Wall clock time and date at job start Tue Mar 31 2020 18:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47277 * 2 1 4 4 C 1.46496 * 119.99988 * 90.00045 * 3 2 1 5 5 C 1.50700 * 109.47210 * 269.99601 * 4 3 2 6 6 H 1.08008 * 119.99799 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00203 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00017 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99831 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47376 * 59.99749 * 9 7 5 11 11 H 1.48504 * 109.46895 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46955 * 299.99794 * 9 7 5 13 13 C 1.34778 * 119.99892 * 269.99584 * 3 2 1 14 14 O 1.21279 * 120.00240 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99823 * 0.02562 * 13 3 2 16 16 O 1.45202 * 109.46778 * 179.97438 * 15 13 3 17 17 C 1.34236 * 116.99662 * 179.97438 * 16 15 13 18 18 O 1.20820 * 120.00464 * 0.02562 * 17 16 15 19 19 C 1.50704 * 119.99660 * 179.97438 * 17 16 15 20 20 O 1.42900 * 108.85037 * 325.09312 * 19 17 16 21 21 C 1.42902 * 114.00041 * 305.40420 * 20 19 17 22 22 C 1.52943 * 108.88783 * 206.64977 * 19 17 16 23 23 C 1.55141 * 108.96249 * 209.10698 * 22 19 17 24 24 S 1.83984 * 100.91007 * 41.43895 * 23 22 19 25 25 C 1.53706 * 108.88649 * 83.66986 * 19 17 16 26 26 H 1.09003 * 109.47002 * 60.00214 * 1 2 3 27 27 H 1.09004 * 109.47200 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47027 * 300.00114 * 1 2 3 29 29 H 1.09003 * 109.47378 * 239.99385 * 2 1 3 30 30 H 1.09003 * 109.46792 * 120.00542 * 2 1 3 31 31 H 1.09008 * 109.46760 * 150.00129 * 4 3 2 32 32 H 1.08994 * 109.47723 * 30.00021 * 4 3 2 33 33 H 0.96999 * 120.00186 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47197 * 299.99640 * 15 13 3 35 35 H 1.08993 * 109.47495 * 59.99696 * 15 13 3 36 36 H 1.08999 * 109.47526 * 304.50809 * 21 20 19 37 37 H 1.08998 * 109.46660 * 64.50939 * 21 20 19 38 38 H 1.09006 * 109.47043 * 184.50638 * 21 20 19 39 39 H 1.08996 * 109.60218 * 329.04168 * 22 19 17 40 40 H 1.09001 * 109.59899 * 89.17311 * 22 19 17 41 41 H 1.09004 * 111.13541 * 283.52837 * 23 22 19 42 42 H 1.08997 * 111.17054 * 159.36403 * 23 22 19 43 43 H 1.08997 * 110.33924 * 242.49118 * 25 19 17 44 44 H 1.08996 * 110.34127 * 4.64299 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 1.2687 5 6 1.0068 2.7822 1.7037 6 1 0.1157 2.7247 1.0960 7 6 0.9953 3.5057 2.8773 8 7 2.0804 3.5761 3.6170 9 14 -0.5615 4.3858 3.4168 10 1 -1.6536 3.3954 3.5952 11 1 -0.3136 5.0870 4.7022 12 1 -0.9548 5.3752 2.3817 13 6 2.2431 2.0164 -1.1672 14 8 2.6469 3.1600 -1.1673 15 6 1.9914 1.3061 -2.4723 16 8 2.3056 2.1959 -3.5759 17 6 2.1346 1.7121 -4.8164 18 8 1.7352 0.5828 -4.9747 19 6 2.4397 2.5779 -6.0115 20 8 2.0961 3.9300 -5.7019 21 6 0.7488 4.1000 -5.2569 22 6 1.5864 2.1111 -7.1918 23 6 2.3412 2.4179 -8.5121 24 16 4.0573 1.9411 -8.0510 25 6 3.9458 2.5029 -6.3087 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.0645 2.7984 1.1383 32 1 2.5506 1.3452 2.0284 33 1 2.0723 4.0847 4.4429 34 1 2.6213 0.4184 -2.5302 35 1 0.9434 1.0124 -2.5299 36 1 0.0658 3.6911 -6.0015 37 1 0.6101 3.5772 -4.3106 38 1 0.5429 5.1616 -5.1191 39 1 1.4086 1.0386 -7.1129 40 1 0.6326 2.6386 -7.1847 41 1 2.2815 3.4773 -8.7619 42 1 1.9688 1.8021 -9.3307 43 1 4.4034 3.4859 -6.1976 44 1 4.4275 1.7843 -5.6457 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885751828.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:18 Heat of formation + Delta-G solvation = -170.322297 kcal Electronic energy + Delta-G solvation = -27365.307561 eV Core-core repulsion = 23409.242256 eV Total energy + Delta-G solvation = -3956.065306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.41642 -40.82604 -39.52995 -37.90634 -37.03246 -35.08345 -34.89723 -31.75443 -31.41399 -30.62816 -28.61573 -27.61390 -26.82529 -24.92800 -24.28007 -23.69202 -21.18218 -20.31697 -19.71937 -18.76203 -18.42726 -18.17420 -18.00246 -17.62090 -17.10553 -16.90575 -16.39685 -16.27603 -15.88155 -15.39025 -15.15437 -14.83023 -14.69216 -14.51801 -14.37373 -14.01567 -14.00249 -13.71380 -13.43941 -13.34730 -13.28469 -13.11514 -13.05150 -13.03074 -12.73383 -12.56161 -12.33510 -12.21799 -11.99870 -11.84933 -11.79865 -11.67308 -11.26222 -10.89516 -10.73598 -10.63220 -9.57394 -8.84480 -8.22582 -6.35758 0.56031 0.67412 1.01148 1.14302 1.36357 1.40321 1.47139 1.58474 2.19361 2.38503 2.45560 3.07289 3.08516 3.24141 3.35967 3.38292 3.72931 3.82034 3.89811 3.99038 4.10663 4.13527 4.16191 4.33349 4.40051 4.41135 4.55569 4.62091 4.68817 4.75152 4.83532 4.86733 4.95166 5.01374 5.04445 5.20362 5.45291 5.55693 5.67344 5.78735 6.04751 6.30384 6.58906 6.72461 7.19747 7.36733 8.85022 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.020453 B = 0.002836 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.632587 B = 9869.315716 C =10242.766259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.097 3.903 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.537 4.537 6 H 0.057 0.943 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.963 3.037 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.500 3.500 14 O -0.574 6.574 15 C 0.056 3.944 16 O -0.335 6.335 17 C 0.443 3.557 18 O -0.501 6.501 19 C 0.133 3.867 20 O -0.365 6.365 21 C 0.010 3.990 22 C -0.150 4.150 23 C -0.047 4.047 24 S -0.294 6.294 25 C -0.060 4.060 26 H 0.049 0.951 27 H 0.094 0.906 28 H 0.044 0.956 29 H 0.102 0.898 30 H 0.086 0.914 31 H -0.001 1.001 32 H 0.030 0.970 33 H 0.267 0.733 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.078 0.922 37 H 0.031 0.969 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.140 0.860 43 H 0.123 0.877 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.804 -7.192 -23.367 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.024 4.024 3 N -0.327 5.327 4 C 0.141 3.859 5 C -0.576 4.576 6 H 0.075 0.925 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.788 3.212 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.287 3.713 14 O -0.454 6.454 15 C -0.021 4.021 16 O -0.250 6.250 17 C 0.284 3.716 18 O -0.389 6.389 19 C 0.090 3.910 20 O -0.284 6.284 21 C -0.085 4.085 22 C -0.188 4.188 23 C -0.195 4.195 24 S -0.068 6.068 25 C -0.208 4.208 26 H 0.068 0.932 27 H 0.113 0.887 28 H 0.063 0.937 29 H 0.120 0.880 30 H 0.104 0.896 31 H 0.017 0.983 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.158 0.842 43 H 0.142 0.858 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.595 -7.249 -23.837 25.050 hybrid contribution -1.467 0.926 1.861 2.544 sum -4.063 -6.323 -21.976 23.226 Atomic orbital electron populations 1.22181 0.95173 1.03175 1.01833 1.21873 0.95547 0.80661 1.04362 1.48211 1.63651 1.15183 1.05666 1.18833 0.95711 0.91756 0.79611 1.21654 0.97861 1.31592 1.06446 0.92453 1.25820 0.99751 0.96950 0.96560 1.70035 1.29576 1.42396 1.14856 0.85531 0.79529 0.78818 0.77337 1.18428 1.20548 1.20358 1.20466 0.78562 0.86561 0.85739 1.90700 1.47374 1.19649 1.87677 1.22939 1.04752 0.92288 0.82105 1.86705 1.78357 1.45178 1.14792 1.24867 0.74131 0.87631 0.84996 1.90657 1.41866 1.19946 1.86430 1.22325 0.96482 0.82440 0.89773 1.88113 1.31466 1.22872 1.85937 1.23237 0.82021 1.04780 0.98490 1.23016 0.99966 1.05387 0.90475 1.24442 0.89052 1.06681 0.99293 1.88050 1.24575 1.82828 1.11381 1.23875 0.93436 1.07331 0.96120 0.93165 0.88707 0.93656 0.87982 0.89554 0.98290 0.95238 0.92445 0.85792 0.86385 0.90386 0.95077 0.87074 0.87550 0.86325 0.86902 0.84173 0.85825 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.47 10.24 71.98 0.74 -3.74 16 2 C 0.10 2.80 5.97 86.38 0.52 3.32 16 3 N -0.59 -24.49 2.46 -826.17 -2.03 -26.52 16 4 C 0.26 13.80 5.20 85.63 0.45 14.24 16 5 C -0.54 -30.15 8.92 25.60 0.23 -29.92 16 6 H 0.06 3.16 7.42 -2.91 -0.02 3.14 16 7 C 0.01 0.46 5.46 84.65 0.46 0.93 16 8 N -0.93 -55.65 13.29 21.45 0.28 -55.36 16 9 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 10 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 13 C 0.50 20.87 7.75 87.66 0.68 21.55 16 14 O -0.57 -30.37 16.08 15.78 0.25 -30.11 16 15 C 0.06 1.68 4.50 71.24 0.32 2.00 16 16 O -0.34 -10.70 8.31 -42.69 -0.35 -11.06 16 17 C 0.44 11.55 5.27 71.24 0.38 11.93 16 18 O -0.50 -13.46 15.28 21.98 0.34 -13.12 16 19 C 0.13 2.80 0.97 -11.32 -0.01 2.79 16 20 O -0.37 -8.44 9.99 -134.96 -1.35 -9.79 16 21 C 0.01 0.20 10.23 113.37 1.16 1.36 16 22 C -0.15 -2.19 5.27 31.31 0.17 -2.03 16 23 C -0.05 -0.55 7.52 72.72 0.55 0.00 16 24 S -0.29 -5.45 23.23 -56.49 -1.31 -6.77 16 25 C -0.06 -1.23 6.76 72.22 0.49 -0.74 16 26 H 0.05 1.31 7.22 -2.39 -0.02 1.29 16 27 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.04 1.54 7.26 -2.39 -0.02 1.52 16 29 H 0.10 2.13 6.44 -2.39 -0.02 2.12 16 30 H 0.09 2.41 7.89 -2.39 -0.02 2.39 16 31 H 0.00 -0.06 7.42 -2.38 -0.02 -0.08 16 32 H 0.03 1.57 7.89 -2.39 -0.02 1.55 16 33 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 34 H 0.12 3.01 7.39 -2.39 -0.02 2.99 16 35 H 0.12 3.05 7.18 -2.39 -0.02 3.03 16 36 H 0.08 1.04 5.95 -2.39 -0.01 1.02 16 37 H 0.03 0.78 6.34 -2.39 -0.02 0.76 16 38 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.11 1.72 6.78 -2.39 -0.02 1.70 16 40 H 0.12 1.28 5.71 -2.39 -0.01 1.27 16 41 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.14 0.96 8.14 -2.39 -0.02 0.95 16 43 H 0.12 2.52 7.93 -2.39 -0.02 2.50 16 44 H 0.11 2.30 7.63 -2.39 -0.02 2.28 16 Total: -1.00 -76.54 370.90 4.98 -71.56 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 1.01 Total: 13.17 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 6.11 Total: 21.69 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -1.74 Total: -81.88 kcal Atomic # 8 Polarization: -62.97 SS G_CDS: -1.11 Total: -64.09 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -5.45 SS G_CDS: -1.31 Total: -6.77 kcal Total: -76.54 4.98 -71.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885751828.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.765 kcal (2) G-P(sol) polarization free energy of solvation -76.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds