Wall clock time and date at job start Tue Mar 31 2020 18:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 114.00260 * 2 1 4 4 C 1.50702 * 109.60428 * 305.40627 * 3 2 1 5 5 O 1.20827 * 120.00113 * 142.99808 * 4 3 2 6 6 O 1.34230 * 119.99868 * 322.99417 * 4 3 2 7 7 C 1.45199 * 116.99769 * 180.02562 * 6 4 3 8 8 H 1.08995 * 109.47745 * 29.99727 * 7 6 4 9 9 C 1.53000 * 109.46774 * 269.99664 * 7 6 4 10 10 C 1.50704 * 109.47164 * 149.99881 * 7 6 4 11 11 O 1.21275 * 119.99947 * 14.51935 * 10 7 6 12 12 N 1.34773 * 119.99783 * 194.51432 * 10 7 6 13 13 C 1.46499 * 120.00182 * 4.92613 * 12 10 7 14 14 C 1.46502 * 119.99662 * 184.92380 * 12 10 7 15 15 C 1.50699 * 109.47123 * 90.00684 * 14 12 10 16 16 H 1.07998 * 120.00323 * 359.97438 * 15 14 12 17 17 C 1.37878 * 119.99784 * 180.02562 * 15 14 12 18 18 N 1.31510 * 120.00455 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99823 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46645 * 90.00056 * 19 17 15 21 21 H 1.48496 * 109.47129 * 209.99930 * 19 17 15 22 22 H 1.48499 * 109.47214 * 330.00369 * 19 17 15 23 23 C 1.53853 * 109.46452 * 65.65019 * 3 2 1 24 24 C 1.55138 * 106.89793 * 72.58312 * 23 3 2 25 25 S 1.83463 * 102.20415 * 42.11324 * 24 23 3 26 26 C 1.54273 * 109.61335 * 185.06641 * 3 2 1 27 27 H 1.08996 * 109.47703 * 64.71251 * 1 2 3 28 28 H 1.08999 * 109.47099 * 184.71702 * 1 2 3 29 29 H 1.09003 * 109.46956 * 304.71294 * 1 2 3 30 30 H 1.09004 * 109.46893 * 175.39089 * 9 7 6 31 31 H 1.08993 * 109.47346 * 295.39210 * 9 7 6 32 32 H 1.09002 * 109.47088 * 55.39949 * 9 7 6 33 33 H 1.09004 * 109.47312 * 94.59666 * 13 12 10 34 34 H 1.09004 * 109.46852 * 214.59056 * 13 12 10 35 35 H 1.08991 * 109.47540 * 334.59685 * 13 12 10 36 36 H 1.09004 * 109.46906 * 210.00177 * 14 12 10 37 37 H 1.08996 * 109.47472 * 329.99833 * 14 12 10 38 38 H 0.97002 * 120.00477 * 180.02562 * 18 17 15 39 39 H 1.08997 * 109.97782 * 191.93722 * 23 3 2 40 40 H 1.09000 * 109.98008 * 313.18268 * 23 3 2 41 41 H 1.09004 * 110.85668 * 283.93963 * 24 23 3 42 42 H 1.09006 * 110.85944 * 160.29610 * 24 23 3 43 43 H 1.09002 * 110.40337 * 149.41342 * 26 3 2 44 44 H 1.09010 * 110.40012 * 27.00069 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4645 2.1019 -1.1571 5 8 1.2454 3.2831 -1.0276 6 8 1.2219 1.4991 -2.3317 7 6 0.6973 2.3282 -3.4021 8 1 1.0617 3.3486 -3.2833 9 6 -0.8317 2.3233 -3.3483 10 6 1.1550 1.7828 -4.7303 11 8 1.6229 0.6660 -4.7984 12 7 1.0443 2.5361 -5.8423 13 6 0.5805 3.9223 -5.7449 14 6 1.3879 1.9687 -7.1486 15 6 0.1638 1.3366 -7.7594 16 1 -0.7760 1.3553 -7.2277 17 6 0.2440 0.7336 -8.9967 18 7 1.3884 0.7104 -9.6441 19 14 -1.2732 -0.0505 -9.7536 20 1 -1.9977 0.9582 -10.5679 21 1 -0.8641 -1.1850 -10.6200 22 1 -2.1640 -0.5479 -8.6745 23 6 1.6724 2.0170 1.3216 24 6 2.5260 1.3429 2.4278 25 16 4.1506 1.1464 1.5983 26 6 3.5432 1.1896 -0.1283 27 1 -0.3634 0.4389 -0.9291 28 1 -0.3633 -1.0242 0.0845 29 1 -0.3633 0.5852 0.8448 30 1 -1.2239 3.0093 -4.0991 31 1 -1.1991 1.3168 -3.5485 32 1 -1.1615 2.6404 -2.3590 33 1 1.4401 4.5898 -5.6850 34 1 -0.0112 4.1702 -6.6262 35 1 -0.0326 4.0384 -4.8512 36 1 1.7535 2.7597 -7.8034 37 1 2.1633 1.2129 -7.0239 38 1 1.4447 0.2864 -10.5147 39 1 1.9244 3.0750 1.2498 40 1 0.6121 1.9015 1.5463 41 1 2.1104 0.3731 2.7017 42 1 2.6115 1.9902 3.3006 43 1 3.9473 2.0562 -0.6517 44 1 3.8126 0.2706 -0.6490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885742032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:08 Heat of formation + Delta-G solvation = -147.843780 kcal Electronic energy + Delta-G solvation = -27586.414111 eV Core-core repulsion = 23631.323547 eV Total energy + Delta-G solvation = -3955.090564 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.38996 -39.45331 -38.44980 -36.73844 -34.96100 -34.33627 -32.90818 -31.77421 -30.38863 -27.84041 -26.95566 -26.25125 -26.01366 -24.61539 -23.40229 -21.99995 -20.33416 -18.95194 -18.67733 -17.40356 -17.12355 -16.70549 -16.55009 -16.30863 -15.96417 -15.40737 -15.33611 -14.79523 -14.52903 -14.35865 -14.25344 -13.72510 -13.48963 -13.38435 -12.98789 -12.77807 -12.57620 -12.52275 -12.44782 -12.26600 -12.23005 -12.14085 -11.78994 -11.65727 -11.48803 -11.28215 -10.97814 -10.92248 -10.84029 -10.62465 -10.51144 -10.21955 -10.00453 -9.70731 -8.99342 -8.49517 -8.00399 -7.78340 -6.10311 -4.15933 1.32306 1.61435 1.99418 2.15813 3.11457 3.15644 3.26143 3.33431 3.37296 3.70756 3.89535 4.06915 4.25509 4.38298 4.40713 4.65169 4.73149 4.80119 4.88686 4.93422 4.96973 5.07350 5.11090 5.19602 5.24284 5.37340 5.38068 5.40520 5.49028 5.54485 5.57000 5.81624 5.98367 6.14486 6.16320 6.47020 6.92423 7.34761 7.36294 7.44098 7.85154 8.14683 8.22434 8.77681 8.92842 9.49322 10.97858 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.022211 B = 0.002788 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.347575 B =10040.673792 C =10047.404846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.346 6.346 3 C 0.128 3.872 4 C 0.446 3.554 5 O -0.496 6.496 6 O -0.309 6.309 7 C 0.065 3.935 8 H 0.103 0.897 9 C -0.164 4.164 10 C 0.509 3.491 11 O -0.517 6.517 12 N -0.595 5.595 13 C 0.072 3.928 14 C 0.246 3.754 15 C -0.531 4.531 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.893 5.893 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.274 1.274 23 C -0.146 4.146 24 C -0.067 4.067 25 S -0.261 6.261 26 C -0.062 4.062 27 H 0.054 0.946 28 H 0.101 0.899 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.036 0.964 37 H 0.047 0.953 38 H 0.264 0.736 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.994 5.442 22.889 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.264 6.264 3 C 0.085 3.915 4 C 0.285 3.715 5 O -0.384 6.384 6 O -0.224 6.224 7 C 0.006 3.994 8 H 0.121 0.879 9 C -0.222 4.222 10 C 0.293 3.707 11 O -0.392 6.392 12 N -0.329 5.329 13 C -0.072 4.072 14 C 0.127 3.873 15 C -0.570 4.570 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.184 4.184 24 C -0.215 4.215 25 S -0.035 6.035 26 C -0.210 4.210 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.127 0.873 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.497 4.827 23.098 23.602 hybrid contribution -2.301 0.128 -1.158 2.579 sum -2.798 4.954 21.940 22.666 Atomic orbital electron populations 1.23084 0.79943 1.04241 1.00807 1.88119 1.20685 1.23226 1.94364 1.22285 0.94183 0.84451 0.90603 1.24200 0.75114 0.87347 0.84802 1.90667 1.48107 1.16445 1.83157 1.86747 1.74228 1.41743 1.19634 1.22793 0.95778 0.95446 0.85354 0.87895 1.22182 0.92007 1.04698 1.03275 1.19693 0.80418 0.86275 0.84288 1.90716 1.43889 1.18972 1.85604 1.48079 1.64653 1.11774 1.08389 1.21866 0.99315 0.83242 1.02787 1.19365 0.97096 0.94623 0.76179 1.21406 0.95811 1.36987 1.02748 0.92371 1.24938 0.96340 0.95839 0.96912 1.69926 1.24455 1.44230 1.14529 0.86480 0.82750 0.79008 0.79090 1.20602 1.21009 1.19865 1.23057 1.02393 1.02120 0.90851 1.24195 0.93052 1.04558 0.99656 1.87646 1.15139 1.97456 1.03229 1.24010 0.91298 1.08545 0.97182 0.92755 0.88051 0.93432 0.89271 0.90496 0.91500 0.93223 0.90296 0.92077 0.94601 0.93530 0.92591 0.87349 0.88437 0.88235 0.87057 0.86992 0.85593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.30 101.05 1.04 1.18 16 2 O -0.35 -4.06 10.05 -48.22 -0.48 -4.54 16 3 C 0.13 1.43 0.79 -90.66 -0.07 1.36 16 4 C 0.45 6.05 5.45 36.01 0.20 6.24 16 5 O -0.50 -7.04 15.06 -18.75 -0.28 -7.33 16 6 O -0.31 -5.01 8.26 -48.15 -0.40 -5.41 16 7 C 0.06 1.04 2.12 -27.88 -0.06 0.98 16 8 H 0.10 1.51 6.25 -51.93 -0.32 1.18 16 9 C -0.16 -2.20 9.25 37.16 0.34 -1.85 16 10 C 0.51 10.71 6.97 -10.99 -0.08 10.64 16 11 O -0.52 -13.23 16.12 -13.64 -0.22 -13.45 16 12 N -0.60 -12.43 2.86 -182.96 -0.52 -12.95 16 13 C 0.07 1.10 9.99 59.85 0.60 1.70 16 14 C 0.25 6.33 5.22 -5.19 -0.03 6.31 16 15 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16 16 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 19 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.15 -1.22 4.98 -25.16 -0.13 -1.35 16 24 C -0.07 -0.50 7.27 38.29 0.28 -0.22 16 25 S -0.26 -2.68 23.26 -107.50 -2.50 -5.18 16 26 C -0.06 -0.69 6.51 37.82 0.25 -0.45 16 27 H 0.05 0.59 6.51 -51.93 -0.34 0.25 16 28 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.33 6.16 -51.93 -0.32 0.01 16 30 H 0.09 1.09 6.19 -51.93 -0.32 0.77 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.21 8.11 -51.93 -0.42 0.79 16 35 H 0.06 0.76 4.43 -51.93 -0.23 0.53 16 36 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.11 0.95 7.46 -51.93 -0.39 0.56 16 40 H 0.10 0.68 6.14 -51.93 -0.32 0.36 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.11 1.20 7.89 -51.93 -0.41 0.79 16 44 H 0.13 1.46 8.08 -51.92 -0.42 1.04 16 LS Contribution 371.09 15.07 5.59 5.59 Total: -1.00 -34.09 371.09 -7.55 -41.64 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.37 Total: -0.50 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 1.92 Total: 11.15 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.21 Total: -38.42 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -1.38 Total: -30.73 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.50 Total: -5.18 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.09 -7.55 -41.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885742032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.201 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds