Wall clock time and date at job start Tue Mar 31 2020 16:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 110.38967 * 2 1 4 4 C 1.54572 * 110.43875 * 237.44719 * 2 1 3 5 5 C 1.54489 * 102.14294 * 268.10669 * 4 2 1 6 6 C 1.53001 * 110.46053 * 225.77252 * 5 4 2 7 7 N 1.46499 * 110.36802 * 103.49514 * 5 4 2 8 8 S 1.65605 * 120.00096 * 155.30689 * 7 5 4 9 9 O 1.42100 * 104.27746 * 170.46047 * 8 7 5 10 10 O 1.42096 * 104.27657 * 298.32132 * 8 7 5 11 11 C 1.81403 * 104.44835 * 54.39241 * 8 7 5 12 12 C 1.52995 * 109.46984 * 169.27781 * 11 8 7 13 13 C 1.50706 * 115.55100 * 55.25091 * 12 11 8 14 14 H 1.08000 * 119.99601 * 271.66162 * 13 12 11 15 15 C 1.37872 * 120.00243 * 91.66412 * 13 12 11 16 16 N 1.31515 * 120.00150 * 3.85741 * 15 13 12 17 17 Si 1.86803 * 120.00109 * 183.85600 * 15 13 12 18 18 H 1.48506 * 109.46805 * 59.99967 * 17 15 13 19 19 H 1.48500 * 109.47087 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47214 * 300.00324 * 17 15 13 21 21 C 1.52998 * 117.50019 * 269.57327 * 12 11 8 22 22 C 1.53002 * 117.49883 * 200.91559 * 12 11 8 23 23 C 1.51332 * 104.82693 * 344.65730 * 5 4 2 24 24 O 1.20819 * 125.09467 * 177.68889 * 23 5 4 25 25 O 1.34063 * 109.80820 * 357.68267 * 23 5 4 26 26 H 1.09002 * 109.47388 * 299.03000 * 1 2 3 27 27 H 1.08996 * 109.47186 * 59.03284 * 1 2 3 28 28 H 1.09002 * 109.47262 * 179.03113 * 1 2 3 29 29 H 1.08993 * 109.46926 * 180.96530 * 3 2 1 30 30 H 1.08994 * 109.47206 * 300.96990 * 3 2 1 31 31 H 1.09003 * 109.46882 * 60.97096 * 3 2 1 32 32 H 1.08997 * 110.86313 * 149.94699 * 4 2 1 33 33 H 1.08997 * 110.86717 * 26.26724 * 4 2 1 34 34 H 1.08997 * 109.47207 * 298.39869 * 6 5 4 35 35 H 1.09003 * 109.47380 * 58.39814 * 6 5 4 36 36 H 1.09003 * 109.47099 * 178.39753 * 6 5 4 37 37 H 0.96994 * 119.99902 * 335.03226 * 7 5 4 38 38 H 1.09005 * 109.47067 * 289.28021 * 11 8 7 39 39 H 1.08998 * 109.47626 * 49.27492 * 11 8 7 40 40 H 0.96998 * 120.00061 * 185.00345 * 16 15 13 41 41 H 1.09005 * 117.49679 * 0.02562 * 21 12 11 42 42 H 1.08997 * 117.49596 * 145.01846 * 21 12 11 43 43 H 1.09002 * 117.50274 * 214.98016 * 22 12 11 44 44 H 1.09004 * 117.50103 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0631 1.4341 0.0000 4 6 2.0698 -0.7794 -1.2209 5 6 2.2301 -2.2062 -0.6506 6 6 3.5824 -2.7956 -1.0565 7 7 1.1396 -3.0667 -1.1159 8 16 1.3535 -4.7072 -1.1905 9 8 0.0542 -5.2184 -1.4548 10 8 2.4124 -4.8805 -2.1221 11 6 1.8921 -5.1698 0.4788 12 6 1.8684 -6.6932 0.6184 13 6 2.6681 -7.4526 -0.4086 14 1 2.2111 -7.7405 -1.3439 15 6 3.9830 -7.7799 -0.1544 16 7 4.5172 -7.4966 1.0136 17 14 5.0060 -8.6256 -1.4688 18 1 5.0782 -7.7598 -2.6732 19 1 6.3765 -8.8669 -0.9504 20 1 4.3767 -9.9219 -1.8280 21 6 0.5753 -7.3362 1.1237 22 6 1.8047 -7.2719 2.0333 23 6 2.1603 -2.0331 0.8512 24 8 2.2068 -2.9322 1.6569 25 8 2.0393 -0.7326 1.1535 26 1 -0.3634 0.4987 0.8986 27 1 -0.3633 0.5288 -0.8811 28 1 -0.3634 -1.0275 -0.0174 29 1 3.1528 1.4167 -0.0173 30 1 1.6940 1.9589 -0.8811 31 1 1.7222 1.9484 0.8986 32 1 3.0315 -0.3795 -1.5424 33 1 1.3496 -0.7668 -2.0389 34 1 3.6370 -2.8654 -2.1429 35 1 4.3833 -2.1517 -0.6931 36 1 3.6904 -3.7898 -0.6227 37 1 0.2909 -2.6759 -1.3765 38 1 2.9054 -4.8051 0.6477 39 1 1.2196 -4.7270 1.2134 40 1 5.4607 -7.6602 1.1678 41 1 -0.2587 -6.6739 1.3562 42 1 0.3031 -8.3086 0.7134 43 1 2.3409 -8.2022 2.2212 44 1 1.7802 -6.5674 2.8647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882223713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:14 Heat of formation + Delta-G solvation = -146.551391 kcal Electronic energy + Delta-G solvation = -29110.767213 eV Core-core repulsion = 25155.732691 eV Total energy + Delta-G solvation = -3955.034522 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.60185 -39.07747 -38.53519 -38.17616 -37.22121 -36.76608 -34.37393 -34.07536 -31.65039 -30.01883 -28.45123 -28.06958 -27.46657 -25.13427 -22.97186 -22.65479 -21.74875 -21.09706 -20.06056 -18.78520 -18.48427 -18.16551 -17.92797 -17.15352 -16.84651 -16.80868 -16.40102 -16.01372 -15.67586 -15.20446 -14.96576 -14.82643 -14.41838 -14.15427 -14.02218 -13.74068 -13.65498 -13.47125 -13.25135 -13.11647 -13.02552 -12.98258 -12.97367 -12.82203 -12.69408 -12.56847 -12.43285 -12.41197 -12.25239 -12.08346 -11.74168 -11.64012 -11.53642 -11.46312 -11.01491 -10.53093 -10.40717 -9.91245 -8.18863 -6.38665 -0.61159 0.77210 1.38056 1.41329 1.49459 1.87597 2.09253 2.39317 2.66183 2.82612 3.04860 3.06529 3.34040 3.40816 3.48262 3.65503 3.75891 3.95410 4.02470 4.15365 4.29505 4.46880 4.55857 4.59735 4.62288 4.67604 4.78032 4.82808 4.84037 4.90580 4.93963 4.95317 4.95964 5.11443 5.20531 5.26424 5.33533 5.45050 5.62522 5.67129 5.71559 5.92824 6.19458 6.32278 6.69585 7.35491 8.87070 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017753 B = 0.004730 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.793626 B = 5918.051775 C = 6089.482152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.092 3.908 3 C -0.140 4.140 4 C -0.136 4.136 5 C 0.123 3.877 6 C -0.181 4.181 7 N -1.094 6.094 8 S 2.623 3.377 9 O -0.994 6.994 10 O -0.972 6.972 11 C -0.538 4.538 12 C 0.007 3.993 13 C -0.540 4.540 14 H 0.051 0.949 15 C 0.045 3.955 16 N -0.891 5.891 17 Si 0.934 3.066 18 H -0.271 1.271 19 H -0.273 1.273 20 H -0.267 1.267 21 C -0.195 4.195 22 C -0.128 4.128 23 C 0.462 3.538 24 O -0.472 6.472 25 O -0.346 6.346 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.045 0.955 37 H 0.429 0.571 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.265 0.735 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.343 22.116 -4.478 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.056 3.944 3 C -0.196 4.196 4 C -0.174 4.174 5 C 0.031 3.969 6 C -0.239 4.239 7 N -0.856 5.856 8 S 2.720 3.280 9 O -0.984 6.984 10 O -0.962 6.962 11 C -0.671 4.671 12 C 0.005 3.995 13 C -0.577 4.577 14 H 0.069 0.931 15 C -0.159 4.159 16 N -0.526 5.526 17 Si 0.758 3.242 18 H -0.196 1.196 19 H -0.197 1.197 20 H -0.192 1.192 21 C -0.232 4.232 22 C -0.167 4.167 23 C 0.300 3.700 24 O -0.356 6.356 25 O -0.263 6.263 26 H 0.092 0.908 27 H 0.136 0.864 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.132 0.868 31 H 0.089 0.911 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.064 0.936 37 H 0.267 0.733 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.103 21.148 -4.507 22.217 hybrid contribution 0.502 -0.725 0.444 0.987 sum -4.602 20.423 -4.063 21.326 Atomic orbital electron populations 1.22421 0.91718 1.03257 1.05688 1.23626 0.95649 0.94094 0.81035 1.21945 1.02516 0.90156 1.05009 1.23599 1.07177 0.88084 0.98567 1.21560 0.89273 0.95655 0.90396 1.22574 0.94046 1.01526 1.05716 1.55622 1.22774 1.24962 1.82288 1.04486 0.73438 0.72239 0.77808 1.93457 1.40895 1.78615 1.85463 1.93513 1.58107 1.84486 1.60076 1.30040 1.11280 1.04990 1.20774 1.18497 0.96898 0.87491 0.96625 1.20667 0.97236 1.38143 1.01691 0.93086 1.25567 0.98615 0.95019 0.96653 1.70109 1.12801 1.47555 1.22178 0.85974 0.78390 0.79523 0.80266 1.19576 1.19744 1.19152 1.23217 0.91552 1.02422 1.06056 1.22324 0.99490 1.01755 0.93115 1.23980 0.71624 0.82327 0.92033 1.90814 1.44761 1.41604 1.58371 1.87096 1.76617 1.19696 1.42858 0.90767 0.86426 0.93087 0.90879 0.86789 0.91137 0.84847 0.84586 0.87496 0.87478 0.93613 0.73296 0.86237 0.86325 0.92548 0.89104 0.89745 0.90979 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 8.77 71.98 0.63 -1.27 16 2 C 0.09 1.24 1.24 -10.26 -0.01 1.22 16 3 C -0.14 -1.01 8.92 71.98 0.64 -0.37 16 4 C -0.14 -1.75 5.49 31.64 0.17 -1.57 16 5 C 0.12 3.07 1.00 3.57 0.00 3.07 16 6 C -0.18 -5.20 7.03 71.98 0.51 -4.70 16 7 N -1.09 -30.87 5.41 -152.37 -0.82 -31.69 16 8 S 2.62 109.62 4.41 -56.49 -0.25 109.37 16 9 O -0.99 -45.28 18.08 -127.65 -2.31 -47.58 16 10 O -0.97 -45.35 14.79 -127.65 -1.89 -47.23 16 11 C -0.54 -25.03 3.78 71.98 0.27 -24.76 16 12 C 0.01 0.37 1.66 -52.93 -0.09 0.28 16 13 C -0.54 -31.17 7.85 25.60 0.20 -30.97 16 14 H 0.05 3.01 7.82 -2.91 -0.02 2.98 16 15 C 0.04 2.55 5.41 84.65 0.46 3.01 16 16 N -0.89 -51.70 12.10 21.45 0.26 -51.44 16 17 Si 0.93 45.08 29.54 68.60 2.03 47.11 16 18 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 21 C -0.20 -9.26 9.93 30.62 0.30 -8.95 16 22 C -0.13 -6.48 8.93 30.62 0.27 -6.21 16 23 C 0.46 13.94 7.27 71.44 0.52 14.46 16 24 O -0.47 -18.51 13.40 21.66 0.29 -18.22 16 25 O -0.35 -8.37 10.48 -50.15 -0.53 -8.90 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.05 0.72 7.45 -2.39 -0.02 0.71 16 29 H 0.07 0.54 8.13 -2.39 -0.02 0.52 16 30 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.13 1.08 7.60 -2.39 -0.02 1.06 16 33 H 0.14 1.03 7.66 -2.39 -0.02 1.02 16 34 H 0.11 2.92 7.51 -2.39 -0.02 2.90 16 35 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.04 1.73 4.53 -2.39 -0.01 1.72 16 37 H 0.43 9.03 8.00 -96.75 -0.77 8.25 16 38 H 0.12 5.89 5.35 -2.39 -0.01 5.88 16 39 H 0.12 5.15 6.56 -2.39 -0.02 5.13 16 40 H 0.27 14.60 8.32 -92.71 -0.77 13.83 16 41 H 0.09 3.84 8.14 -2.38 -0.02 3.82 16 42 H 0.08 3.94 8.14 -2.39 -0.02 3.92 16 43 H 0.07 3.90 7.80 -2.39 -0.02 3.89 16 44 H 0.07 3.51 8.14 -2.38 -0.02 3.49 16 Total: -1.00 -78.81 358.67 0.91 -77.90 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 0.25 Total: 27.45 kcal Atomic # 6 Polarization: -60.65 SS G_CDS: 3.88 Total: -56.76 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -0.57 Total: -83.14 kcal Atomic # 8 Polarization: -117.50 SS G_CDS: -4.43 Total: -121.93 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: 109.62 SS G_CDS: -0.25 Total: 109.37 kcal Total: -78.81 0.91 -77.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882223713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.653 kcal (2) G-P(sol) polarization free energy of solvation -78.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds