Wall clock time and date at job start Tue Mar 31 2020 17:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47004 * 2 1 4 4 C 1.50710 * 109.46754 * 119.99480 * 2 1 3 5 5 H 1.07998 * 119.99852 * 120.00095 * 4 2 1 6 6 C 1.37879 * 119.99961 * 300.00069 * 4 2 1 7 7 N 1.31514 * 119.99872 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99910 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47454 * 89.99785 * 8 6 4 10 10 H 1.48504 * 109.47140 * 210.00188 * 8 6 4 11 11 H 1.48507 * 109.47426 * 329.99838 * 8 6 4 12 12 C 1.50692 * 109.47460 * 239.99349 * 2 1 3 13 13 O 1.21284 * 120.00023 * 240.00444 * 12 2 1 14 14 N 1.34779 * 120.00237 * 60.00048 * 12 2 1 15 15 C 1.46496 * 120.00320 * 180.02562 * 14 12 2 16 16 H 1.09002 * 109.47260 * 34.99887 * 15 14 12 17 17 C 1.52999 * 109.47135 * 275.00030 * 15 14 12 18 18 O 1.42903 * 109.47256 * 295.00379 * 17 15 14 19 19 C 1.50705 * 109.47154 * 155.00218 * 15 14 12 20 20 C 1.38258 * 119.99700 * 24.99717 * 19 15 14 21 21 C 1.38212 * 119.99248 * 180.02562 * 20 19 15 22 22 C 1.38257 * 120.00374 * 359.97438 * 21 20 19 23 23 C 1.38211 * 120.00153 * 359.95259 * 22 21 20 24 24 C 1.38208 * 119.99760 * 204.72608 * 19 15 14 25 25 C 1.50703 * 120.00178 * 359.97438 * 24 19 15 26 26 F 1.39907 * 109.47180 * 179.97438 * 25 24 19 27 27 F 1.39897 * 109.47124 * 300.00126 * 25 24 19 28 28 F 1.39893 * 109.47042 * 59.99968 * 25 24 19 29 29 H 1.08996 * 109.47559 * 300.00484 * 1 2 3 30 30 H 1.08999 * 109.46934 * 60.01102 * 1 2 3 31 31 H 1.09008 * 109.46988 * 180.02562 * 1 2 3 32 32 H 0.96999 * 119.99630 * 180.02562 * 7 6 4 33 33 H 0.97000 * 119.99742 * 0.02562 * 14 12 2 34 34 H 1.08997 * 109.47286 * 174.99939 * 17 15 14 35 35 H 1.09008 * 109.47201 * 54.99719 * 17 15 14 36 36 H 0.96700 * 114.00311 * 180.02562 * 18 17 15 37 37 H 1.07990 * 120.00211 * 359.97438 * 20 19 15 38 38 H 1.08006 * 119.99764 * 179.97438 * 21 20 19 39 39 H 1.08005 * 119.99959 * 179.97438 * 22 21 20 40 40 H 1.07993 * 120.00308 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6991 -0.2392 2.4829 7 7 2.1378 -0.8588 3.5567 8 14 0.6246 1.2792 2.6540 9 1 -0.8030 0.8729 2.6996 10 1 0.9757 1.9955 3.9066 11 1 0.8469 2.1766 1.4918 12 6 2.0324 -0.7105 -1.2303 13 8 2.7296 -1.6966 -1.1189 14 7 1.7069 -0.2502 -2.4545 15 6 2.1948 -0.9412 -3.6506 16 1 2.2311 -2.0140 -3.4610 17 6 3.5975 -0.4364 -3.9946 18 8 3.5314 0.9445 -4.3563 19 6 1.2649 -0.6661 -4.8042 20 6 0.4921 0.4803 -4.8108 21 6 -0.3611 0.7323 -5.8686 22 6 -0.4412 -0.1617 -6.9202 23 6 0.3325 -1.3069 -6.9143 24 6 1.1889 -1.5569 -5.8581 25 6 2.0363 -2.8032 -5.8540 26 9 1.7861 -3.5411 -7.0160 27 9 3.3886 -2.4475 -5.8089 28 9 1.7204 -3.5781 -4.7329 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.9031 -0.5275 4.4377 33 1 1.1495 0.5386 -2.5436 34 1 3.9961 -1.0121 -4.8299 35 1 4.2487 -0.5543 -3.1284 36 1 4.3867 1.3318 -4.5879 37 1 0.5544 1.1783 -3.9892 38 1 -0.9651 1.6276 -5.8737 39 1 -1.1083 0.0351 -7.7466 40 1 0.2702 -2.0050 -7.7359 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886568925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:18 Heat of formation + Delta-G solvation = -221.579354 kcal Electronic energy + Delta-G solvation = -29763.331103 eV Core-core repulsion = 25127.742433 eV Total energy + Delta-G solvation = -4635.588670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.36641 -48.86005 -48.81574 -41.40950 -40.15271 -37.95603 -35.84087 -35.75342 -33.62217 -33.10593 -31.98265 -29.58514 -27.11941 -27.02205 -25.39025 -24.39868 -23.24908 -21.88583 -21.10723 -19.70998 -19.61721 -19.42913 -18.81335 -18.48193 -18.05204 -17.16714 -16.79364 -16.39798 -16.26947 -16.15551 -15.85169 -15.64337 -15.45529 -15.34932 -15.24578 -15.01343 -14.95698 -14.74229 -14.52722 -14.42204 -14.02453 -13.98460 -13.70037 -13.48636 -13.34643 -12.91483 -12.76447 -12.53317 -12.23057 -12.14128 -12.07054 -11.46778 -11.23369 -11.01820 -10.77356 -10.51089 -10.26433 -10.15633 -9.84100 -8.26649 -6.34890 -0.09561 0.25531 1.33767 1.40728 1.51964 1.55130 1.79287 2.15746 2.35124 2.51153 2.61288 2.92177 3.06745 3.19841 3.28050 3.36411 3.78950 4.01933 4.02716 4.09138 4.31805 4.36036 4.40741 4.42787 4.46985 4.58551 4.60398 4.66682 4.78050 4.87726 4.99191 5.17270 5.27406 5.39292 5.43441 5.51191 5.51819 5.81174 6.25144 6.61422 6.78926 6.82074 7.25594 7.42393 8.91110 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.017341 B = 0.003793 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.257947 B = 7379.795173 C = 7953.686393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.006 4.006 3 H 0.071 0.929 4 C -0.522 4.522 5 H 0.029 0.971 6 C 0.006 3.994 7 N -0.953 5.953 8 Si 0.960 3.040 9 H -0.259 1.259 10 H -0.300 1.300 11 H -0.229 1.229 12 C 0.529 3.471 13 O -0.580 6.580 14 N -0.710 5.710 15 C 0.165 3.835 16 H 0.087 0.913 17 C 0.062 3.938 18 O -0.566 6.566 19 C -0.042 4.042 20 C -0.111 4.111 21 C -0.074 4.074 22 C -0.115 4.115 23 C -0.073 4.073 24 C -0.195 4.195 25 C 0.501 3.499 26 F -0.171 7.171 27 F -0.177 7.177 28 F -0.187 7.187 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.267 0.733 33 H 0.412 0.588 34 H 0.083 0.917 35 H 0.031 0.969 36 H 0.395 0.605 37 H 0.139 0.861 38 H 0.167 0.833 39 H 0.170 0.830 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.182 7.185 -28.044 29.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 H 0.088 0.912 4 C -0.560 4.560 5 H 0.047 0.953 6 C -0.190 4.190 7 N -0.593 5.593 8 Si 0.785 3.215 9 H -0.185 1.185 10 H -0.227 1.227 11 H -0.152 1.152 12 C 0.318 3.682 13 O -0.459 6.459 14 N -0.365 5.365 15 C 0.060 3.940 16 H 0.105 0.895 17 C -0.017 4.017 18 O -0.373 6.373 19 C -0.043 4.043 20 C -0.129 4.129 21 C -0.092 4.092 22 C -0.132 4.132 23 C -0.090 4.090 24 C -0.196 4.196 25 C 0.447 3.553 26 F -0.152 7.152 27 F -0.158 7.158 28 F -0.168 7.168 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.252 0.748 34 H 0.101 0.899 35 H 0.050 0.950 36 H 0.245 0.755 37 H 0.157 0.843 38 H 0.184 0.816 39 H 0.188 0.812 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.275 6.336 -27.669 29.303 hybrid contribution 0.901 -0.114 0.949 1.314 sum -6.374 6.222 -26.720 28.165 Atomic orbital electron populations 1.22029 0.94329 1.01699 1.01664 1.19254 0.95519 0.97457 0.90546 0.91177 1.21077 1.31733 1.12847 0.90336 0.95305 1.26046 0.97460 1.00783 0.94731 1.70082 1.47618 1.42850 0.98732 0.85698 0.78781 0.78945 0.78091 1.18508 1.22739 1.15232 1.21166 0.78403 0.83543 0.85118 1.90578 1.39559 1.28515 1.87226 1.45949 1.54513 1.32381 1.03675 1.20068 0.92429 0.97791 0.83753 0.89524 1.22765 0.95128 0.84295 0.99553 1.86374 1.37171 1.23304 1.90476 1.19396 0.96336 0.95310 0.93226 1.21071 0.95983 0.95458 1.00381 1.21783 0.95683 0.99915 0.91792 1.21602 0.99003 0.92758 0.99851 1.21263 0.93033 0.98657 0.96095 1.19764 1.04145 0.95153 1.00581 1.18626 0.78686 0.84608 0.73388 1.93159 1.93941 1.79121 1.49001 1.93073 1.35501 1.91330 1.95911 1.93204 1.92700 1.77592 1.53326 0.93325 0.89620 0.93574 0.92392 0.74833 0.89934 0.95038 0.75512 0.84335 0.81579 0.81236 0.82693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.36 8.57 71.98 0.62 -4.75 16 2 C -0.01 -0.29 2.23 -12.29 -0.03 -0.31 16 3 H 0.07 3.03 7.20 -2.39 -0.02 3.01 16 4 C -0.52 -31.61 8.96 25.60 0.23 -31.38 16 5 H 0.03 2.06 7.00 -2.91 -0.02 2.04 16 6 C 0.01 0.36 5.45 84.66 0.46 0.82 16 7 N -0.95 -61.71 13.96 21.45 0.30 -61.41 16 8 Si 0.96 43.09 24.37 68.60 1.67 44.76 16 9 H -0.26 -10.84 6.87 99.48 0.68 -10.16 16 10 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 11 H -0.23 -8.84 6.53 99.48 0.65 -8.20 16 12 C 0.53 23.82 7.11 87.65 0.62 24.44 16 13 O -0.58 -31.98 15.12 -3.04 -0.05 -32.03 16 14 N -0.71 -23.51 4.84 -446.10 -2.16 -25.66 16 15 C 0.16 5.09 1.93 44.25 0.09 5.17 16 16 H 0.09 3.18 5.20 -2.39 -0.01 3.17 16 17 C 0.06 1.75 6.65 71.98 0.48 2.22 16 18 O -0.57 -12.94 12.87 -148.98 -1.92 -14.86 16 19 C -0.04 -1.00 4.62 -19.87 -0.09 -1.09 16 20 C -0.11 -2.02 8.97 22.27 0.20 -1.82 16 21 C -0.07 -0.87 10.05 22.27 0.22 -0.65 16 22 C -0.11 -1.21 10.05 22.27 0.22 -0.99 16 23 C -0.07 -1.09 9.43 22.27 0.21 -0.88 16 24 C -0.19 -4.24 5.37 -19.87 -0.11 -4.34 16 25 C 0.50 12.31 2.83 71.24 0.20 12.52 16 26 F -0.17 -3.67 15.97 44.97 0.72 -2.95 16 27 F -0.18 -4.49 13.56 44.97 0.61 -3.88 16 28 F -0.19 -5.62 15.33 44.97 0.69 -4.93 16 29 H 0.05 1.88 3.27 -2.39 -0.01 1.87 16 30 H 0.09 2.36 7.56 -2.39 -0.02 2.35 16 31 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 33 H 0.41 10.82 5.63 -92.71 -0.52 10.30 16 34 H 0.08 2.13 4.91 -2.39 -0.01 2.12 16 35 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.40 5.70 9.12 -74.06 -0.68 5.02 16 37 H 0.14 2.30 6.07 -2.92 -0.02 2.29 16 38 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 39 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 40 H 0.16 1.72 7.16 -2.91 -0.02 1.70 16 Total: -1.00 -82.84 332.56 3.06 -79.79 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -0.14 Total: 22.19 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 3.33 Total: -1.03 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -1.86 Total: -87.08 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -1.96 Total: -46.88 kcal Atomic # 9 Polarization: -13.77 SS G_CDS: 2.02 Total: -11.75 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.67 Total: 44.76 kcal Total: -82.84 3.06 -79.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886568925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.791 kcal (2) G-P(sol) polarization free energy of solvation -82.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds