Wall clock time and date at job start Tue Mar 31 2020 15:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38225 * 119.77103 * 2 1 4 4 C 1.38610 * 120.45981 * 180.02562 * 3 2 1 5 5 C 1.38566 * 119.72338 * 0.03008 * 4 3 2 6 6 C 1.40952 * 119.81503 * 359.96862 * 5 4 3 7 7 C 1.38562 * 119.82044 * 0.02562 * 6 5 4 8 8 C 1.47816 * 105.87603 * 179.97438 * 6 5 4 9 9 O 1.21444 * 125.70412 * 180.26210 * 8 6 5 10 10 N 1.34525 * 108.58147 * 359.97438 * 8 6 5 11 11 C 1.46499 * 124.45805 * 179.97438 * 10 8 6 12 12 C 1.50705 * 109.47172 * 89.99845 * 11 10 8 13 13 O 1.20826 * 119.99801 * 0.02562 * 12 11 10 14 14 O 1.34220 * 119.99925 * 179.97438 * 12 11 10 15 15 C 1.45203 * 117.00081 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47431 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47060 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.47043 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00139 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00157 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99661 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00161 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46841 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47070 * 119.99708 * 22 20 18 25 25 H 1.48498 * 109.47177 * 240.00328 * 22 20 18 26 26 C 1.34523 * 111.08228 * 0.02562 * 10 8 6 27 27 O 1.21437 * 125.70907 * 179.97438 * 26 10 8 28 28 H 1.08992 * 109.47499 * 269.98129 * 1 2 3 29 29 H 1.09005 * 109.47176 * 29.98844 * 1 2 3 30 30 H 1.09010 * 109.47085 * 149.98070 * 1 2 3 31 31 H 1.07997 * 119.76893 * 0.02562 * 3 2 1 32 32 H 1.08007 * 120.13828 * 180.02562 * 4 3 2 33 33 H 1.07999 * 120.13734 * 179.97438 * 7 6 5 34 34 H 1.08993 * 109.47169 * 210.00233 * 11 10 8 35 35 H 1.09000 * 109.47012 * 330.00198 * 11 10 8 36 36 H 1.09000 * 109.47010 * 300.00030 * 15 14 12 37 37 H 1.09001 * 109.46725 * 59.99673 * 15 14 12 38 38 H 1.09000 * 109.47193 * 300.00096 * 16 15 14 39 39 H 1.09005 * 109.46882 * 60.00440 * 16 15 14 40 40 H 1.09000 * 109.47206 * 300.00101 * 17 16 15 41 41 H 1.08993 * 109.47175 * 60.00186 * 17 16 15 42 42 H 0.97002 * 120.00142 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1998 0.0000 4 6 3.5793 1.2165 -0.0005 5 6 4.2807 0.0215 -0.0017 6 6 3.5808 -1.2020 -0.0017 7 6 2.1952 -1.2031 -0.0010 8 6 4.6141 -2.2590 -0.0037 9 8 4.4044 -3.4552 -0.0088 10 7 5.8256 -1.6741 -0.0054 11 6 7.0972 -2.4016 -0.0071 12 6 7.5313 -2.6511 -1.4286 13 8 6.8487 -2.2608 -2.3460 14 8 8.6766 -3.3059 -1.6754 15 6 9.0324 -3.5099 -3.0683 16 6 10.3590 -4.2676 -3.1502 17 6 10.7335 -4.4831 -4.6179 18 6 12.0399 -5.2299 -4.6986 19 1 12.5522 -5.5213 -3.7935 20 6 12.5819 -5.5403 -5.9279 21 7 11.9589 -5.1842 -7.0299 22 14 14.2016 -6.4654 -6.0279 23 1 14.6966 -6.7464 -4.6563 24 1 13.9967 -7.7452 -6.7525 25 1 15.1994 -5.6394 -6.7541 26 6 5.7157 -0.3334 -0.0041 27 8 6.6405 0.4536 -0.0047 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3634 0.8901 -0.5137 30 1 -0.3634 -0.8899 -0.5142 31 1 1.6458 2.1307 0.0004 32 1 4.1103 2.1570 -0.0001 33 1 1.6538 -2.1376 -0.0014 34 1 7.8552 -1.8095 0.5056 35 1 6.9714 -3.3545 0.5069 36 1 8.2517 -4.0891 -3.5615 37 1 9.1350 -2.5437 -3.5623 38 1 11.1395 -3.6881 -2.6570 39 1 10.2567 -5.2338 -2.6561 40 1 9.9530 -5.0628 -5.1107 41 1 10.8356 -3.5172 -5.1124 42 1 12.3399 -5.4028 -7.8948 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914623272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:49 Heat of formation + Delta-G solvation = -135.768783 kcal Electronic energy + Delta-G solvation = -26679.994469 eV Core-core repulsion = 22589.983565 eV Total energy + Delta-G solvation = -4090.010904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.62957 -41.61388 -39.95160 -39.79623 -38.09433 -37.11351 -36.00248 -34.45144 -33.73582 -32.56810 -30.76594 -29.04536 -27.90838 -26.08605 -25.37537 -24.27819 -22.73983 -22.43794 -22.22936 -20.95536 -19.31690 -18.80612 -18.75792 -18.52139 -17.88569 -17.83802 -17.20643 -16.71123 -16.51546 -16.48489 -15.96808 -15.89375 -15.31605 -15.17076 -15.10873 -14.82533 -14.59540 -14.24377 -14.14891 -13.81898 -13.52036 -13.25857 -13.03975 -13.01365 -12.87855 -12.68980 -12.54761 -12.47346 -12.22356 -12.18847 -11.76120 -11.63720 -11.61580 -11.50812 -11.32542 -11.14466 -10.60741 -10.28185 -9.96406 -8.24328 -6.36159 -1.11259 -0.09384 0.72773 0.85135 0.86970 1.39697 1.40578 1.42702 1.54536 1.85321 2.39569 2.44339 2.53561 3.07752 3.09644 3.34262 3.52795 3.71945 3.82376 3.91438 3.94065 3.96422 4.01722 4.06611 4.12094 4.32053 4.32981 4.67626 4.73582 4.76593 4.80642 4.87285 4.90552 5.01866 5.03914 5.24376 5.25514 5.30157 5.38247 5.45568 5.58958 5.67267 5.76864 5.91650 6.15224 6.28240 6.43061 6.79801 7.33572 8.88235 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.027959 B = 0.001877 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.235593 B =14910.783302 C =15034.691055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.052 4.052 3 C -0.086 4.086 4 C -0.035 4.035 5 C -0.166 4.166 6 C -0.151 4.151 7 C -0.047 4.047 8 C 0.577 3.423 9 O -0.487 6.487 10 N -0.572 5.572 11 C 0.122 3.878 12 C 0.442 3.558 13 O -0.539 6.539 14 O -0.346 6.346 15 C 0.078 3.922 16 C -0.093 4.093 17 C 0.025 3.975 18 C -0.543 4.543 19 H 0.067 0.933 20 C -0.003 4.003 21 N -0.934 5.934 22 Si 0.971 3.029 23 H -0.259 1.259 24 H -0.278 1.278 25 H -0.278 1.278 26 C 0.577 3.423 27 O -0.487 6.487 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.181 0.819 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.169 0.831 35 H 0.168 0.832 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.070 0.930 40 H -0.004 1.004 41 H -0.004 1.004 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.138 14.469 21.486 36.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.053 4.053 3 C -0.103 4.103 4 C -0.054 4.054 5 C -0.169 4.169 6 C -0.154 4.154 7 C -0.066 4.066 8 C 0.368 3.632 9 O -0.360 6.360 10 N -0.314 5.314 11 C 0.000 4.000 12 C 0.285 3.715 13 O -0.428 6.428 14 O -0.261 6.261 15 C 0.004 3.996 16 C -0.131 4.131 17 C -0.012 4.012 18 C -0.581 4.581 19 H 0.085 0.915 20 C -0.201 4.201 21 N -0.574 5.574 22 Si 0.796 3.204 23 H -0.183 1.183 24 H -0.204 1.204 25 H -0.204 1.204 26 C 0.369 3.631 27 O -0.360 6.360 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.199 0.801 32 H 0.177 0.823 33 H 0.171 0.829 34 H 0.186 0.814 35 H 0.186 0.814 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.014 0.986 41 H 0.014 0.986 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.832 14.290 21.004 36.231 hybrid contribution 1.248 -0.723 -1.013 1.762 sum -24.584 13.568 19.991 34.469 Atomic orbital electron populations 1.21013 0.87224 1.04933 1.04422 1.20608 0.98611 0.91556 0.94483 1.21804 0.92440 0.99902 0.96200 1.21141 0.94646 0.96365 0.93224 1.20420 0.91367 0.96308 1.08820 1.20385 0.95291 0.92350 1.07396 1.20978 0.89951 1.00563 0.95084 1.18799 0.83168 0.88002 0.73189 1.90801 1.84116 1.15950 1.45090 1.46279 1.08121 1.09025 1.67957 1.21389 0.85530 1.03046 0.90019 1.24567 0.78959 0.74194 0.93796 1.90679 1.54824 1.49276 1.48057 1.86452 1.38942 1.68636 1.32089 1.23215 0.98187 1.00619 0.77530 1.21477 0.93231 0.99746 0.98619 1.18948 0.95756 0.95530 0.91011 1.21652 1.06935 1.36510 0.92971 0.91491 1.26046 1.01773 0.96915 0.95337 1.70110 1.41072 1.48037 0.98213 0.85300 0.78452 0.77983 0.78713 1.18281 1.20364 1.20377 1.18802 0.90218 0.80929 0.73149 1.90798 1.46299 1.53719 1.45187 0.88710 0.88908 0.90357 0.80147 0.82313 0.82875 0.81385 0.81419 0.91977 0.91975 0.91108 0.91119 0.98557 0.98550 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.12 10.00 71.23 0.71 0.59 16 2 C -0.05 -0.37 5.89 -19.78 -0.12 -0.49 16 3 C -0.09 -0.51 9.68 22.36 0.22 -0.29 16 4 C -0.04 -0.41 10.09 22.44 0.23 -0.18 16 5 C -0.17 -3.17 6.41 -20.00 -0.13 -3.30 16 6 C -0.15 -2.93 6.41 -20.00 -0.13 -3.06 16 7 C -0.05 -0.60 9.74 22.44 0.22 -0.38 16 8 C 0.58 14.52 8.02 86.82 0.70 15.22 16 9 O -0.49 -14.37 17.68 -3.54 -0.06 -14.44 16 10 N -0.57 -14.17 2.11 -767.05 -1.62 -15.79 16 11 C 0.12 2.69 6.33 85.63 0.54 3.24 16 12 C 0.44 14.21 8.03 71.24 0.57 14.78 16 13 O -0.54 -21.23 16.18 21.96 0.36 -20.88 16 14 O -0.35 -11.69 10.22 -51.32 -0.52 -12.21 16 15 C 0.08 3.04 5.47 71.98 0.39 3.43 16 16 C -0.09 -3.96 5.53 30.59 0.17 -3.79 16 17 C 0.02 1.33 4.97 29.85 0.15 1.48 16 18 C -0.54 -31.18 9.11 25.60 0.23 -30.95 16 19 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 20 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 21 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 22 Si 0.97 44.60 29.54 68.60 2.03 46.63 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 C 0.58 14.43 8.02 86.82 0.70 15.13 16 27 O -0.49 -14.27 17.68 -3.52 -0.06 -14.33 16 28 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.09 -0.16 8.08 -2.38 -0.02 -0.18 16 30 H 0.08 0.09 8.08 -2.38 -0.02 0.07 16 31 H 0.18 -0.28 8.06 -2.91 -0.02 -0.30 16 32 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 33 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 34 H 0.17 2.78 7.96 -2.39 -0.02 2.76 16 35 H 0.17 2.78 7.97 -2.39 -0.02 2.76 16 36 H 0.06 2.49 8.13 -2.39 -0.02 2.47 16 37 H 0.06 2.49 8.13 -2.39 -0.02 2.47 16 38 H 0.07 2.87 8.14 -2.39 -0.02 2.86 16 39 H 0.07 2.87 8.14 -2.38 -0.02 2.85 16 40 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.00 -0.23 8.14 -2.39 -0.02 -0.24 16 42 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -81.04 376.45 6.36 -74.68 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: 1.04 Total: 2.03 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 4.91 Total: 11.71 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -1.33 Total: -73.19 kcal Atomic # 8 Polarization: -61.57 SS G_CDS: -0.29 Total: -61.86 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -81.04 6.36 -74.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914623272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.086 kcal (2) G-P(sol) polarization free energy of solvation -81.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds