Wall clock time and date at job start Tue Mar 31 2020 17:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47004 * 2 1 4 4 C 1.50710 * 109.46754 * 119.99480 * 2 1 3 5 5 H 1.07998 * 119.99852 * 120.00095 * 4 2 1 6 6 C 1.37879 * 119.99961 * 300.00069 * 4 2 1 7 7 N 1.31514 * 119.99872 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99910 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47454 * 89.99785 * 8 6 4 10 10 H 1.48504 * 109.47140 * 210.00188 * 8 6 4 11 11 H 1.48507 * 109.47426 * 329.99838 * 8 6 4 12 12 C 1.50692 * 109.47460 * 239.99349 * 2 1 3 13 13 O 1.21284 * 120.00023 * 240.00444 * 12 2 1 14 14 N 1.34779 * 120.00237 * 60.00048 * 12 2 1 15 15 C 1.46496 * 120.00320 * 180.02562 * 14 12 2 16 16 H 1.09002 * 109.47260 * 34.99887 * 15 14 12 17 17 C 1.52999 * 109.47135 * 275.00030 * 15 14 12 18 18 O 1.42903 * 109.47256 * 295.00379 * 17 15 14 19 19 C 1.50705 * 109.47154 * 155.00218 * 15 14 12 20 20 C 1.38258 * 119.99700 * 24.99717 * 19 15 14 21 21 C 1.38212 * 119.99248 * 180.02562 * 20 19 15 22 22 C 1.38257 * 120.00374 * 359.97438 * 21 20 19 23 23 C 1.38211 * 120.00153 * 359.95259 * 22 21 20 24 24 C 1.38208 * 119.99760 * 204.72608 * 19 15 14 25 25 C 1.50703 * 120.00178 * 359.97438 * 24 19 15 26 26 F 1.39907 * 109.47180 * 179.97438 * 25 24 19 27 27 F 1.39897 * 109.47124 * 300.00126 * 25 24 19 28 28 F 1.39893 * 109.47042 * 59.99968 * 25 24 19 29 29 H 1.08996 * 109.47559 * 300.00484 * 1 2 3 30 30 H 1.08999 * 109.46934 * 60.01102 * 1 2 3 31 31 H 1.09008 * 109.46988 * 180.02562 * 1 2 3 32 32 H 0.96999 * 119.99630 * 180.02562 * 7 6 4 33 33 H 0.97000 * 119.99742 * 0.02562 * 14 12 2 34 34 H 1.08997 * 109.47286 * 174.99939 * 17 15 14 35 35 H 1.09008 * 109.47201 * 54.99719 * 17 15 14 36 36 H 0.96700 * 114.00311 * 180.02562 * 18 17 15 37 37 H 1.07990 * 120.00211 * 359.97438 * 20 19 15 38 38 H 1.08006 * 119.99764 * 179.97438 * 21 20 19 39 39 H 1.08005 * 119.99959 * 179.97438 * 22 21 20 40 40 H 1.07993 * 120.00308 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6991 -0.2392 2.4829 7 7 2.1378 -0.8588 3.5567 8 14 0.6246 1.2792 2.6540 9 1 -0.8030 0.8729 2.6996 10 1 0.9757 1.9955 3.9066 11 1 0.8469 2.1766 1.4918 12 6 2.0324 -0.7105 -1.2303 13 8 2.7296 -1.6966 -1.1189 14 7 1.7069 -0.2502 -2.4545 15 6 2.1948 -0.9412 -3.6506 16 1 2.2311 -2.0140 -3.4610 17 6 3.5975 -0.4364 -3.9946 18 8 3.5314 0.9445 -4.3563 19 6 1.2649 -0.6661 -4.8042 20 6 0.4921 0.4803 -4.8108 21 6 -0.3611 0.7323 -5.8686 22 6 -0.4412 -0.1617 -6.9202 23 6 0.3325 -1.3069 -6.9143 24 6 1.1889 -1.5569 -5.8581 25 6 2.0363 -2.8032 -5.8540 26 9 1.7861 -3.5411 -7.0160 27 9 3.3886 -2.4475 -5.8089 28 9 1.7204 -3.5781 -4.7329 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.9031 -0.5275 4.4377 33 1 1.1495 0.5386 -2.5436 34 1 3.9961 -1.0121 -4.8299 35 1 4.2487 -0.5543 -3.1284 36 1 4.3867 1.3318 -4.5879 37 1 0.5544 1.1783 -3.9892 38 1 -0.9651 1.6276 -5.8737 39 1 -1.1083 0.0351 -7.7466 40 1 0.2702 -2.0050 -7.7359 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886568925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:19 Heat of formation + Delta-G solvation = -194.431289 kcal Electronic energy + Delta-G solvation = -29762.153874 eV Core-core repulsion = 25127.742433 eV Total energy + Delta-G solvation = -4634.411442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.39475 -47.91899 -47.79455 -40.29249 -38.80613 -36.84686 -34.51103 -33.83432 -32.48349 -31.56677 -30.77178 -28.47204 -26.15833 -25.13418 -24.03358 -23.22083 -22.19491 -20.76387 -19.60683 -18.73876 -18.65762 -18.39457 -17.42798 -16.82076 -16.72949 -15.72667 -15.59821 -15.25565 -15.05571 -14.95857 -14.70502 -14.57519 -14.41322 -14.25665 -13.97813 -13.91133 -13.71149 -13.52004 -13.21306 -13.07054 -12.88438 -12.73410 -12.35820 -12.24038 -11.89283 -11.65831 -11.41536 -11.16791 -10.97529 -10.60458 -10.30134 -9.92814 -9.63774 -9.49097 -9.18175 -9.09704 -8.73519 -8.64875 -8.55956 -6.04375 -4.04625 0.65497 0.98027 2.46585 3.20395 3.23602 3.31015 3.36718 3.48744 3.54107 3.60916 3.82879 4.20433 4.24653 4.34475 4.38320 4.54319 4.66751 4.98549 5.10055 5.19029 5.25814 5.29270 5.41513 5.50865 5.63068 5.75411 5.81734 5.89521 6.06669 6.10163 6.11757 6.31772 6.43624 6.47107 6.71603 6.86183 7.16208 7.53819 7.60341 8.06516 8.55144 9.04181 9.15842 9.54437 11.08575 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.017341 B = 0.003793 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.257947 B = 7379.795173 C = 7953.686393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.003 4.003 3 H 0.053 0.947 4 C -0.505 4.505 5 H 0.094 0.906 6 C 0.070 3.930 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.267 1.267 12 C 0.530 3.470 13 O -0.529 6.529 14 N -0.734 5.734 15 C 0.169 3.831 16 H 0.115 0.885 17 C 0.052 3.948 18 O -0.566 6.566 19 C -0.021 4.021 20 C -0.100 4.100 21 C -0.083 4.083 22 C -0.127 4.127 23 C -0.071 4.071 24 C -0.182 4.182 25 C 0.505 3.495 26 F -0.178 7.178 27 F -0.171 7.171 28 F -0.168 7.168 29 H 0.049 0.951 30 H 0.032 0.968 31 H 0.058 0.942 32 H 0.264 0.736 33 H 0.397 0.603 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.377 0.623 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.094 3.676 -24.875 25.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 H 0.071 0.929 4 C -0.543 4.543 5 H 0.112 0.888 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.714 3.286 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.319 3.681 13 O -0.403 6.403 14 N -0.390 5.390 15 C 0.063 3.937 16 H 0.133 0.867 17 C -0.027 4.027 18 O -0.371 6.371 19 C -0.022 4.022 20 C -0.118 4.118 21 C -0.101 4.101 22 C -0.145 4.145 23 C -0.090 4.090 24 C -0.183 4.183 25 C 0.451 3.549 26 F -0.159 7.159 27 F -0.153 7.153 28 F -0.150 7.150 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.233 0.767 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.223 0.777 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.177 2.791 -24.421 24.933 hybrid contribution -0.131 1.060 0.086 1.071 sum -4.308 3.850 -24.335 25.012 Atomic orbital electron populations 1.22124 0.97315 1.01593 0.99206 1.19307 0.93215 0.97579 0.92373 0.92926 1.20935 1.32118 1.14104 0.87171 0.88831 1.24976 0.95830 0.96554 0.95754 1.69882 1.45444 1.40185 0.97856 0.86919 0.80725 0.83849 0.77074 1.20519 1.22318 1.19252 1.21356 0.78810 0.84189 0.83777 1.90590 1.37107 1.26184 1.86370 1.46299 1.55629 1.32485 1.04623 1.20078 0.90744 0.99425 0.83456 0.86711 1.23018 0.96345 0.82970 1.00364 1.86431 1.35483 1.24565 1.90623 1.19628 0.95266 0.93524 0.93798 1.20918 0.95591 0.96153 0.99129 1.21390 0.96753 0.98947 0.93000 1.21133 0.99892 0.94168 0.99278 1.20942 0.93803 0.97642 0.96572 1.19742 1.03171 0.95805 0.99632 1.18376 0.78623 0.84111 0.73764 1.93156 1.94012 1.79148 1.49593 1.93100 1.34952 1.91315 1.95907 1.93240 1.92577 1.76968 1.52181 0.93219 0.94920 0.92277 0.92571 0.76693 0.91128 0.92007 0.77704 0.84756 0.84919 0.84891 0.84451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.57 37.16 0.32 -2.66 16 2 C 0.00 -0.07 2.23 -92.92 -0.21 -0.28 16 3 H 0.05 1.20 7.20 -51.93 -0.37 0.83 16 4 C -0.51 -14.63 8.96 -34.43 -0.31 -14.94 16 5 H 0.09 3.09 7.00 -52.49 -0.37 2.72 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 7 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 8 Si 0.88 21.30 24.37 -169.99 -4.14 17.16 16 9 H -0.28 -6.49 6.87 56.52 0.39 -6.10 16 10 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.27 -5.98 6.53 56.52 0.37 -5.61 16 12 C 0.53 11.65 7.11 -10.99 -0.08 11.57 16 13 O -0.53 -13.58 15.12 5.55 0.08 -13.49 16 14 N -0.73 -12.40 4.84 -54.93 -0.27 -12.66 16 15 C 0.17 2.58 1.93 -69.08 -0.13 2.45 16 16 H 0.12 1.99 5.20 -51.93 -0.27 1.72 16 17 C 0.05 0.72 6.65 37.16 0.25 0.97 16 18 O -0.57 -6.90 12.87 -35.23 -0.45 -7.35 16 19 C -0.02 -0.27 4.62 -104.62 -0.48 -0.75 16 20 C -0.10 -1.08 8.97 -39.58 -0.36 -1.44 16 21 C -0.08 -0.70 10.05 -39.58 -0.40 -1.10 16 22 C -0.13 -0.99 10.05 -39.58 -0.40 -1.39 16 23 C -0.07 -0.66 9.43 -39.58 -0.37 -1.03 16 24 C -0.18 -2.12 5.37 -104.62 -0.56 -2.68 16 25 C 0.51 6.20 2.83 36.01 0.10 6.31 16 26 F -0.18 -1.97 15.97 2.25 0.04 -1.93 16 27 F -0.17 -2.13 13.56 2.25 0.03 -2.10 16 28 F -0.17 -2.41 15.33 2.25 0.03 -2.37 16 29 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 30 H 0.03 0.53 7.56 -51.93 -0.39 0.13 16 31 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.40 5.74 5.63 -40.82 -0.23 5.51 16 34 H 0.07 0.89 4.91 -51.93 -0.25 0.64 16 35 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 36 H 0.38 3.03 9.12 45.56 0.42 3.45 16 37 H 0.13 1.38 6.07 -52.49 -0.32 1.06 16 38 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 39 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 40 H 0.14 1.00 7.16 -52.49 -0.38 0.63 16 LS Contribution 332.56 15.07 5.01 5.01 Total: -1.00 -34.57 332.56 -4.83 -39.40 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -3.21 Total: 8.34 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -2.73 Total: -3.03 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.51 Total: -39.62 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.37 Total: -20.84 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 0.10 Total: -6.41 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.14 Total: 17.16 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.57 -4.83 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886568925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.036 kcal (2) G-P(sol) polarization free energy of solvation -34.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds