 13 19 19 H 1.48500 * 109.47087 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47214 * 300.00324 * 17 15 13 21 21 C 1.52998 * 117.50019 * 269.57327 * 12 11 8 22 22 C 1.53002 * 117.49883 * 200.91559 * 12 11 8 23 23 C 1.51332 * 104.82693 * 344.65730 * 5 4 2 24 24 O 1.20819 * 125.09467 * 177.68889 * 23 5 4 25 25 O 1.34063 * 109.80820 * 357.68267 * 23 5 4 26 26 H 1.09002 * 109.47388 * 299.03000 * 1 2 3 27 27 H 1.08996 * 109.47186 * 59.03284 * 1 2 3 28 28 H 1.09002 * 109.47262 * 179.03113 * 1 2 3 29 29 H 1.08993 * 109.46926 * 180.96530 * 3 2 1 30 30 H 1.08994 * 109.47206 * 300.96990 * 3 2 1 31 31 H 1.09003 * 109.46882 * 60.97096 * 3 2 1 32 32 H 1.08997 * 110.86313 * 149.94699 * 4 2 1 33 33 H 1.08997 * 110.86717 * 26.26724 * 4 2 1 34 34 H 1.08997 * 109.47207 * 298.39869 * 6 5 4 35 35 H 1.09003 * 109.47380 * 58.39814 * 6 5 4 36 36 H 1.09003 * 109.47099 * 178.39753 * 6 5 4 37 37 H 0.96994 * 119.99902 * 335.03226 * 7 5 4 38 38 H 1.09005 * 109.47067 * 289.28021 * 11 8 7 39 39 H 1.08998 * 109.47626 * 49.27492 * 11 8 7 40 40 H 0.96998 * 120.00061 * 185.00345 * 16 15 13 41 41 H 1.09005 * 117.49679 * 0.02562 * 21 12 11 42 42 H 1.08997 * 117.49596 * 145.01846 * 21 12 11 43 43 H 1.09002 * 117.50274 * 214.98016 * 22 12 11 44 44 H 1.09004 * 117.50103 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0631 1.4341 0.0000 4 6 2.0698 -0.7794 -1.2209 5 6 2.2301 -2.2062 -0.6506 6 6 3.5824 -2.7956 -1.0565 7 7 1.1396 -3.0667 -1.1159 8 16 1.3535 -4.7072 -1.1905 9 8 0.0542 -5.2184 -1.4548 10 8 2.4124 -4.8805 -2.1221 11 6 1.8921 -5.1698 0.4788 12 6 1.8684 -6.6932 0.6184 13 6 2.6681 -7.4526 -0.4086 14 1 2.2111 -7.7405 -1.3439 15 6 3.9830 -7.7799 -0.1544 16 7 4.5172 -7.4966 1.0136 17 14 5.0060 -8.6256 -1.4688 18 1 5.0782 -7.7598 -2.6732 19 1 6.3765 -8.8669 -0.9504 20 1 4.3767 -9.9219 -1.8280 21 6 0.5753 -7.3362 1.1237 22 6 1.8047 -7.2719 2.0333 23 6 2.1603 -2.0331 0.8512 24 8 2.2068 -2.9322 1.6569 25 8 2.0393 -0.7326 1.1535 26 1 -0.3634 0.4987 0.8986 27 1 -0.3633 0.5288 -0.8811 28 1 -0.3634 -1.0275 -0.0174 29 1 3.1528 1.4167 -0.0173 30 1 1.6940 1.9589 -0.8811 31 1 1.7222 1.9484 0.8986 32 1 3.0315 -0.3795 -1.5424 33 1 1.3496 -0.7668 -2.0389 34 1 3.6370 -2.8654 -2.1429 35 1 4.3833 -2.1517 -0.6931 36 1 3.6904 -3.7898 -0.6227 37 1 0.2909 -2.6759 -1.3765 38 1 2.9054 -4.8051 0.6477 39 1 1.2196 -4.7270 1.2134 40 1 5.4607 -7.6602 1.1678 41 1 -0.2587 -6.6739 1.3562 42 1 0.3031 -8.3086 0.7134 43 1 2.3409 -8.2022 2.2212 44 1 1.7802 -6.5674 2.8647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882223713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:18 Heat of formation + Delta-G solvation = -121.485832 kcal Electronic energy + Delta-G solvation = -29109.680289 eV Core-core repulsion = 25155.732691 eV Total energy + Delta-G solvation = -3953.947598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.61169 -37.91590 -36.64361 -36.55692 -35.87902 -35.05474 -33.61511 -31.94819 -30.47451 -28.31906 -27.89262 -27.12692 -25.38461 -24.12111 -21.75512 -21.02022 -20.36241 -19.48956 -18.53823 -17.54133 -16.99442 -16.78196 -16.36502 -16.06664 -15.22614 -15.10263 -14.90545 -14.67199 -14.29059 -14.04493 -13.61122 -13.54945 -13.21702 -12.96130 -12.73811 -12.68203 -12.50329 -12.32523 -12.16536 -11.98972 -11.75736 -11.64842 -11.46577 -11.24723 -11.16523 -11.00089 -10.85194 -10.81575 -10.73245 -10.54780 -10.46678 -10.25757 -9.88429 -9.62707 -9.19506 -8.99132 -8.38660 -7.97454 -6.06407 -4.20880 1.03034 1.94220 2.97638 3.30450 3.36811 3.38671 3.47446 3.69965 3.89264 4.17774 4.30245 4.43089 4.46789 4.55096 4.76910 4.99019 5.11442 5.14521 5.22965 5.24732 5.30186 5.35147 5.36257 5.45153 5.45499 5.65548 5.73312 5.76710 5.84102 6.02586 6.08599 6.32016 6.46296 6.54141 6.63277 6.79815 6.86471 6.98592 7.16348 7.34028 7.49371 7.63328 7.83594 8.28211 8.85207 9.51657 10.99658 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017753 B = 0.004730 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.793626 B = 5918.051775 C = 6089.482152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.100 3.900 3 C -0.142 4.142 4 C -0.146 4.146 5 C 0.126 3.874 6 C -0.175 4.175 7 N -1.113 6.113 8 S 2.599 3.401 9 O -0.971 6.971 10 O -0.947 6.947 11 C -0.539 4.539 12 C 0.036 3.964 13 C -0.523 4.523 14 H 0.065 0.935 15 C 0.086 3.914 16 N -0.869 5.869 17 Si 0.885 3.115 18 H -0.267 1.267 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.209 4.209 22 C -0.125 4.125 23 C 0.463 3.537 24 O -0.421 6.421 25 O -0.336 6.336 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.412 0.588 38 H 0.133 0.867 39 H 0.109 0.891 40 H 0.263 0.737 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.833 19.330 -2.933 20.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.063 3.937 3 C -0.199 4.199 4 C -0.185 4.185 5 C 0.034 3.966 6 C -0.233 4.233 7 N -0.870 5.870 8 S 2.698 3.302 9 O -0.961 6.961 10 O -0.936 6.936 11 C -0.673 4.673 12 C 0.033 3.967 13 C -0.560 4.560 14 H 0.083 0.917 15 C -0.120 4.120 16 N -0.504 5.504 17 Si 0.712 3.288 18 H -0.192 1.192 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.246 4.246 22 C -0.164 4.164 23 C 0.298 3.702 24 O -0.301 6.301 25 O -0.253 6.253 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.245 0.755 38 H 0.151 0.849 39 H 0.128 0.872 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.572 18.348 -2.964 19.140 hybrid contribution 0.374 -0.002 -0.053 0.377 sum -4.199 18.346 -3.016 19.061 Atomic orbital electron populations 1.22312 0.92730 1.03686 1.03953 1.23118 0.94709 0.93154 0.82673 1.21867 1.02349 0.92185 1.03513 1.23422 1.04694 0.92319 0.98050 1.21341 0.90767 0.93268 0.91204 1.22531 0.92046 1.03051 1.05624 1.56233 1.21174 1.26915 1.82668 1.05534 0.74535 0.71002 0.79164 1.93497 1.40193 1.76930 1.85493 1.93546 1.57166 1.83179 1.59728 1.30121 1.11564 1.07115 1.18465 1.18308 0.95753 0.85741 0.96851 1.20498 0.96457 1.37510 1.01583 0.91690 1.24932 0.97729 0.94405 0.94915 1.70030 1.12552 1.46760 1.21042 0.86737 0.79099 0.80332 0.82649 1.19158 1.21110 1.19906 1.23172 0.91623 1.02218 1.07621 1.22460 0.98645 1.02473 0.92862 1.23668 0.72930 0.81943 0.91635 1.90852 1.42440 1.39753 1.57058 1.87098 1.77026 1.20796 1.40358 0.90741 0.89853 0.91549 0.91039 0.89952 0.91025 0.87559 0.87454 0.88027 0.90210 0.89415 0.75476 0.84859 0.87231 0.92707 0.91379 0.89756 0.88929 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 8.77 37.16 0.33 -0.90 16 2 C 0.10 0.85 1.24 -89.79 -0.11 0.74 16 3 C -0.14 -0.81 8.92 37.16 0.33 -0.48 16 4 C -0.15 -1.24 5.49 -25.12 -0.14 -1.37 16 5 C 0.13 1.69 1.00 -131.88 -0.13 1.55 16 6 C -0.17 -2.58 7.03 37.16 0.26 -2.32 16 7 N -1.11 -16.46 5.41 0.49 0.00 -16.46 16 8 S 2.60 54.10 4.41 -107.50 -0.47 53.63 16 9 O -0.97 -22.21 18.08 -57.54 -1.04 -23.25 16 10 O -0.95 -21.85 14.79 -57.54 -0.85 -22.70 16 11 C -0.54 -12.19 3.78 37.16 0.14 -12.04 16 12 C 0.04 0.92 1.66 -155.66 -0.26 0.66 16 13 C -0.52 -14.70 7.85 -34.44 -0.27 -14.97 16 14 H 0.06 1.86 7.82 -52.49 -0.41 1.45 16 15 C 0.09 2.39 5.41 -17.82 -0.10 2.30 16 16 N -0.87 -24.58 12.10 55.43 0.67 -23.91 16 17 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.21 -4.91 9.93 -26.70 -0.27 -5.18 16 22 C -0.13 -3.09 8.93 -26.69 -0.24 -3.33 16 23 C 0.46 7.08 7.27 36.32 0.26 7.35 16 24 O -0.42 -8.02 13.40 -18.40 -0.25 -8.27 16 25 O -0.34 -4.32 10.48 -38.47 -0.40 -4.72 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.56 7.45 -51.93 -0.39 0.17 16 29 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 0.70 7.60 -51.93 -0.39 0.30 16 33 H 0.11 0.70 7.66 -51.93 -0.40 0.30 16 34 H 0.10 1.45 7.51 -51.93 -0.39 1.06 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 1.62 4.53 -51.93 -0.24 1.38 16 37 H 0.41 4.81 8.00 -34.47 -0.28 4.53 16 38 H 0.13 3.12 5.35 -51.92 -0.28 2.84 16 39 H 0.11 2.31 6.56 -51.93 -0.34 1.97 16 40 H 0.26 7.10 8.32 -40.82 -0.34 6.76 16 41 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 42 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 43 H 0.09 2.42 7.80 -51.93 -0.40 2.01 16 44 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 358.67 15.07 5.41 5.41 Total: -1.00 -34.92 358.67 -8.60 -43.52 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.45 Total: 8.02 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: -0.19 Total: -27.99 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.67 Total: -40.36 kcal Atomic # 8 Polarization: -56.40 SS G_CDS: -2.54 Total: -58.94 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 54.10 SS G_CDS: -0.47 Total: 53.63 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.92 -8.60 -43.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882223713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.963 kcal (2) G-P(sol) polarization free energy of solvation -34.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds