Wall clock time and date at job start Tue Mar 31 2020 17:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47063 * 2 1 4 4 C 1.50699 * 109.47152 * 119.99897 * 2 1 3 5 5 H 1.07998 * 119.99777 * 119.99619 * 4 2 1 6 6 C 1.37874 * 120.00004 * 300.00243 * 4 2 1 7 7 N 1.31515 * 120.00066 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00135 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.46827 * 90.00421 * 8 6 4 10 10 H 1.48503 * 109.47059 * 210.00280 * 8 6 4 11 11 H 1.48501 * 109.47311 * 330.00345 * 8 6 4 12 12 N 1.46499 * 109.46995 * 240.00254 * 2 1 3 13 13 C 1.46498 * 119.99617 * 299.99476 * 12 2 1 14 14 C 1.34774 * 119.99893 * 120.27567 * 12 2 1 15 15 O 1.21275 * 120.00466 * 4.25961 * 14 12 2 16 16 C 1.50700 * 119.99525 * 184.25459 * 14 12 2 17 17 H 1.09005 * 109.47352 * 33.92801 * 16 14 12 18 18 O 1.42903 * 109.47708 * 273.91949 * 16 14 12 19 19 C 1.50703 * 109.46965 * 153.92041 * 16 14 12 20 20 C 1.38252 * 120.00090 * 94.92553 * 19 16 14 21 21 C 1.38214 * 120.00522 * 180.02562 * 20 19 16 22 22 C 1.38261 * 119.99500 * 359.97438 * 21 20 19 23 23 C 1.38212 * 120.00070 * 359.97438 * 22 21 20 24 24 C 1.38220 * 120.00025 * 274.65842 * 19 16 14 25 25 C 1.50694 * 119.99935 * 359.97438 * 24 19 16 26 26 F 1.39898 * 109.47027 * 181.98874 * 25 24 19 27 27 F 1.39900 * 109.47155 * 301.98672 * 25 24 19 28 28 F 1.39898 * 109.47387 * 61.99039 * 25 24 19 29 29 H 1.09002 * 109.47206 * 299.99785 * 1 2 3 30 30 H 1.08998 * 109.47448 * 59.99869 * 1 2 3 31 31 H 1.08999 * 109.47063 * 179.97438 * 1 2 3 32 32 H 0.97004 * 120.00186 * 179.97438 * 7 6 4 33 33 H 1.09006 * 109.46808 * 85.81365 * 13 12 2 34 34 H 1.09003 * 109.46981 * 205.80537 * 13 12 2 35 35 H 1.08997 * 109.47808 * 325.81442 * 13 12 2 36 36 H 0.96700 * 113.99803 * 300.00984 * 18 16 14 37 37 H 1.08007 * 120.00161 * 359.97438 * 20 19 16 38 38 H 1.07996 * 120.00224 * 179.97438 * 21 20 19 39 39 H 1.08003 * 120.00162 * 179.97438 * 22 21 20 40 40 H 1.08006 * 120.00025 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8490 2.1773 1.4922 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4279 14 6 2.7977 -0.0372 -2.0805 15 8 3.1585 1.0972 -1.8486 16 6 3.2209 -0.7163 -3.3575 17 1 2.4239 -1.3767 -3.6993 18 8 4.4047 -1.4811 -3.1208 19 6 3.4977 0.3242 -4.4119 20 6 4.7878 0.7790 -4.6125 21 6 5.0417 1.7337 -5.5792 22 6 4.0054 2.2335 -6.3460 23 6 2.7159 1.7781 -6.1462 24 6 2.4626 0.8199 -5.1823 25 6 1.0575 0.3194 -4.9681 26 9 0.1995 0.9300 -5.8891 27 9 1.0239 -1.0676 -5.1482 28 9 0.6443 0.6311 -3.6684 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9031 -0.5280 4.4376 33 1 0.7004 -2.1457 -1.9340 34 1 2.4270 -2.5623 -2.0496 35 1 1.6024 -2.6149 -0.4730 36 1 5.1568 -0.9567 -2.8135 37 1 5.5973 0.3889 -4.0132 38 1 6.0494 2.0892 -5.7355 39 1 4.2036 2.9799 -7.1011 40 1 1.9063 2.1689 -6.7449 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900567249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:15 Heat of formation + Delta-G solvation = -210.691536 kcal Electronic energy + Delta-G solvation = -30550.380931 eV Core-core repulsion = 25915.264392 eV Total energy + Delta-G solvation = -4635.116539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -51.34910 -48.84977 -48.78012 -41.68588 -40.11017 -37.87375 -37.22957 -34.78917 -33.45421 -32.49488 -32.26427 -28.51739 -27.74410 -27.19239 -26.89350 -23.97945 -23.23014 -22.38923 -20.52498 -19.76374 -19.62166 -19.61569 -19.09800 -18.54413 -17.65689 -17.55257 -17.10245 -16.45306 -16.09193 -15.97755 -15.72328 -15.65906 -15.51398 -15.23260 -15.03018 -14.93589 -14.89417 -14.78162 -14.63919 -14.12531 -14.07980 -13.76823 -13.72198 -13.62818 -13.38769 -13.08698 -13.04957 -12.76418 -12.68536 -12.29036 -12.11545 -11.91936 -11.61168 -11.39626 -10.82205 -10.67949 -10.24016 -9.93344 -9.48787 -8.37099 -6.41702 -0.16099 0.17828 1.24028 1.32841 1.40705 1.41623 1.54656 2.05573 2.25222 2.47852 2.59655 2.88396 2.97740 3.14326 3.25949 3.29599 3.46280 3.67973 3.93076 4.11411 4.31702 4.33599 4.40065 4.41779 4.52319 4.52998 4.57201 4.68911 4.80414 4.91992 5.00449 5.11648 5.22307 5.25732 5.34301 5.43784 5.63193 5.76267 6.13580 6.26566 6.57507 6.61364 7.08790 7.26184 8.78780 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.016639 B = 0.004487 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.392472 B = 6238.293471 C = 6633.382143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.233 3.767 3 H 0.033 0.967 4 C -0.526 4.526 5 H 0.047 0.953 6 C 0.026 3.974 7 N -0.936 5.936 8 Si 0.938 3.062 9 H -0.254 1.254 10 H -0.293 1.293 11 H -0.264 1.264 12 N -0.581 5.581 13 C 0.074 3.926 14 C 0.481 3.519 15 O -0.575 6.575 16 C 0.127 3.873 17 H 0.134 0.866 18 O -0.530 6.530 19 C -0.073 4.073 20 C -0.112 4.112 21 C -0.079 4.079 22 C -0.113 4.113 23 C -0.078 4.078 24 C -0.193 4.193 25 C 0.499 3.501 26 F -0.170 7.170 27 F -0.174 7.174 28 F -0.184 7.184 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.269 0.731 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.393 0.607 37 H 0.146 0.854 38 H 0.169 0.831 39 H 0.173 0.827 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.895 3.416 -24.132 24.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.130 3.870 3 H 0.050 0.950 4 C -0.564 4.564 5 H 0.065 0.935 6 C -0.173 4.173 7 N -0.576 5.576 8 Si 0.765 3.235 9 H -0.180 1.180 10 H -0.220 1.220 11 H -0.189 1.189 12 N -0.311 5.311 13 C -0.069 4.069 14 C 0.267 3.733 15 O -0.455 6.455 16 C 0.064 3.936 17 H 0.151 0.849 18 O -0.338 6.338 19 C -0.074 4.074 20 C -0.130 4.130 21 C -0.097 4.097 22 C -0.130 4.130 23 C -0.096 4.096 24 C -0.194 4.194 25 C 0.445 3.555 26 F -0.152 7.152 27 F -0.156 7.156 28 F -0.166 7.166 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.244 0.756 37 H 0.164 0.836 38 H 0.186 0.814 39 H 0.190 0.810 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.647 3.457 -23.984 24.288 hybrid contribution -0.502 0.666 1.249 1.502 sum 1.146 4.122 -22.735 23.135 Atomic orbital electron populations 1.22303 0.96740 1.02274 0.99788 1.18980 0.91680 0.93409 0.82923 0.94957 1.21315 1.31852 1.13192 0.90066 0.93478 1.25595 0.97030 0.99360 0.95288 1.69994 1.46982 1.42028 0.98584 0.86021 0.79964 0.80320 0.77162 1.17983 1.22023 1.18865 1.47884 1.48276 1.13134 1.21807 1.21930 1.01314 0.80637 1.02982 1.21565 0.79004 0.86564 0.86149 1.90636 1.56374 1.20211 1.78292 1.21073 0.90739 0.92481 0.89307 0.84875 1.86625 1.21142 1.37031 1.88981 1.19863 0.95070 0.97275 0.95207 1.21175 0.95017 0.97663 0.99132 1.21795 1.01639 0.93493 0.92728 1.21654 0.91006 1.00068 1.00275 1.21304 0.99860 0.93384 0.95049 1.19855 0.90311 1.05114 1.04147 1.18568 0.87546 0.75504 0.73874 1.93153 1.72901 1.82862 1.66259 1.93152 1.96860 1.30708 1.94854 1.93281 1.91818 1.92737 1.38743 0.93789 0.92936 0.91176 0.92183 0.91117 0.89533 0.91068 0.75574 0.83593 0.81358 0.80996 0.82605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.64 8.67 71.98 0.62 -6.01 16 2 C 0.23 11.54 2.23 44.24 0.10 11.64 16 3 H 0.03 1.80 5.97 -2.39 -0.01 1.78 16 4 C -0.53 -29.97 8.61 25.60 0.22 -29.75 16 5 H 0.05 2.93 7.51 -2.91 -0.02 2.90 16 6 C 0.03 1.53 5.45 84.65 0.46 1.99 16 7 N -0.94 -57.70 13.96 21.45 0.30 -57.40 16 8 Si 0.94 45.61 24.37 68.60 1.67 47.28 16 9 H -0.25 -11.40 6.87 99.48 0.68 -10.72 16 10 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 11 H -0.26 -12.74 6.53 99.48 0.65 -12.09 16 12 N -0.58 -24.59 2.75 -826.81 -2.28 -26.86 16 13 C 0.07 2.55 8.94 127.77 1.14 3.69 16 14 C 0.48 19.30 5.33 87.66 0.47 19.77 16 15 O -0.57 -26.96 15.62 -3.01 -0.05 -27.01 16 16 C 0.13 3.87 1.93 29.10 0.06 3.92 16 17 H 0.13 3.89 4.48 -2.38 -0.01 3.88 16 18 O -0.53 -14.52 12.53 -148.98 -1.87 -16.39 16 19 C -0.07 -1.97 4.43 -19.86 -0.09 -2.06 16 20 C -0.11 -2.38 9.30 22.27 0.21 -2.18 16 21 C -0.08 -1.20 10.05 22.27 0.22 -0.97 16 22 C -0.11 -1.59 10.05 22.27 0.22 -1.37 16 23 C -0.08 -1.48 9.43 22.27 0.21 -1.27 16 24 C -0.19 -4.91 5.37 -19.87 -0.11 -5.02 16 25 C 0.50 13.54 2.84 71.23 0.20 13.74 16 26 F -0.17 -4.10 15.98 44.97 0.72 -3.38 16 27 F -0.17 -4.53 15.17 44.97 0.68 -3.85 16 28 F -0.18 -6.15 15.12 44.97 0.68 -5.47 16 29 H 0.04 1.95 3.27 -2.39 -0.01 1.94 16 30 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 31 H 0.07 2.81 7.67 -2.39 -0.02 2.79 16 32 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 33 H 0.07 2.08 8.14 -2.38 -0.02 2.07 16 34 H 0.09 2.61 6.21 -2.39 -0.01 2.60 16 35 H 0.07 2.71 6.97 -2.39 -0.02 2.69 16 36 H 0.39 8.79 7.32 -74.06 -0.54 8.25 16 37 H 0.15 2.57 6.41 -2.91 -0.02 2.55 16 38 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 40 H 0.16 2.28 7.16 -2.91 -0.02 2.26 16 Total: -1.00 -74.52 332.28 4.30 -70.22 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.50 Total: 16.72 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 3.94 Total: 6.14 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -1.98 Total: -84.26 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -1.91 Total: -43.40 kcal Atomic # 9 Polarization: -14.78 SS G_CDS: 2.08 Total: -12.70 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.67 Total: 47.28 kcal Total: -74.52 4.30 -70.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900567249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.471 kcal (2) G-P(sol) polarization free energy of solvation -74.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds