Wall clock time and date at job start Tue Mar 31 2020 17:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46870 * 2 1 4 4 C 1.50705 * 109.46845 * 120.00210 * 2 1 3 5 5 H 1.08001 * 119.99768 * 120.00244 * 4 2 1 6 6 C 1.37880 * 119.99783 * 299.99653 * 4 2 1 7 7 N 1.31510 * 120.00255 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99483 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47103 * 60.00468 * 8 6 4 10 10 H 1.48504 * 109.46688 * 180.02562 * 8 6 4 11 11 H 1.48492 * 109.47139 * 299.99938 * 8 6 4 12 12 N 1.46498 * 109.47092 * 240.00122 * 2 1 3 13 13 C 1.46504 * 119.99881 * 300.00402 * 12 2 1 14 14 C 1.34771 * 119.99976 * 120.00091 * 12 2 1 15 15 O 1.21280 * 120.00100 * 5.12168 * 14 12 2 16 16 C 1.50704 * 120.00134 * 185.12548 * 14 12 2 17 17 H 1.09003 * 109.46829 * 326.29170 * 16 14 12 18 18 O 1.42897 * 109.47460 * 86.28873 * 16 14 12 19 19 C 1.50695 * 109.47323 * 206.29115 * 16 14 12 20 20 C 1.38256 * 120.00151 * 266.45932 * 19 16 14 21 21 C 1.38219 * 120.00236 * 179.76546 * 20 19 16 22 22 C 1.38258 * 119.99489 * 0.50409 * 21 20 19 23 23 C 1.38213 * 120.00544 * 359.74812 * 22 21 20 24 24 C 1.38218 * 120.00138 * 86.72900 * 19 16 14 25 25 C 1.50698 * 119.99888 * 0.02562 * 24 19 16 26 26 F 1.39900 * 109.47243 * 183.40905 * 25 24 19 27 27 F 1.39899 * 109.47465 * 303.40929 * 25 24 19 28 28 F 1.39899 * 109.46923 * 63.40900 * 25 24 19 29 29 H 1.08995 * 109.47352 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47060 * 299.99852 * 1 2 3 31 31 H 1.09003 * 109.46891 * 59.99542 * 1 2 3 32 32 H 0.97001 * 119.99993 * 179.97438 * 7 6 4 33 33 H 1.09009 * 109.46602 * 265.04838 * 13 12 2 34 34 H 1.08994 * 109.47035 * 145.05302 * 13 12 2 35 35 H 1.08995 * 109.47145 * 25.04768 * 13 12 2 36 36 H 0.96697 * 113.99556 * 59.99885 * 18 16 14 37 37 H 1.07999 * 119.99998 * 359.97438 * 20 19 16 38 38 H 1.07995 * 120.00252 * 180.23168 * 21 20 19 39 39 H 1.08006 * 119.99668 * 179.72396 * 22 21 20 40 40 H 1.08001 * 120.00433 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1197 4.0080 9 1 3.8074 -1.1191 4.0078 10 1 1.8268 -0.4200 5.2205 11 1 1.8279 -2.5199 4.0081 12 7 2.0184 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 6 2.7932 -0.0356 -2.0833 15 8 3.1630 1.0950 -1.8468 16 6 3.2001 -0.7080 -3.3692 17 1 3.3304 -1.7761 -3.1952 18 8 2.1847 -0.5063 -4.3542 19 6 4.4975 -0.1165 -3.8567 20 6 4.4839 0.9301 -4.7600 21 6 5.6738 1.4758 -5.2035 22 6 6.8779 0.9682 -4.7517 23 6 6.8916 -0.0814 -3.8526 24 6 5.7013 -0.6239 -3.4050 25 6 5.7162 -1.7690 -2.4255 26 9 7.0365 -2.0528 -2.0601 27 9 4.9824 -1.4186 -1.2871 28 9 5.1437 -2.8986 -3.0199 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.7082 1.1608 3.4845 33 1 2.4591 -2.7359 -1.0491 34 1 1.5377 -2.2639 -2.4971 35 1 0.7331 -2.3232 -0.9104 36 1 2.0152 0.4233 -4.5596 37 1 3.5434 1.3234 -5.1166 38 1 5.6631 2.2957 -5.9063 39 1 7.8078 1.3917 -5.1016 40 1 7.8322 -0.4782 -3.5000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900567248.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:12 Heat of formation + Delta-G solvation = -194.735527 kcal Electronic energy + Delta-G solvation = -30543.060678 eV Core-core repulsion = 25908.636043 eV Total energy + Delta-G solvation = -4634.424635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.11718 -47.66936 -47.46426 -40.37030 -38.76920 -36.54787 -35.34951 -32.84336 -32.44344 -31.44185 -29.63716 -27.14879 -26.15029 -25.77591 -25.17585 -22.62316 -22.11878 -20.89899 -18.95958 -18.61443 -18.44858 -18.32503 -17.35834 -16.53135 -16.33828 -15.89486 -15.46525 -15.12081 -14.82572 -14.59520 -14.49832 -14.40456 -14.15084 -13.97300 -13.65531 -13.59783 -13.48698 -13.26584 -13.05866 -12.73779 -12.62428 -12.20087 -12.15157 -11.77753 -11.56713 -11.48471 -11.33504 -11.05655 -10.87987 -10.79095 -10.66760 -10.25669 -10.14943 -9.40155 -9.24687 -9.14017 -8.75263 -8.40755 -7.62222 -6.05337 -4.12554 0.78146 1.07305 2.68013 3.04581 3.29645 3.30695 3.34893 3.38130 3.69045 3.85474 4.02750 4.32712 4.38718 4.45568 4.48878 4.62733 4.76636 4.97282 5.00974 5.15569 5.26238 5.36966 5.43976 5.65423 5.78264 5.98935 6.07222 6.11926 6.16857 6.32755 6.56939 6.74959 6.80322 7.03456 7.27628 7.40583 7.48134 7.72167 8.00532 8.19278 8.46944 8.78687 8.96245 9.53364 11.00081 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.014723 B = 0.004760 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.383062 B = 5880.824517 C = 6602.099710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.522 4.522 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.574 5.574 13 C 0.079 3.921 14 C 0.483 3.517 15 O -0.539 6.539 16 C 0.111 3.889 17 H 0.126 0.874 18 O -0.532 6.532 19 C -0.043 4.043 20 C -0.099 4.099 21 C -0.084 4.084 22 C -0.123 4.123 23 C -0.072 4.072 24 C -0.171 4.171 25 C 0.499 3.501 26 F -0.178 7.178 27 F -0.156 7.156 28 F -0.178 7.178 29 H 0.031 0.969 30 H 0.095 0.905 31 H 0.011 0.989 32 H 0.263 0.737 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.380 0.620 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.364 -2.948 -16.436 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.305 5.305 13 C -0.065 4.065 14 C 0.267 3.733 15 O -0.417 6.417 16 C 0.049 3.951 17 H 0.144 0.856 18 O -0.338 6.338 19 C -0.044 4.044 20 C -0.117 4.117 21 C -0.102 4.102 22 C -0.141 4.141 23 C -0.090 4.090 24 C -0.173 4.173 25 C 0.445 3.555 26 F -0.159 7.159 27 F -0.137 7.137 28 F -0.159 7.159 29 H 0.050 0.950 30 H 0.113 0.887 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.229 0.771 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.414 -2.922 -16.087 18.388 hybrid contribution 0.373 -0.208 1.166 1.242 sum 8.787 -3.130 -14.921 17.596 Atomic orbital electron populations 1.22109 0.98038 0.99518 1.00872 1.18996 0.90844 0.94449 0.79909 0.91942 1.21263 1.31687 1.12975 0.90149 0.92241 1.24873 0.94949 0.94977 0.98914 1.69861 1.36437 1.22663 1.23822 0.86562 0.79312 0.79609 0.81972 1.20231 1.21181 1.20201 1.48180 1.47748 1.11622 1.22974 1.21690 1.01794 0.82896 1.00113 1.20631 0.80185 0.87116 0.85319 1.90682 1.54617 1.18975 1.77428 1.21293 0.84790 1.01639 0.87399 0.85643 1.86635 1.56788 1.31804 1.58531 1.19884 0.93501 0.95602 0.95409 1.20806 0.99116 0.94920 0.96896 1.21317 0.92114 0.98516 0.98297 1.21142 0.98633 0.96559 0.97764 1.20965 0.96773 0.95528 0.95699 1.19770 0.95805 0.99612 1.02080 1.18415 0.73926 0.82246 0.80956 1.93146 1.36046 1.94273 1.92436 1.93393 1.76693 1.91620 1.52017 1.93175 1.84643 1.54342 1.83751 0.94971 0.88683 0.96976 0.92672 0.93278 0.92423 0.90153 0.77050 0.84943 0.84873 0.84795 0.84345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.96 37.16 0.33 -3.19 16 2 C 0.26 6.65 2.63 -69.08 -0.18 6.46 16 3 H 0.06 1.86 6.91 -51.93 -0.36 1.50 16 4 C -0.52 -14.34 8.37 -34.44 -0.29 -14.63 16 5 H 0.06 1.63 7.65 -52.49 -0.40 1.23 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.31 11.32 55.43 0.63 -24.68 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.57 -12.54 2.75 -175.26 -0.48 -13.02 16 13 C 0.08 1.42 9.03 59.85 0.54 1.96 16 14 C 0.48 10.06 5.24 -10.99 -0.06 10.00 16 15 O -0.54 -13.01 15.63 5.56 0.09 -12.92 16 16 C 0.11 1.81 1.95 -29.04 -0.06 1.75 16 17 H 0.13 2.01 4.38 -51.93 -0.23 1.78 16 18 O -0.53 -7.47 12.90 -35.23 -0.45 -7.93 16 19 C -0.04 -0.64 4.43 -104.63 -0.46 -1.10 16 20 C -0.10 -1.22 9.31 -39.58 -0.37 -1.58 16 21 C -0.08 -0.85 10.05 -39.58 -0.40 -1.24 16 22 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 23 C -0.07 -0.85 9.43 -39.58 -0.37 -1.22 16 24 C -0.17 -2.51 5.37 -104.62 -0.56 -3.08 16 25 C 0.50 7.82 2.81 36.00 0.10 7.92 16 26 F -0.18 -2.58 15.98 2.25 0.04 -2.54 16 27 F -0.16 -3.02 14.68 2.25 0.03 -2.99 16 28 F -0.18 -2.61 15.61 2.25 0.04 -2.58 16 29 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 30 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 31 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 34 H 0.06 0.89 6.58 -51.93 -0.34 0.54 16 35 H 0.08 1.44 6.44 -51.93 -0.33 1.10 16 36 H 0.38 4.25 7.31 45.56 0.33 4.58 16 37 H 0.13 1.31 6.43 -52.49 -0.34 0.98 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 40 H 0.14 1.37 7.16 -52.49 -0.38 1.00 16 LS Contribution 338.93 15.07 5.11 5.11 Total: -1.00 -32.52 338.93 -5.83 -38.35 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -3.53 Total: 4.62 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -2.27 Total: 2.14 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.14 Total: -37.70 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.37 Total: -20.85 kcal Atomic # 9 Polarization: -8.21 SS G_CDS: 0.10 Total: -8.11 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.52 -5.83 -38.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900567248.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.382 kcal (2) G-P(sol) polarization free energy of solvation -32.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds