Wall clock time and date at job start Tue Mar 31 2020 16:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47237 * 2 1 4 4 C 1.53006 * 109.46954 * 119.99729 * 2 1 3 5 5 H 1.08995 * 109.46896 * 304.57232 * 4 2 1 6 6 O 1.45198 * 109.46824 * 64.57144 * 4 2 1 7 7 C 1.34227 * 117.00410 * 269.99756 * 6 4 2 8 8 O 1.20832 * 119.99591 * 0.02562 * 7 6 4 9 9 C 1.50699 * 120.00314 * 180.02562 * 7 6 4 10 10 S 1.81000 * 109.46917 * 180.02562 * 9 7 6 11 11 C 1.76206 * 99.99793 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00120 * 359.97438 * 11 10 9 13 13 C 1.38801 * 119.99708 * 179.97438 * 11 10 9 14 14 N 1.31621 * 120.00481 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99591 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47447 * 90.00061 * 15 13 11 17 17 H 1.48502 * 109.47156 * 210.00243 * 15 13 11 18 18 H 1.48504 * 109.47092 * 329.99727 * 15 13 11 19 19 C 1.50702 * 109.46955 * 184.57297 * 4 2 1 20 20 O 1.21281 * 119.99628 * 269.39228 * 19 4 2 21 21 N 1.34773 * 119.99906 * 89.38834 * 19 4 2 22 22 C 1.47148 * 120.98262 * 355.42368 * 21 19 4 23 23 C 1.53300 * 108.38268 * 129.73893 * 22 21 19 24 24 O 1.42966 * 109.22376 * 52.30111 * 23 22 21 25 25 C 1.42962 * 114.16417 * 297.42182 * 24 23 22 26 26 C 1.47154 * 120.97698 * 175.70420 * 21 19 4 27 27 H 1.08996 * 109.46754 * 300.00162 * 1 2 3 28 28 H 1.08996 * 109.47229 * 59.99843 * 1 2 3 29 29 H 1.08998 * 109.46995 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46754 * 239.99837 * 2 1 3 31 31 H 1.08994 * 109.47443 * 175.32318 * 3 2 1 32 32 H 1.09006 * 109.47005 * 295.32466 * 3 2 1 33 33 H 1.08999 * 109.47254 * 55.31954 * 3 2 1 34 34 H 1.09001 * 109.46800 * 299.99795 * 9 7 6 35 35 H 1.08996 * 109.47270 * 59.99676 * 9 7 6 36 36 H 0.96995 * 120.00359 * 179.97438 * 14 13 11 37 37 H 1.09000 * 109.68178 * 249.45928 * 22 21 19 38 38 H 1.08993 * 109.68349 * 10.01630 * 22 21 19 39 39 H 1.08997 * 109.51154 * 292.37714 * 23 22 21 40 40 H 1.09003 * 109.55370 * 172.24969 * 23 22 21 41 41 H 1.09001 * 109.51138 * 302.64961 * 25 24 23 42 42 H 1.08998 * 109.55178 * 182.52890 * 25 24 23 43 43 H 1.08997 * 109.68419 * 349.98930 * 26 21 19 44 44 H 1.09002 * 109.67733 * 110.50598 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6114 -0.2568 2.1373 6 8 1.6471 -2.1180 1.1960 7 6 0.4639 -2.4396 1.7422 8 8 -0.2210 -1.5821 2.2477 9 6 -0.0102 -3.8699 1.7249 10 16 -1.6274 -3.9792 2.5305 11 6 -1.9320 -5.7075 2.3719 12 1 -1.2055 -6.3414 1.8854 13 6 -3.1056 -6.2541 2.8722 14 7 -3.9909 -5.4816 3.4655 15 14 -3.4289 -8.0861 2.7034 16 1 -2.8855 -8.7960 3.8891 17 1 -4.8918 -8.3243 2.6112 18 1 -2.7663 -8.5946 1.4754 19 6 3.5428 -0.6239 1.3073 20 8 4.2264 -1.4833 0.7925 21 7 4.1270 0.4182 1.9311 22 6 3.3221 1.5232 2.4755 23 6 3.7531 1.7661 3.9265 24 8 5.1724 1.9307 3.9747 25 6 5.9096 0.7809 3.5524 26 6 5.5891 0.4875 2.0824 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1268 1.4436 0.0838 32 1 1.7468 1.9316 -0.9290 33 1 1.6099 1.9800 0.8451 34 1 -0.0945 -4.2123 0.6935 35 1 0.7049 -4.4962 2.2583 36 1 -4.8112 -5.8635 3.8148 37 1 3.4905 2.4249 1.8867 38 1 2.2656 1.2570 2.4461 39 1 3.4646 0.9124 4.5397 40 1 3.2691 2.6664 4.3050 41 1 5.6290 -0.0764 4.1644 42 1 6.9772 0.9719 3.6612 43 1 6.0337 -0.4645 1.7925 44 1 5.9858 1.2846 1.4535 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915386180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:57 Heat of formation + Delta-G solvation = -155.099233 kcal Electronic energy + Delta-G solvation = -27232.641439 eV Core-core repulsion = 23277.236254 eV Total energy + Delta-G solvation = -3955.405184 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.29816 -40.04694 -38.56860 -36.55059 -35.63099 -34.66534 -32.50948 -31.94100 -30.02809 -28.86647 -27.44628 -27.03311 -25.56238 -24.55580 -22.67704 -21.39767 -20.89288 -19.34176 -18.35818 -17.59359 -17.43610 -16.86554 -16.58205 -16.30913 -15.81682 -15.65078 -15.32537 -15.08923 -14.86461 -14.66445 -14.21516 -13.86579 -13.64906 -13.37442 -13.12778 -13.05185 -12.70056 -12.51316 -12.45756 -12.28822 -12.01140 -11.87441 -11.80542 -11.37661 -11.18774 -11.12147 -11.08828 -10.99556 -10.83903 -10.60114 -10.40893 -10.10727 -9.93328 -9.80109 -9.13595 -8.99497 -8.40481 -6.63344 -6.29880 -4.02587 1.96405 2.29143 2.53924 2.80380 3.19553 3.23442 3.27742 3.36268 3.48523 4.00212 4.12896 4.26379 4.38870 4.42391 4.57883 4.61640 4.73149 4.74625 4.79128 4.98712 5.04271 5.06360 5.16160 5.18122 5.26079 5.28241 5.33953 5.46027 5.48096 5.50038 5.60367 5.69717 5.74397 5.85782 5.93769 6.03505 6.05874 6.29774 6.53449 6.62962 6.85584 7.53777 7.76182 8.05183 8.28440 9.16085 10.77609 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.019742 B = 0.002705 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.944440 B =10347.702887 C =10675.556113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.158 4.158 4 C 0.075 3.925 5 H 0.106 0.894 6 O -0.333 6.333 7 C 0.479 3.521 8 O -0.482 6.482 9 C -0.129 4.129 10 S -0.055 6.055 11 C -0.537 4.537 12 H 0.076 0.924 13 C 0.075 3.925 14 N -0.868 5.868 15 Si 0.921 3.079 16 H -0.276 1.276 17 H -0.281 1.281 18 H -0.271 1.271 19 C 0.528 3.472 20 O -0.512 6.512 21 N -0.615 5.615 22 C 0.063 3.937 23 C 0.043 3.957 24 O -0.379 6.379 25 C 0.047 3.953 26 C 0.078 3.922 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.270 0.730 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.111 0.889 41 H 0.058 0.942 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.845 16.973 -3.104 24.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 C -0.216 4.216 4 C 0.016 3.984 5 H 0.124 0.876 6 O -0.250 6.250 7 C 0.321 3.679 8 O -0.367 6.367 9 C -0.277 4.277 10 S 0.172 5.828 11 C -0.685 4.685 12 H 0.095 0.905 13 C -0.134 4.134 14 N -0.503 5.503 15 Si 0.747 3.253 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.195 1.195 19 C 0.315 3.685 20 O -0.385 6.385 21 N -0.352 5.352 22 C -0.060 4.060 23 C -0.034 4.034 24 O -0.297 6.297 25 C -0.030 4.030 26 C -0.044 4.044 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.078 0.922 40 H 0.128 0.872 41 H 0.077 0.923 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 16.293 17.756 -2.621 24.241 hybrid contribution 0.345 -2.264 -0.702 2.395 sum 16.639 15.492 -3.322 22.976 Atomic orbital electron populations 1.21914 0.92606 1.03210 1.02543 1.21488 0.97979 0.96139 0.96777 1.22222 1.01180 0.94990 1.03174 1.22585 0.91566 0.82390 1.01818 0.87603 1.86666 1.38176 1.26831 1.73339 1.23432 0.78296 0.92076 0.74098 1.90654 1.54480 1.50243 1.41369 1.23326 1.06223 0.90809 1.07293 1.85339 1.11244 1.12132 1.74132 1.22852 1.08117 0.92555 1.44938 0.90547 1.24993 0.94839 0.99302 0.94307 1.69998 1.08998 1.35620 1.35655 0.86123 0.77643 0.82704 0.78808 1.20173 1.20694 1.19545 1.20198 0.89543 0.80946 0.77816 1.90726 1.64896 1.38966 1.43951 1.48082 1.07309 1.21752 1.58090 1.22893 0.96907 0.90552 0.95637 1.23064 0.81977 1.03322 0.95059 1.87972 1.17389 1.37419 1.86892 1.23013 0.97399 0.89172 0.93459 1.22321 0.80142 1.04350 0.97565 0.91348 0.92076 0.92094 0.89454 0.92060 0.91346 0.91582 0.87751 0.87822 0.92056 0.89510 0.88023 0.92178 0.87150 0.92349 0.87372 0.87901 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 7.84 37.16 0.29 -1.53 16 2 C -0.10 -1.21 2.74 -90.61 -0.25 -1.46 16 3 C -0.16 -1.31 7.33 37.16 0.27 -1.03 16 4 C 0.08 1.02 1.81 -27.88 -0.05 0.97 16 5 H 0.11 1.36 5.19 -51.93 -0.27 1.09 16 6 O -0.33 -5.68 9.52 -45.33 -0.43 -6.11 16 7 C 0.48 9.01 6.42 36.01 0.23 9.24 16 8 O -0.48 -9.61 13.00 -18.75 -0.24 -9.86 16 9 C -0.13 -2.63 6.27 36.01 0.23 -2.41 16 10 S -0.05 -1.43 20.58 -107.50 -2.21 -3.64 16 11 C -0.54 -14.95 9.50 30.94 0.29 -14.66 16 12 H 0.08 2.03 7.80 -52.49 -0.41 1.62 16 13 C 0.08 2.10 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -25.47 13.22 55.49 0.73 -24.74 16 15 Si 0.92 21.09 29.55 -169.99 -5.02 16.07 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 C 0.53 7.06 6.00 -10.99 -0.07 7.00 16 20 O -0.51 -8.64 16.23 -11.99 -0.19 -8.83 16 21 N -0.62 -6.10 2.45 -172.28 -0.42 -6.52 16 22 C 0.06 0.46 4.21 -3.53 -0.01 0.45 16 23 C 0.04 0.31 6.99 37.31 0.26 0.57 16 24 O -0.38 -3.25 10.74 -35.23 -0.38 -3.63 16 25 C 0.05 0.34 6.98 37.31 0.26 0.61 16 26 C 0.08 0.66 6.62 -3.53 -0.02 0.63 16 27 H 0.07 0.87 7.77 -51.93 -0.40 0.47 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.94 6.06 -51.93 -0.31 0.62 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.51 5.43 -51.93 -0.28 0.23 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.45 6.32 -51.93 -0.33 0.12 16 34 H 0.10 2.00 8.14 -51.91 -0.42 1.58 16 35 H 0.10 2.01 8.14 -51.92 -0.42 1.59 16 36 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.09 0.51 7.27 -51.93 -0.38 0.13 16 38 H 0.10 0.74 4.19 -51.93 -0.22 0.52 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.96 7.12 -51.93 -0.37 0.59 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 361.69 15.07 5.45 5.45 Total: -1.00 -34.06 361.69 -7.72 -41.78 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.33 Total: -0.35 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 1.34 Total: 0.37 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 0.31 Total: -31.26 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -1.25 Total: -28.42 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.21 Total: -3.64 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.06 -7.72 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915386180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.315 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds