Wall clock time and date at job start Tue Mar 31 2020 17:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47155 * 2 1 4 4 C 1.50693 * 109.47356 * 239.99692 * 2 1 3 5 5 H 1.07998 * 120.00442 * 240.00469 * 4 2 1 6 6 C 1.37884 * 119.99973 * 59.99757 * 4 2 1 7 7 N 1.31515 * 119.99958 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00023 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47299 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47213 * 120.00047 * 8 6 4 11 11 H 1.48506 * 109.47111 * 240.00301 * 8 6 4 12 12 C 1.50700 * 109.46992 * 119.99680 * 2 1 3 13 13 O 1.21273 * 119.99994 * 120.00246 * 12 2 1 14 14 N 1.34778 * 120.00087 * 300.00298 * 12 2 1 15 15 C 1.46496 * 120.00304 * 180.02562 * 14 12 2 16 16 H 1.09002 * 109.46587 * 326.81872 * 15 14 12 17 17 C 1.52992 * 109.47492 * 86.81917 * 15 14 12 18 18 O 1.42895 * 109.47148 * 64.28026 * 17 15 14 19 19 C 1.50705 * 109.47499 * 206.82380 * 15 14 12 20 20 C 1.38256 * 119.99538 * 329.42609 * 19 15 14 21 21 C 1.38216 * 119.99955 * 179.80446 * 20 19 15 22 22 C 1.38256 * 119.99889 * 0.42598 * 21 20 19 23 23 C 1.38222 * 119.99805 * 359.80606 * 22 21 20 24 24 C 1.38207 * 119.99984 * 149.69762 * 19 15 14 25 25 C 1.50699 * 120.00566 * 359.97438 * 24 19 15 26 26 F 1.39898 * 109.47129 * 181.65024 * 25 24 19 27 27 F 1.39903 * 109.46935 * 301.65651 * 25 24 19 28 28 F 1.39907 * 109.46684 * 61.65346 * 25 24 19 29 29 H 1.09003 * 109.47001 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47558 * 300.00389 * 1 2 3 31 31 H 1.09003 * 109.47460 * 60.00131 * 1 2 3 32 32 H 0.96993 * 119.99882 * 179.97438 * 7 6 4 33 33 H 0.97003 * 120.00266 * 359.97438 * 14 12 2 34 34 H 1.09002 * 109.47259 * 184.27698 * 17 15 14 35 35 H 1.08998 * 109.47572 * 304.28069 * 17 15 14 36 36 H 0.96704 * 114.00379 * 180.02562 * 18 17 15 37 37 H 1.08006 * 120.00259 * 0.02562 * 20 19 15 38 38 H 1.08003 * 120.00133 * 180.20834 * 21 20 19 39 39 H 1.07996 * 120.00349 * 179.78275 * 22 21 20 40 40 H 1.07998 * 119.99760 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 3.1465 -2.2871 -3.6036 10 1 1.1661 -1.5869 -4.8159 11 1 3.1467 -0.1875 -4.8164 12 6 2.0323 -0.7103 1.2305 13 8 2.7295 -1.6963 1.1193 14 7 1.7066 -0.2499 2.4546 15 6 2.1954 -0.9400 3.6508 16 1 2.2631 -2.0094 3.4510 17 6 3.5788 -0.4017 4.0209 18 8 3.4730 0.9775 4.3793 19 6 1.2416 -0.7020 4.7932 20 6 0.5227 0.4772 4.8591 21 6 -0.3550 0.6939 5.9045 22 6 -0.5075 -0.2647 6.8891 23 6 0.2148 -1.4415 6.8257 24 6 1.0899 -1.6599 5.7778 25 6 1.8776 -2.9428 5.7089 26 9 1.5282 -3.7630 6.7870 27 9 1.5907 -3.6023 4.5088 28 9 3.2453 -2.6538 5.7668 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.7095 1.1616 -3.4844 33 1 1.1492 0.5390 2.5436 34 1 3.9749 -0.9669 4.8645 35 1 4.2491 -0.5049 3.1676 36 1 4.3143 1.3856 4.6259 37 1 0.6443 1.2274 4.0917 38 1 -0.9191 1.6135 5.9543 39 1 -1.1907 -0.0940 7.7079 40 1 0.0960 -2.1901 7.5950 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886568926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:22 Heat of formation + Delta-G solvation = -230.984969 kcal Electronic energy + Delta-G solvation = -29688.172609 eV Core-core repulsion = 25052.176081 eV Total energy + Delta-G solvation = -4635.996528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.34569 -48.83249 -48.79322 -41.35050 -40.09421 -37.95452 -35.82734 -35.68434 -33.40335 -32.76526 -31.74590 -29.48190 -27.20543 -27.02681 -25.18430 -24.33358 -23.22023 -21.92382 -21.05907 -19.63927 -19.61233 -19.43824 -18.48370 -18.39320 -17.96516 -17.13425 -16.71501 -16.30506 -16.19626 -16.10431 -15.83761 -15.61380 -15.41867 -15.35822 -15.22395 -14.95225 -14.86497 -14.71417 -14.48916 -14.26359 -13.99175 -13.69970 -13.55327 -13.28002 -12.99922 -12.89157 -12.67296 -12.60062 -12.26303 -12.18858 -12.07731 -12.01888 -11.06568 -11.03545 -10.62314 -10.35472 -10.24195 -10.12219 -9.84390 -8.15523 -6.25604 -0.10084 0.25385 1.39013 1.41028 1.54501 1.55990 1.86938 2.21788 2.46133 2.53108 2.62189 2.92720 3.13967 3.21110 3.29257 3.37744 3.79139 4.03117 4.07717 4.20490 4.33305 4.35392 4.39199 4.50592 4.63922 4.67272 4.73784 4.88170 4.93492 5.00629 5.17728 5.29300 5.39714 5.48454 5.54115 5.74132 5.81007 5.92636 6.19637 6.67415 6.79878 6.84081 7.38131 7.48789 8.90642 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.017025 B = 0.003630 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.256341 B = 7712.346547 C = 8232.754051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.027 3.973 3 H 0.043 0.957 4 C -0.528 4.528 5 H 0.048 0.952 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.955 3.045 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.273 1.273 12 C 0.523 3.477 13 O -0.584 6.584 14 N -0.712 5.712 15 C 0.162 3.838 16 H 0.089 0.911 17 C 0.073 3.927 18 O -0.567 6.567 19 C -0.045 4.045 20 C -0.108 4.108 21 C -0.077 4.077 22 C -0.113 4.113 23 C -0.073 4.073 24 C -0.195 4.195 25 C 0.502 3.498 26 F -0.171 7.171 27 F -0.187 7.187 28 F -0.179 7.179 29 H 0.021 0.979 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.265 0.735 33 H 0.409 0.591 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.396 0.604 37 H 0.135 0.865 38 H 0.165 0.835 39 H 0.171 0.829 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.189 1.475 24.066 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.006 3.994 3 H 0.060 0.940 4 C -0.567 4.567 5 H 0.066 0.934 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.781 3.219 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.199 1.199 12 C 0.313 3.687 13 O -0.463 6.463 14 N -0.366 5.366 15 C 0.057 3.943 16 H 0.107 0.893 17 C -0.007 4.007 18 O -0.374 6.374 19 C -0.045 4.045 20 C -0.126 4.126 21 C -0.094 4.094 22 C -0.131 4.131 23 C -0.091 4.091 24 C -0.196 4.196 25 C 0.448 3.552 26 F -0.152 7.152 27 F -0.168 7.168 28 F -0.160 7.160 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.247 0.753 34 H 0.092 0.908 35 H 0.053 0.947 36 H 0.245 0.755 37 H 0.152 0.848 38 H 0.182 0.818 39 H 0.189 0.811 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.369 0.741 23.709 23.958 hybrid contribution 1.207 -0.483 -1.142 1.731 sum -2.162 0.259 22.567 22.672 Atomic orbital electron populations 1.21560 0.94977 0.99399 1.01775 1.18797 0.95382 0.95927 0.89313 0.93956 1.21298 1.31605 1.12698 0.91076 0.93412 1.25577 0.95177 0.95743 1.01336 1.69947 1.37182 1.23500 1.24264 0.85551 0.78362 0.78573 0.79436 1.20601 1.19881 1.19874 1.21658 0.78099 0.83589 0.85397 1.90510 1.39868 1.28545 1.87379 1.46007 1.54424 1.32270 1.03900 1.20134 0.92374 0.98008 0.83787 0.89299 1.22511 0.95087 0.84014 0.99045 1.86394 1.37786 1.23085 1.90160 1.19433 0.96413 0.94886 0.93817 1.21065 0.96109 0.95476 0.99958 1.21780 0.95302 1.00323 0.92032 1.21603 0.99299 0.92178 0.99989 1.21272 0.93001 0.99176 0.95664 1.19800 1.04618 0.93657 1.01574 1.18576 0.78034 0.85234 0.73364 1.93154 1.91759 1.74851 1.55419 1.93200 1.93319 1.83076 1.47206 1.93151 1.33665 1.93232 1.95980 0.95956 0.93070 0.90821 0.92563 0.75262 0.90787 0.94725 0.75453 0.84777 0.81755 0.81129 0.82549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.87 71.98 0.64 -4.87 16 2 C 0.03 1.38 2.64 -12.29 -0.03 1.35 16 3 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 4 C -0.53 -31.11 8.37 25.60 0.21 -30.89 16 5 H 0.05 3.02 6.75 -2.91 -0.02 3.00 16 6 C 0.02 1.18 5.30 84.66 0.45 1.63 16 7 N -0.91 -51.21 11.32 21.45 0.24 -50.97 16 8 Si 0.95 45.44 29.54 68.60 2.03 47.47 16 9 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 12 C 0.52 24.88 7.13 87.66 0.63 25.51 16 13 O -0.58 -32.06 15.09 -3.01 -0.05 -32.10 16 14 N -0.71 -25.97 4.83 -446.11 -2.15 -28.13 16 15 C 0.16 5.30 1.91 44.25 0.08 5.39 16 16 H 0.09 3.39 4.82 -2.39 -0.01 3.37 16 17 C 0.07 2.12 6.72 71.98 0.48 2.61 16 18 O -0.57 -13.73 12.65 -148.98 -1.89 -15.62 16 19 C -0.04 -1.16 4.70 -19.87 -0.09 -1.25 16 20 C -0.11 -2.28 8.64 22.27 0.19 -2.08 16 21 C -0.08 -1.09 10.05 22.27 0.22 -0.87 16 22 C -0.11 -1.40 10.05 22.27 0.22 -1.17 16 23 C -0.07 -1.21 9.43 22.27 0.21 -1.00 16 24 C -0.19 -4.56 5.37 -19.87 -0.11 -4.67 16 25 C 0.50 12.97 2.81 71.24 0.20 13.17 16 26 F -0.17 -3.83 15.98 44.97 0.72 -3.11 16 27 F -0.19 -5.89 15.20 44.97 0.68 -5.21 16 28 F -0.18 -4.72 14.24 44.97 0.64 -4.08 16 29 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 1.90 7.57 -2.38 -0.02 1.89 16 31 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 32 H 0.27 14.07 8.31 -92.71 -0.77 13.29 16 33 H 0.41 12.88 5.84 -92.71 -0.54 12.34 16 34 H 0.07 1.94 5.70 -2.39 -0.01 1.92 16 35 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.40 6.06 9.12 -74.05 -0.68 5.38 16 37 H 0.13 2.80 6.34 -2.91 -0.02 2.78 16 38 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 40 H 0.16 1.92 7.16 -2.91 -0.02 1.90 16 Total: -1.00 -72.78 340.37 3.45 -69.33 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -0.09 Total: 19.59 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 3.31 Total: 2.84 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -1.91 Total: -79.10 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -1.93 Total: -47.72 kcal Atomic # 9 Polarization: -14.44 SS G_CDS: 2.04 Total: -12.40 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -72.78 3.45 -69.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886568926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.659 kcal (2) G-P(sol) polarization free energy of solvation -72.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds