Wall clock time and date at job start Tue Mar 31 2020 18:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99880 * 2 1 4 4 C 1.50696 * 108.85190 * 56.17300 * 3 2 1 5 5 O 1.20831 * 120.00088 * 214.77202 * 4 3 2 6 6 O 1.34231 * 120.00081 * 34.77854 * 4 3 2 7 7 C 1.45202 * 117.00062 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.46836 * 329.99177 * 7 6 4 9 9 C 1.52997 * 109.47183 * 89.99587 * 7 6 4 10 10 C 1.50704 * 109.46920 * 209.99637 * 7 6 4 11 11 O 1.21284 * 119.99654 * 359.97438 * 10 7 6 12 12 N 1.34777 * 120.00101 * 179.97438 * 10 7 6 13 13 C 1.46507 * 119.99598 * 0.02562 * 12 10 7 14 14 C 1.46489 * 120.00109 * 180.02562 * 12 10 7 15 15 C 1.50698 * 109.47262 * 90.00069 * 14 12 10 16 16 H 1.08001 * 120.00364 * 0.02562 * 15 14 12 17 17 C 1.37880 * 120.00400 * 179.97438 * 15 14 12 18 18 N 1.31511 * 119.99780 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00218 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47229 * 90.00122 * 19 17 15 21 21 H 1.48499 * 109.47171 * 209.99648 * 19 17 15 22 22 H 1.48498 * 109.47189 * 330.00102 * 19 17 15 23 23 C 1.52942 * 108.77714 * 297.65860 * 3 2 1 24 24 C 1.55149 * 108.96161 * 269.38996 * 23 3 2 25 25 S 1.83990 * 100.90632 * 318.55502 * 24 23 3 26 26 C 1.53713 * 108.88908 * 174.74872 * 3 2 1 27 27 H 1.08997 * 109.47289 * 306.36371 * 1 2 3 28 28 H 1.09005 * 109.46609 * 66.35791 * 1 2 3 29 29 H 1.08997 * 109.47118 * 186.35624 * 1 2 3 30 30 H 1.09007 * 109.46769 * 180.02562 * 9 7 6 31 31 H 1.09001 * 109.47329 * 299.99539 * 9 7 6 32 32 H 1.08996 * 109.47129 * 60.00202 * 9 7 6 33 33 H 1.08995 * 109.46649 * 89.99894 * 13 12 10 34 34 H 1.09001 * 109.46910 * 209.99779 * 13 12 10 35 35 H 1.09000 * 109.47006 * 329.99865 * 13 12 10 36 36 H 1.09005 * 109.47147 * 210.00113 * 14 12 10 37 37 H 1.08998 * 109.47635 * 330.00187 * 14 12 10 38 38 H 0.97002 * 120.00626 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.60253 * 149.45330 * 23 3 2 40 40 H 1.09003 * 109.59808 * 29.31342 * 23 3 2 41 41 H 1.09001 * 111.13045 * 200.64684 * 24 23 3 42 42 H 1.09000 * 111.13292 * 76.46840 * 24 23 3 43 43 H 1.09000 * 110.33743 * 358.95622 * 26 3 2 44 44 H 1.08990 * 110.34463 * 236.69906 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4830 2.0732 1.1847 5 8 1.2908 3.2629 1.0967 6 8 1.2270 1.4355 2.3378 7 6 0.7205 2.2381 3.4367 8 1 1.1074 3.2537 3.3532 9 6 -0.8082 2.2688 3.3836 10 6 1.1658 1.6369 4.7448 11 8 1.8430 0.6307 4.7504 12 7 0.8117 2.2173 5.9085 13 6 -0.0067 3.4324 5.9017 14 6 1.2450 1.6331 7.1801 15 6 2.5718 2.2261 7.5791 16 1 3.0447 2.9646 6.9487 17 6 3.1815 1.8266 8.7494 18 7 2.6054 0.9277 9.5174 19 14 4.8257 2.5622 9.2443 20 1 4.5970 3.7756 10.0693 21 1 5.5965 1.5666 10.0316 22 1 5.5907 2.9292 8.0256 23 6 1.5964 2.0286 -1.2826 24 6 2.6553 1.7510 -2.3819 25 16 4.2114 1.8945 -1.4107 26 6 3.5356 1.1710 0.1331 27 1 -0.3634 0.6093 0.8275 28 1 -0.3633 0.4121 -0.9415 29 1 -0.3633 -1.0213 0.1138 30 1 -1.1884 2.8717 4.2083 31 1 -1.1304 2.7037 2.4375 32 1 -1.1951 1.2532 3.4671 33 1 -1.0618 3.1599 5.9268 34 1 0.2333 4.0370 6.7763 35 1 0.1995 4.0042 4.9969 36 1 0.5043 1.8488 7.9502 37 1 1.3486 0.5539 7.0677 38 1 3.0341 0.6469 10.3410 39 1 1.5364 3.1006 -1.0948 40 1 0.6236 1.6625 -1.6111 41 1 2.6121 2.5044 -3.1684 42 1 2.5404 0.7484 -2.7941 43 1 3.8178 0.1213 0.2147 44 1 3.8909 1.7282 0.9998 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885742031.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:00 Heat of formation + Delta-G solvation = -143.065791 kcal Electronic energy + Delta-G solvation = -27644.581264 eV Core-core repulsion = 23689.697889 eV Total energy + Delta-G solvation = -3954.883375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.40941 -39.47224 -38.42500 -36.70973 -35.01450 -34.28783 -32.97146 -31.70667 -30.41558 -27.73520 -26.96232 -26.38009 -26.08528 -24.58241 -23.38387 -21.96977 -20.21839 -18.98957 -18.72251 -17.39499 -17.10068 -16.70700 -16.56543 -16.24680 -15.86996 -15.55005 -15.24719 -14.68900 -14.56765 -14.45095 -14.11089 -13.78827 -13.48991 -13.43409 -13.01917 -12.68399 -12.63096 -12.46856 -12.40355 -12.32611 -12.26425 -12.15755 -11.72240 -11.58326 -11.40635 -11.19697 -10.95542 -10.89020 -10.81389 -10.61379 -10.48846 -10.20031 -9.98743 -9.69087 -8.97655 -8.47968 -8.02675 -7.78599 -6.09072 -4.14282 1.38069 1.68020 1.93870 2.14469 3.19018 3.21533 3.28253 3.35335 3.40332 3.71266 3.89171 4.12435 4.28664 4.41205 4.44726 4.67394 4.73111 4.82522 4.86051 4.96597 4.98919 5.04036 5.10443 5.19651 5.25657 5.37121 5.40786 5.44471 5.49938 5.52523 5.55667 5.76318 5.87472 6.14690 6.19970 6.49059 6.92269 7.34052 7.39011 7.46787 7.86617 8.16061 8.22781 8.79398 8.94373 9.51048 10.99078 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015898 B = 0.003199 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.830598 B = 8751.263009 C = 9670.400701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.352 6.352 3 C 0.134 3.866 4 C 0.442 3.558 5 O -0.494 6.494 6 O -0.309 6.309 7 C 0.065 3.935 8 H 0.107 0.893 9 C -0.176 4.176 10 C 0.508 3.492 11 O -0.516 6.516 12 N -0.595 5.595 13 C 0.075 3.925 14 C 0.247 3.753 15 C -0.530 4.530 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.274 1.274 23 C -0.154 4.154 24 C -0.063 4.063 25 S -0.265 6.265 26 C -0.059 4.059 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.036 0.964 37 H 0.046 0.954 38 H 0.264 0.736 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.125 0.875 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.084 2.843 -22.324 23.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.270 6.270 3 C 0.091 3.909 4 C 0.282 3.718 5 O -0.382 6.382 6 O -0.224 6.224 7 C 0.006 3.994 8 H 0.124 0.876 9 C -0.233 4.233 10 C 0.292 3.708 11 O -0.391 6.391 12 N -0.329 5.329 13 C -0.068 4.068 14 C 0.129 3.871 15 C -0.569 4.569 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.193 4.193 24 C -0.211 4.211 25 S -0.039 6.039 26 C -0.207 4.207 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.129 0.871 40 H 0.117 0.883 41 H 0.133 0.867 42 H 0.117 0.883 43 H 0.143 0.857 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.543 2.796 -22.386 23.490 hybrid contribution -0.470 0.394 0.827 1.029 sum -7.013 3.190 -21.559 22.895 Atomic orbital electron populations 1.23056 0.80145 1.04333 1.00287 1.88131 1.20607 1.23888 1.94383 1.22087 0.94250 0.84184 0.90366 1.24302 0.74851 0.87399 0.85259 1.90661 1.48154 1.15952 1.83397 1.86729 1.74710 1.41154 1.19759 1.22733 0.95690 0.96082 0.84881 0.87582 1.22414 0.92411 1.04317 1.04134 1.19711 0.81578 0.85293 0.84185 1.90724 1.37267 1.24584 1.86549 1.48065 1.51092 1.26416 1.07302 1.21890 0.94273 0.87803 1.02883 1.19358 0.95012 0.95435 0.77341 1.21419 1.05113 1.24134 1.06258 0.92423 1.24930 0.97898 0.94952 0.96224 1.69925 1.39139 1.30642 1.13531 0.86481 0.83559 0.78770 0.78554 1.20575 1.20984 1.19856 1.23019 1.00546 1.04063 0.91642 1.24291 0.91707 1.06129 0.98983 1.87997 1.21334 1.83078 1.11453 1.23927 0.90810 1.07101 0.98887 0.93133 0.93332 0.88132 0.88619 0.91527 0.90883 0.92998 0.90222 0.92355 0.94572 0.93607 0.92616 0.87061 0.88339 0.86688 0.88279 0.85660 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.23 101.05 1.03 1.19 16 2 O -0.35 -4.10 9.98 -49.94 -0.50 -4.60 16 3 C 0.13 1.56 0.97 -91.43 -0.09 1.47 16 4 C 0.44 6.28 5.07 36.00 0.18 6.46 16 5 O -0.49 -7.45 14.76 -18.75 -0.28 -7.73 16 6 O -0.31 -5.10 8.19 -48.45 -0.40 -5.50 16 7 C 0.06 1.05 2.18 -27.88 -0.06 0.99 16 8 H 0.11 1.67 6.41 -51.93 -0.33 1.33 16 9 C -0.18 -2.14 9.18 37.16 0.34 -1.80 16 10 C 0.51 10.74 7.15 -10.98 -0.08 10.66 16 11 O -0.52 -13.32 16.08 -14.11 -0.23 -13.55 16 12 N -0.59 -12.39 2.86 -182.96 -0.52 -12.91 16 13 C 0.08 1.13 8.80 59.85 0.53 1.66 16 14 C 0.25 6.36 5.16 -5.20 -0.03 6.34 16 15 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16 16 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 19 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 C -0.15 -1.36 5.27 -25.62 -0.14 -1.49 16 24 C -0.06 -0.48 7.52 38.29 0.29 -0.19 16 25 S -0.26 -2.91 23.23 -107.50 -2.50 -5.40 16 26 C -0.06 -0.71 6.76 37.53 0.25 -0.46 16 27 H 0.05 0.51 6.18 -51.93 -0.32 0.19 16 28 H 0.05 0.32 6.24 -51.93 -0.32 -0.01 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 1.03 4.53 -51.93 -0.24 0.79 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.64 6.95 -51.93 -0.36 0.28 16 34 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 35 H 0.06 0.74 6.01 -51.93 -0.31 0.43 16 36 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.11 1.08 6.78 -51.93 -0.35 0.73 16 40 H 0.10 0.67 5.75 -51.93 -0.30 0.38 16 41 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.13 1.43 7.93 -51.93 -0.41 1.02 16 44 H 0.12 1.50 7.63 -51.93 -0.40 1.10 16 LS Contribution 367.21 15.07 5.53 5.53 Total: -1.00 -34.72 367.21 -7.58 -42.30 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.23 Total: -0.59 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 1.82 Total: 11.22 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.21 Total: -38.52 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -1.40 Total: -31.38 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -2.91 SS G_CDS: -2.50 Total: -5.40 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.72 -7.58 -42.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885742031.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.761 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds