Wall clock time and date at job start Tue Mar 31 2020 18:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 114.00260 * 2 1 4 4 C 1.50702 * 109.60428 * 305.40627 * 3 2 1 5 5 O 1.20827 * 120.00113 * 142.99808 * 4 3 2 6 6 O 1.34230 * 119.99868 * 322.99417 * 4 3 2 7 7 C 1.45199 * 116.99769 * 180.02562 * 6 4 3 8 8 H 1.08995 * 109.47745 * 29.99727 * 7 6 4 9 9 C 1.53000 * 109.46774 * 269.99664 * 7 6 4 10 10 C 1.50704 * 109.47164 * 149.99881 * 7 6 4 11 11 O 1.21275 * 119.99947 * 14.51935 * 10 7 6 12 12 N 1.34773 * 119.99783 * 194.51432 * 10 7 6 13 13 C 1.46499 * 120.00182 * 4.92613 * 12 10 7 14 14 C 1.46502 * 119.99662 * 184.92380 * 12 10 7 15 15 C 1.50699 * 109.47123 * 90.00684 * 14 12 10 16 16 H 1.07998 * 120.00323 * 359.97438 * 15 14 12 17 17 C 1.37878 * 119.99784 * 180.02562 * 15 14 12 18 18 N 1.31510 * 120.00455 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99823 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46645 * 90.00056 * 19 17 15 21 21 H 1.48496 * 109.47129 * 209.99930 * 19 17 15 22 22 H 1.48499 * 109.47214 * 330.00369 * 19 17 15 23 23 C 1.53853 * 109.46452 * 65.65019 * 3 2 1 24 24 C 1.55138 * 106.89793 * 72.58312 * 23 3 2 25 25 S 1.83463 * 102.20415 * 42.11324 * 24 23 3 26 26 C 1.54273 * 109.61335 * 185.06641 * 3 2 1 27 27 H 1.08996 * 109.47703 * 64.71251 * 1 2 3 28 28 H 1.08999 * 109.47099 * 184.71702 * 1 2 3 29 29 H 1.09003 * 109.46956 * 304.71294 * 1 2 3 30 30 H 1.09004 * 109.46893 * 175.39089 * 9 7 6 31 31 H 1.08993 * 109.47346 * 295.39210 * 9 7 6 32 32 H 1.09002 * 109.47088 * 55.39949 * 9 7 6 33 33 H 1.09004 * 109.47312 * 94.59666 * 13 12 10 34 34 H 1.09004 * 109.46852 * 214.59056 * 13 12 10 35 35 H 1.08991 * 109.47540 * 334.59685 * 13 12 10 36 36 H 1.09004 * 109.46906 * 210.00177 * 14 12 10 37 37 H 1.08996 * 109.47472 * 329.99833 * 14 12 10 38 38 H 0.97002 * 120.00477 * 180.02562 * 18 17 15 39 39 H 1.08997 * 109.97782 * 191.93722 * 23 3 2 40 40 H 1.09000 * 109.98008 * 313.18268 * 23 3 2 41 41 H 1.09004 * 110.85668 * 283.93963 * 24 23 3 42 42 H 1.09006 * 110.85944 * 160.29610 * 24 23 3 43 43 H 1.09002 * 110.40337 * 149.41342 * 26 3 2 44 44 H 1.09010 * 110.40012 * 27.00069 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4645 2.1019 -1.1571 5 8 1.2454 3.2831 -1.0276 6 8 1.2219 1.4991 -2.3317 7 6 0.6973 2.3282 -3.4021 8 1 1.0617 3.3486 -3.2833 9 6 -0.8317 2.3233 -3.3483 10 6 1.1550 1.7828 -4.7303 11 8 1.6229 0.6660 -4.7984 12 7 1.0443 2.5361 -5.8423 13 6 0.5805 3.9223 -5.7449 14 6 1.3879 1.9687 -7.1486 15 6 0.1638 1.3366 -7.7594 16 1 -0.7760 1.3553 -7.2277 17 6 0.2440 0.7336 -8.9967 18 7 1.3884 0.7104 -9.6441 19 14 -1.2732 -0.0505 -9.7536 20 1 -1.9977 0.9582 -10.5679 21 1 -0.8641 -1.1850 -10.6200 22 1 -2.1640 -0.5479 -8.6745 23 6 1.6724 2.0170 1.3216 24 6 2.5260 1.3429 2.4278 25 16 4.1506 1.1464 1.5983 26 6 3.5432 1.1896 -0.1283 27 1 -0.3634 0.4389 -0.9291 28 1 -0.3633 -1.0242 0.0845 29 1 -0.3633 0.5852 0.8448 30 1 -1.2239 3.0093 -4.0991 31 1 -1.1991 1.3168 -3.5485 32 1 -1.1615 2.6404 -2.3590 33 1 1.4401 4.5898 -5.6850 34 1 -0.0112 4.1702 -6.6262 35 1 -0.0326 4.0384 -4.8512 36 1 1.7535 2.7597 -7.8034 37 1 2.1633 1.2129 -7.0239 38 1 1.4447 0.2864 -10.5147 39 1 1.9244 3.0750 1.2498 40 1 0.6121 1.9015 1.5463 41 1 2.1104 0.3731 2.7017 42 1 2.6115 1.9902 3.3006 43 1 3.9473 2.0562 -0.6517 44 1 3.8126 0.2706 -0.6490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885742032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:06 Heat of formation + Delta-G solvation = -169.244029 kcal Electronic energy + Delta-G solvation = -27587.342096 eV Core-core repulsion = 23631.323547 eV Total energy + Delta-G solvation = -3956.018549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.46910 -40.89161 -39.53520 -37.92222 -36.73134 -35.10841 -34.89084 -33.15950 -31.16917 -29.72189 -27.76341 -27.58533 -27.00177 -26.01685 -24.80390 -23.32301 -21.27728 -20.47264 -19.70415 -18.71524 -18.50096 -18.08362 -17.76240 -17.64683 -17.10211 -16.73196 -16.44515 -16.30910 -16.03838 -15.39778 -15.08042 -14.90967 -14.76083 -14.36420 -14.29218 -14.14265 -13.71510 -13.62961 -13.52002 -13.41929 -13.27925 -13.19241 -13.11816 -13.03612 -12.88769 -12.70556 -12.52724 -12.32969 -12.22744 -12.03473 -11.82051 -11.73853 -11.27655 -10.88518 -10.65956 -10.65491 -9.55904 -8.80061 -8.24726 -6.39835 0.47287 0.67099 1.06556 1.24093 1.36686 1.39998 1.49178 1.55881 2.18457 2.34498 2.40621 3.05647 3.08744 3.22657 3.28667 3.34492 3.63925 3.71315 3.75319 3.99960 4.10747 4.19006 4.20320 4.34540 4.39217 4.45943 4.51121 4.61617 4.62336 4.67120 4.74602 4.82660 4.86176 4.89981 5.02774 5.08001 5.18478 5.48365 5.67563 5.75563 6.00915 6.29703 6.55619 6.69074 7.16322 7.33479 8.83012 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.022211 B = 0.002788 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.347575 B =10040.673792 C =10047.404846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.363 6.363 3 C 0.128 3.872 4 C 0.448 3.552 5 O -0.500 6.500 6 O -0.331 6.331 7 C 0.075 3.925 8 H 0.123 0.877 9 C -0.158 4.158 10 C 0.500 3.500 11 O -0.577 6.577 12 N -0.599 5.599 13 C 0.065 3.935 14 C 0.259 3.741 15 C -0.545 4.545 16 H 0.059 0.941 17 C 0.008 3.992 18 N -0.929 5.929 19 Si 0.970 3.030 20 H -0.262 1.262 21 H -0.283 1.283 22 H -0.270 1.270 23 C -0.139 4.139 24 C -0.052 4.052 25 S -0.289 6.289 26 C -0.065 4.065 27 H 0.037 0.963 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.030 0.970 37 H -0.001 1.001 38 H 0.268 0.732 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.109 0.891 42 H 0.138 0.862 43 H 0.110 0.890 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.348 6.748 24.950 26.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.281 6.281 3 C 0.085 3.915 4 C 0.288 3.712 5 O -0.388 6.388 6 O -0.246 6.246 7 C 0.017 3.983 8 H 0.141 0.859 9 C -0.216 4.216 10 C 0.287 3.713 11 O -0.456 6.456 12 N -0.332 5.332 13 C -0.077 4.077 14 C 0.138 3.862 15 C -0.583 4.583 16 H 0.077 0.923 17 C -0.191 4.191 18 N -0.568 5.568 19 Si 0.794 3.206 20 H -0.187 1.187 21 H -0.209 1.209 22 H -0.195 1.195 23 C -0.177 4.177 24 C -0.200 4.200 25 S -0.064 6.064 26 C -0.213 4.213 27 H 0.056 0.944 28 H 0.132 0.868 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.048 0.952 37 H 0.017 0.983 38 H 0.077 0.923 39 H 0.126 0.874 40 H 0.137 0.863 41 H 0.127 0.873 42 H 0.156 0.844 43 H 0.128 0.872 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.871 6.193 25.185 26.094 hybrid contribution -1.512 -0.264 -1.751 2.328 sum -4.382 5.930 23.434 24.567 Atomic orbital electron populations 1.23268 0.78763 1.05553 1.01112 1.88106 1.22068 1.23576 1.94400 1.22490 0.93737 0.84420 0.90839 1.24702 0.74575 0.87533 0.84373 1.90650 1.48389 1.16620 1.83150 1.86765 1.74766 1.42578 1.20493 1.22660 0.97410 0.95523 0.82703 0.85933 1.22199 0.89562 1.04388 1.05405 1.20615 0.79133 0.85531 0.86036 1.90676 1.46474 1.21684 1.86789 1.48061 1.64368 1.13913 1.06828 1.22190 1.00794 0.80159 1.04519 1.18848 0.95433 0.93347 0.78557 1.21689 0.96212 1.37318 1.03108 0.92287 1.25881 0.99559 0.96247 0.97462 1.70052 1.26681 1.45062 1.15007 0.85385 0.78802 0.78246 0.78207 1.18711 1.20855 1.19498 1.23068 1.03774 1.01661 0.89245 1.24340 0.90309 1.05639 0.99685 1.87745 1.17996 1.97566 1.03048 1.23958 0.91836 1.07740 0.97800 0.94441 0.86846 0.90563 0.87804 0.91976 0.88714 0.91021 0.90267 0.88582 0.95217 0.98293 0.92342 0.87372 0.86322 0.87251 0.84412 0.87208 0.87031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 10.30 113.37 1.17 1.31 16 2 O -0.36 -8.15 10.05 -136.56 -1.37 -9.52 16 3 C 0.13 2.71 0.79 -10.82 -0.01 2.70 16 4 C 0.45 11.59 5.45 71.24 0.39 11.98 16 5 O -0.50 -13.07 15.06 21.96 0.33 -12.74 16 6 O -0.33 -10.64 8.26 -42.91 -0.35 -10.99 16 7 C 0.08 2.34 2.12 29.85 0.06 2.40 16 8 H 0.12 3.31 6.25 -2.39 -0.01 3.29 16 9 C -0.16 -3.89 9.25 71.98 0.67 -3.22 16 10 C 0.50 21.49 6.97 87.66 0.61 22.10 16 11 O -0.58 -31.15 16.12 15.35 0.25 -30.91 16 12 N -0.60 -25.33 2.86 -851.14 -2.43 -27.76 16 13 C 0.06 1.88 9.99 127.77 1.28 3.15 16 14 C 0.26 13.90 5.22 85.63 0.45 14.35 16 15 C -0.54 -30.82 9.39 25.60 0.24 -30.58 16 16 H 0.06 3.25 7.81 -2.91 -0.02 3.22 16 17 C 0.01 0.44 5.46 84.66 0.46 0.90 16 18 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 19 Si 0.97 44.13 29.54 68.60 2.03 46.16 16 20 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 C -0.14 -1.94 4.98 31.61 0.16 -1.78 16 24 C -0.05 -0.63 7.27 72.71 0.53 -0.10 16 25 S -0.29 -5.69 23.26 -56.49 -1.31 -7.00 16 26 C -0.07 -1.46 6.51 72.41 0.47 -0.99 16 27 H 0.04 0.76 6.51 -2.39 -0.02 0.75 16 28 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.08 0.82 6.16 -2.39 -0.01 0.80 16 30 H 0.10 2.21 6.19 -2.38 -0.01 2.20 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.08 2.31 8.11 -2.39 -0.02 2.29 16 35 H 0.10 2.09 4.43 -2.39 -0.01 2.08 16 36 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 37 H 0.00 -0.07 7.36 -2.39 -0.02 -0.08 16 38 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 39 H 0.11 1.57 7.46 -2.39 -0.02 1.55 16 40 H 0.12 1.17 6.14 -2.39 -0.01 1.15 16 41 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.14 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.11 2.41 7.89 -2.39 -0.02 2.39 16 44 H 0.11 2.75 8.08 -2.38 -0.02 2.73 16 Total: -1.00 -77.59 371.09 4.90 -72.69 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 1.01 Total: 13.41 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: 6.47 Total: 22.22 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -2.15 Total: -83.33 kcal Atomic # 8 Polarization: -63.00 SS G_CDS: -1.15 Total: -64.15 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -5.69 SS G_CDS: -1.31 Total: -7.00 kcal Total: -77.59 4.90 -72.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885742032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.555 kcal (2) G-P(sol) polarization free energy of solvation -77.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds