Wall clock time and date at job start Tue Mar 31 2020 16:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47277 * 2 1 4 4 C 1.52998 * 109.47300 * 240.00090 * 2 1 3 5 5 C 1.50701 * 109.47233 * 120.00047 * 2 1 3 6 6 N 1.30258 * 125.61867 * 60.00113 * 5 2 1 7 7 C 1.34474 * 108.70072 * 180.02562 * 6 5 2 8 8 C 1.50699 * 126.16658 * 180.02562 * 7 6 5 9 9 S 1.81398 * 109.47638 * 270.00614 * 8 7 6 10 10 O 1.42101 * 108.57703 * 294.48767 * 9 8 7 11 11 O 1.42099 * 108.57940 * 65.50901 * 9 8 7 12 12 C 1.81399 * 101.92277 * 179.97438 * 9 8 7 13 13 C 1.53003 * 109.46906 * 179.97438 * 12 9 8 14 14 O 1.42895 * 109.46898 * 180.02562 * 13 12 9 15 15 C 1.42904 * 113.99781 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.46911 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99853 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99793 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99757 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99738 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47385 * 60.00327 * 20 18 16 22 22 H 1.48507 * 109.46817 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46997 * 299.99690 * 20 18 16 24 24 C 1.34331 * 107.67029 * 0.02562 * 7 6 5 25 25 O 1.33964 * 125.61941 * 240.02409 * 5 2 1 26 26 H 1.08994 * 109.47300 * 299.99854 * 1 2 3 27 27 H 1.09001 * 109.47357 * 59.99792 * 1 2 3 28 28 H 1.09003 * 109.46903 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47283 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47097 * 300.00367 * 3 2 1 31 31 H 1.09002 * 109.46686 * 59.99588 * 3 2 1 32 32 H 1.09003 * 109.47264 * 299.99927 * 4 2 1 33 33 H 1.09001 * 109.47277 * 60.00064 * 4 2 1 34 34 H 1.09005 * 109.47530 * 180.02562 * 4 2 1 35 35 H 1.09007 * 109.46727 * 30.00233 * 8 7 6 36 36 H 1.08996 * 109.47388 * 150.00013 * 8 7 6 37 37 H 1.09005 * 109.46851 * 299.99563 * 12 9 8 38 38 H 1.08990 * 109.47378 * 60.00123 * 12 9 8 39 39 H 1.08996 * 109.47034 * 300.00108 * 13 12 9 40 40 H 1.09002 * 109.47340 * 60.00080 * 13 12 9 41 41 H 1.09001 * 109.46678 * 299.99331 * 15 14 13 42 42 H 1.08994 * 109.47203 * 59.99579 * 15 14 13 43 43 H 0.97004 * 119.99494 * 180.02562 * 19 18 16 44 44 H 1.08001 * 126.44227 * 180.25944 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 1.7860 -1.9504 1.5442 7 6 2.3989 -2.2307 2.7079 8 6 2.3742 -3.5530 3.4301 9 16 0.9671 -3.5910 4.5743 10 8 1.1791 -2.6150 5.5852 11 8 -0.2342 -3.5548 3.8161 12 6 1.1319 -5.2380 5.3165 13 6 0.0073 -5.4550 6.3310 14 8 0.1375 -6.7522 6.9161 15 6 -0.8698 -7.0575 7.8828 16 6 -0.6366 -8.4418 8.4310 17 1 0.1970 -9.0297 8.0764 18 6 -1.4876 -8.9576 9.3854 19 7 -2.5031 -8.2418 9.8168 20 14 -1.1982 -10.6732 10.0654 21 1 0.1392 -10.7318 10.7082 22 1 -2.2443 -10.9900 11.0708 23 1 -1.2594 -11.6612 8.9586 24 6 3.0372 -1.1194 3.1105 25 8 2.8054 -0.1706 2.1821 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 2.2749 -4.3611 2.7053 36 1 3.3010 -3.6788 3.9897 37 1 1.0689 -5.9962 4.5359 38 1 2.0952 -5.3146 5.8207 39 1 0.0706 -4.6968 7.1114 40 1 -0.9563 -5.3783 5.8273 41 1 -0.8252 -6.3323 8.6953 42 1 -1.8513 -7.0145 7.4108 43 1 -3.1015 -8.6046 10.4885 44 1 3.6293 -1.0087 4.0069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899975211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:10 Heat of formation + Delta-G solvation = -107.650033 kcal Electronic energy + Delta-G solvation = -25729.874079 eV Core-core repulsion = 21776.526447 eV Total energy + Delta-G solvation = -3953.347633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.80967 -37.43087 -37.03834 -37.00368 -36.09249 -35.63102 -32.94546 -31.87790 -31.35819 -28.23243 -27.74227 -27.68010 -27.11906 -23.70364 -23.25685 -22.35262 -21.74335 -19.98794 -18.96274 -17.55329 -17.39454 -16.70633 -16.55127 -16.38423 -15.99292 -15.68259 -15.32088 -15.15592 -14.91732 -14.47325 -14.37838 -14.19270 -13.83379 -13.53332 -13.04497 -12.95585 -12.79901 -12.70953 -12.16042 -12.13540 -12.12727 -12.08074 -12.02792 -12.01393 -11.58597 -11.45719 -11.29195 -11.16890 -10.93924 -10.88482 -10.84742 -10.79946 -10.63979 -10.11291 -9.20894 -9.12504 -8.95186 -8.28098 -6.14953 -4.17879 -0.29324 1.08005 2.23947 2.29325 2.61505 3.20119 3.29801 3.32683 3.36117 3.55042 3.82886 4.08448 4.25856 4.30537 4.37521 4.40013 4.57172 4.58353 4.77777 4.91669 4.96947 5.11653 5.17287 5.20261 5.21217 5.29226 5.32527 5.36602 5.42129 5.45607 5.51377 5.53229 5.62305 5.79380 5.83616 5.84705 5.91750 5.95311 7.00800 7.32188 7.34478 7.72305 8.06531 8.42546 8.92906 9.46681 10.96416 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.036276 B = 0.001943 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.670824 B =14409.974557 C =14546.170679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.031 3.969 3 C -0.148 4.148 4 C -0.140 4.140 5 C 0.207 3.793 6 N -0.462 5.462 7 C -0.017 4.017 8 C -0.529 4.529 9 S 2.419 3.581 10 O -0.931 6.931 11 O -0.921 6.921 12 C -0.606 4.606 13 C 0.075 3.925 14 O -0.387 6.387 15 C 0.190 3.810 16 C -0.519 4.519 17 H 0.067 0.933 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.911 3.089 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.047 4.047 25 O -0.192 6.192 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.010 0.990 42 H 0.011 0.989 43 H 0.266 0.734 44 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.705 19.041 -21.315 31.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.030 3.970 3 C -0.205 4.205 4 C -0.197 4.197 5 C -0.001 4.001 6 N -0.191 5.191 7 C -0.138 4.138 8 C -0.656 4.656 9 S 2.600 3.400 10 O -0.928 6.928 11 O -0.918 6.918 12 C -0.735 4.735 13 C -0.004 4.004 14 O -0.307 6.307 15 C 0.116 3.884 16 C -0.557 4.557 17 H 0.085 0.915 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.738 3.262 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.120 4.120 25 O -0.078 6.078 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.171 0.829 36 H 0.167 0.833 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.076 0.924 44 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 11.705 19.161 -21.434 31.041 hybrid contribution 1.046 -1.083 0.964 1.787 sum 12.751 18.078 -20.470 30.140 Atomic orbital electron populations 1.21946 0.91264 1.04025 1.02867 1.19189 0.96792 0.94495 0.86533 1.21933 1.01822 0.93505 1.03261 1.21911 1.01375 1.01428 0.95007 1.26347 0.92648 0.88470 0.92662 1.70281 1.22080 1.13784 1.12907 1.20373 1.02844 0.95220 0.95313 1.28759 1.21946 1.00069 1.14785 1.08261 0.77118 0.78062 0.76559 1.93584 1.85856 1.56644 1.56751 1.93608 1.40912 1.86112 1.71135 1.30393 1.09564 1.22156 1.11430 1.21756 0.94376 0.90154 0.94096 1.87886 1.54706 1.29065 1.59008 1.20344 0.85825 0.96632 0.85599 1.20977 1.13022 0.99394 1.22341 0.91487 1.24970 0.94795 0.98591 0.96164 1.69955 1.15571 1.37554 1.30407 0.86345 0.77929 0.83254 0.78630 1.19997 1.21081 1.19975 1.24989 1.04276 0.86968 0.95745 1.84487 1.54440 1.40456 1.28455 0.91948 0.90759 0.90725 0.91805 0.90777 0.91647 0.90961 0.90774 0.92241 0.82949 0.83302 0.84193 0.84283 0.92664 0.92620 0.97178 0.97165 0.92447 0.75876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.46 37.15 0.31 -0.73 16 2 C 0.03 0.23 0.99 -155.66 -0.15 0.08 16 3 C -0.15 -0.82 8.02 37.16 0.30 -0.52 16 4 C -0.14 -0.86 8.46 37.16 0.31 -0.54 16 5 C 0.21 2.21 6.47 -12.95 -0.08 2.13 16 6 N -0.46 -5.84 11.29 -7.36 -0.08 -5.92 16 7 C -0.02 -0.20 6.37 -82.81 -0.53 -0.72 16 8 C -0.53 -4.64 6.35 36.01 0.23 -4.41 16 9 S 2.42 30.63 4.70 -107.50 -0.51 30.13 16 10 O -0.93 -14.08 18.10 -57.83 -1.05 -15.13 16 11 O -0.92 -15.18 18.10 -57.83 -1.05 -16.22 16 12 C -0.61 -7.86 6.18 37.16 0.23 -7.63 16 13 C 0.08 1.41 5.95 37.16 0.22 1.63 16 14 O -0.39 -9.29 10.33 -35.23 -0.36 -9.66 16 15 C 0.19 5.26 5.69 36.01 0.20 5.46 16 16 C -0.52 -15.27 9.43 -34.44 -0.32 -15.60 16 17 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 20 Si 0.91 21.74 29.54 -169.99 -5.02 16.72 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 C -0.05 -0.45 12.08 29.35 0.35 -0.10 16 25 O -0.19 -2.00 10.17 5.36 0.05 -1.94 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.15 1.08 8.14 -51.92 -0.42 0.66 16 36 H 0.15 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.14 1.54 8.14 -51.92 -0.42 1.11 16 38 H 0.14 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.22 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 389.32 15.07 5.87 5.87 Total: -1.00 -38.97 389.32 -7.59 -46.55 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -7.15 Total: -4.86 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 0.98 Total: -19.42 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.65 Total: -32.03 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -2.40 Total: -42.95 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 30.63 SS G_CDS: -0.51 Total: 30.13 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.97 -7.59 -46.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899975211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.097 kcal (2) G-P(sol) polarization free energy of solvation -38.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds