Wall clock time and date at job start Tue Mar 31 2020 18:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00025 * 2 1 4 4 C 1.50691 * 108.71002 * 304.49056 * 3 2 1 5 5 O 1.20830 * 120.00241 * 143.16427 * 4 3 2 6 6 O 1.34232 * 119.99790 * 323.15863 * 4 3 2 7 7 C 1.45203 * 116.99843 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.47228 * 330.00062 * 7 6 4 9 9 C 1.52995 * 109.47122 * 90.00454 * 7 6 4 10 10 C 1.50704 * 109.46852 * 210.00505 * 7 6 4 11 11 O 1.21272 * 120.00200 * 359.97438 * 10 7 6 12 12 N 1.34773 * 119.99634 * 180.02562 * 10 7 6 13 13 C 1.46498 * 120.00488 * 359.97438 * 12 10 7 14 14 C 1.46503 * 120.00144 * 179.97438 * 12 10 7 15 15 C 1.50702 * 109.46961 * 90.00000 * 14 12 10 16 16 H 1.08000 * 120.00080 * 0.02562 * 15 14 12 17 17 C 1.37879 * 119.99942 * 180.02562 * 15 14 12 18 18 N 1.31516 * 120.00063 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99851 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47012 * 59.99860 * 19 17 15 21 21 H 1.48498 * 109.46818 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47269 * 299.99830 * 19 17 15 23 23 C 1.52336 * 108.86856 * 62.95480 * 3 2 1 24 24 C 1.54255 * 112.47696 * 120.89148 * 23 3 2 25 25 S 1.83765 * 102.66954 * 335.32364 * 24 23 3 26 26 C 1.54262 * 108.86639 * 186.02627 * 3 2 1 27 27 H 1.08996 * 109.47351 * 185.52872 * 1 2 3 28 28 H 1.08995 * 109.47553 * 305.53981 * 1 2 3 29 29 H 1.09002 * 109.46434 * 65.53306 * 1 2 3 30 30 H 1.08996 * 109.47583 * 60.00028 * 9 7 6 31 31 H 1.08998 * 109.47029 * 179.97438 * 9 7 6 32 32 H 1.09002 * 109.47218 * 299.99868 * 9 7 6 33 33 H 1.09003 * 109.47396 * 89.99967 * 13 12 10 34 34 H 1.09001 * 109.47907 * 209.99903 * 13 12 10 35 35 H 1.09007 * 109.47049 * 330.00213 * 13 12 10 36 36 H 1.09000 * 109.47792 * 209.99891 * 14 12 10 37 37 H 1.08995 * 109.46713 * 330.00411 * 14 12 10 38 38 H 0.96996 * 119.99510 * 180.02562 * 18 17 15 39 39 H 1.08999 * 108.86234 * 241.63499 * 23 3 2 40 40 H 1.08998 * 108.86783 * 0.13790 * 23 3 2 41 41 H 1.09003 * 110.79051 * 93.67151 * 24 23 3 42 42 H 1.09002 * 110.78753 * 217.12160 * 24 23 3 43 43 H 1.08999 * 110.78988 * 21.98042 * 26 3 2 44 44 H 1.09000 * 110.78613 * 145.43802 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4685 2.0758 -1.1764 5 8 1.2406 3.2577 -1.0714 6 8 1.2393 1.4489 -2.3410 7 6 0.7178 2.2537 -3.4313 8 1 0.1154 3.0671 -3.0267 9 6 1.8807 2.8331 -4.2391 10 6 -0.1364 1.3934 -4.3266 11 8 -0.2900 0.2179 -4.0713 12 7 -0.7287 1.9304 -5.4116 13 6 -0.5427 3.3503 -5.7205 14 6 -1.5586 1.0941 -6.2824 15 6 -2.9856 1.1271 -5.7990 16 1 -3.2482 1.7127 -4.9305 17 6 -3.9560 0.4096 -6.4658 18 7 -3.6362 -0.3040 -7.5232 19 14 -5.7248 0.4499 -5.8662 20 1 -6.2264 1.8473 -5.8979 21 1 -6.5660 -0.3977 -6.7489 22 1 -5.7881 -0.0673 -4.4757 23 6 1.6119 2.0221 1.2839 24 6 2.8328 2.4453 2.1263 25 16 4.1256 1.2552 1.5883 26 6 3.5393 1.1707 -0.1533 27 1 -0.3634 -1.0228 0.0990 28 1 -0.3634 0.5973 0.8362 29 1 -0.3632 0.4257 -0.9354 30 1 2.4830 2.0198 -4.6437 31 1 1.4892 3.4369 -5.0578 32 1 2.4985 3.4553 -3.5915 33 1 0.3298 3.4713 -6.3626 34 1 -1.4265 3.7295 -6.2334 35 1 -0.3928 3.9068 -4.7952 36 1 -1.5119 1.4737 -7.3030 37 1 -1.1907 0.0684 -6.2590 38 1 -4.3190 -0.8085 -7.9924 39 1 1.0357 2.9110 1.0270 40 1 0.9862 1.3571 1.8791 41 1 3.1275 3.4686 1.8936 42 1 2.6258 2.3338 3.1906 43 1 3.8001 0.2127 -0.6031 44 1 3.9438 1.9968 -0.7381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885742030.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:54 Heat of formation + Delta-G solvation = -164.221522 kcal Electronic energy + Delta-G solvation = -27704.288703 eV Core-core repulsion = 23748.487946 eV Total energy + Delta-G solvation = -3955.800756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.50522 -40.90956 -39.50449 -37.92330 -36.75890 -35.15738 -34.94778 -33.09575 -31.20788 -29.59992 -27.80243 -27.59330 -27.03445 -26.02022 -24.89870 -23.37442 -21.07128 -20.50985 -19.83447 -18.72214 -18.51848 -17.91362 -17.88431 -17.55135 -17.16597 -16.65185 -16.43541 -16.06908 -15.98015 -15.50241 -15.37050 -14.87222 -14.76294 -14.49829 -14.30432 -14.17069 -13.74327 -13.65627 -13.55841 -13.39099 -13.18653 -13.07802 -13.03179 -12.85437 -12.74154 -12.64408 -12.46625 -12.40837 -12.21830 -12.01092 -11.92962 -11.75606 -11.29153 -10.81831 -10.66554 -10.64641 -9.54596 -8.83420 -8.25464 -6.40378 0.56738 0.65509 1.07045 1.17072 1.35546 1.39395 1.46641 1.58501 2.19175 2.35823 2.41424 3.04646 3.08556 3.17887 3.34497 3.38192 3.67307 3.77449 3.83870 3.91930 4.09282 4.15455 4.27966 4.33707 4.41473 4.47369 4.56642 4.61653 4.63565 4.66480 4.75459 4.77692 4.83210 4.92048 5.06346 5.09871 5.19094 5.48251 5.67393 5.75567 6.01065 6.30868 6.57025 6.68123 7.17622 7.33482 8.81731 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.019764 B = 0.003036 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.404110 B = 9219.662878 C = 9864.117863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.361 6.361 3 C 0.133 3.867 4 C 0.442 3.558 5 O -0.504 6.504 6 O -0.329 6.329 7 C 0.074 3.926 8 H 0.116 0.884 9 C -0.168 4.168 10 C 0.499 3.501 11 O -0.575 6.575 12 N -0.599 5.599 13 C 0.067 3.933 14 C 0.261 3.739 15 C -0.548 4.548 16 H 0.053 0.947 17 C 0.010 3.990 18 N -0.926 5.926 19 Si 0.966 3.034 20 H -0.260 1.260 21 H -0.278 1.278 22 H -0.278 1.278 23 C -0.154 4.154 24 C -0.051 4.051 25 S -0.287 6.287 26 C -0.054 4.054 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.033 0.967 37 H 0.000 1.000 38 H 0.268 0.732 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.136 0.864 43 H 0.129 0.871 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.654 10.740 16.551 23.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.279 6.279 3 C 0.090 3.910 4 C 0.283 3.717 5 O -0.393 6.393 6 O -0.244 6.244 7 C 0.016 3.984 8 H 0.134 0.866 9 C -0.225 4.225 10 C 0.286 3.714 11 O -0.455 6.455 12 N -0.331 5.331 13 C -0.075 4.075 14 C 0.140 3.860 15 C -0.586 4.586 16 H 0.071 0.929 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.790 3.210 20 H -0.184 1.184 21 H -0.203 1.203 22 H -0.204 1.204 23 C -0.193 4.193 24 C -0.199 4.199 25 S -0.060 6.060 26 C -0.202 4.202 27 H 0.126 0.874 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.132 0.868 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.051 0.949 37 H 0.018 0.982 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.154 0.846 43 H 0.147 0.853 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 14.469 9.663 17.114 24.405 hybrid contribution -2.302 0.303 -0.941 2.505 sum 12.168 9.966 16.173 22.560 Atomic orbital electron populations 1.23095 0.79416 1.05145 1.00341 1.88118 1.21168 1.24239 1.94375 1.22374 0.94776 0.84027 0.89841 1.24990 0.74636 0.87423 0.84690 1.90629 1.48206 1.16784 1.83633 1.86750 1.74240 1.42891 1.20483 1.22630 0.97477 0.92294 0.86018 0.86645 1.22428 0.96324 1.02262 1.01497 1.20601 0.80620 0.88014 0.82180 1.90679 1.63442 1.18858 1.72505 1.48035 1.47651 1.12041 1.25375 1.22252 1.03365 0.79130 1.02708 1.18836 0.88577 0.89658 0.88919 1.21658 0.93919 1.29853 1.13212 0.92892 1.25834 1.03804 0.94346 0.94933 1.70033 1.35675 1.30736 1.20092 0.85494 0.78625 0.78887 0.77985 1.18397 1.20266 1.20375 1.22681 1.00608 1.02838 0.93138 1.24194 0.91357 1.00137 1.04163 1.88174 1.46176 1.61425 1.10247 1.24140 0.90152 1.08695 0.97225 0.87356 0.90882 0.95637 0.91309 0.86827 0.89190 0.89594 0.90647 0.89301 0.94897 0.98162 0.92280 0.87804 0.87095 0.87200 0.84590 0.85308 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.15 113.37 1.15 1.54 16 2 O -0.36 -9.43 9.99 -135.39 -1.35 -10.79 16 3 C 0.13 2.96 0.96 -11.33 -0.01 2.95 16 4 C 0.44 11.83 5.30 71.23 0.38 12.21 16 5 O -0.50 -13.69 14.61 21.95 0.32 -13.37 16 6 O -0.33 -10.70 8.18 -42.71 -0.35 -11.04 16 7 C 0.07 2.30 2.18 29.85 0.07 2.36 16 8 H 0.12 3.33 6.42 -2.39 -0.02 3.31 16 9 C -0.17 -3.76 9.18 71.98 0.66 -3.10 16 10 C 0.50 21.20 7.15 87.66 0.63 21.82 16 11 O -0.58 -30.69 16.08 15.79 0.25 -30.44 16 12 N -0.60 -24.85 2.86 -851.13 -2.43 -27.28 16 13 C 0.07 1.87 8.80 127.77 1.12 2.99 16 14 C 0.26 13.82 5.16 85.63 0.44 14.27 16 15 C -0.55 -31.19 9.39 25.60 0.24 -30.95 16 16 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 17 C 0.01 0.59 5.46 84.65 0.46 1.05 16 18 N -0.93 -55.35 13.29 21.45 0.28 -55.06 16 19 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 20 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 23 C -0.15 -2.53 5.03 30.80 0.15 -2.38 16 24 C -0.05 -0.64 7.44 72.41 0.54 -0.10 16 25 S -0.29 -5.25 23.26 -56.49 -1.31 -6.57 16 26 C -0.05 -1.05 6.61 72.41 0.48 -0.57 16 27 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.07 1.38 6.35 -2.39 -0.02 1.36 16 29 H 0.02 0.80 6.51 -2.39 -0.02 0.79 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.11 2.07 4.53 -2.39 -0.01 2.06 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 1.85 6.95 -2.39 -0.02 1.83 16 34 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 35 H 0.09 1.94 6.01 -2.38 -0.01 1.93 16 36 H 0.03 1.74 8.07 -2.39 -0.02 1.72 16 37 H 0.00 0.02 7.42 -2.39 -0.02 0.00 16 38 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 39 H 0.10 1.78 6.45 -2.39 -0.02 1.77 16 40 H 0.11 1.61 6.42 -2.39 -0.02 1.59 16 41 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.13 2.59 8.04 -2.39 -0.02 2.57 16 44 H 0.12 1.98 7.85 -2.39 -0.02 1.97 16 Total: -1.00 -76.73 367.85 4.77 -71.96 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 1.02 Total: 14.19 kcal Atomic # 6 Polarization: 15.77 SS G_CDS: 6.31 Total: 22.09 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -2.15 Total: -82.34 kcal Atomic # 8 Polarization: -64.51 SS G_CDS: -1.13 Total: -65.64 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -1.31 Total: -6.57 kcal Total: -76.73 4.77 -71.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885742030.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.260 kcal (2) G-P(sol) polarization free energy of solvation -76.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds