Wall clock time and date at job start Tue Mar 31 2020 16:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47213 * 2 1 4 4 C 1.53005 * 109.47084 * 119.99319 * 2 1 3 5 5 H 1.08994 * 109.47344 * 305.06611 * 4 2 1 6 6 O 1.45196 * 109.47159 * 185.06077 * 4 2 1 7 7 C 1.34228 * 117.00031 * 90.00723 * 6 4 2 8 8 O 1.20826 * 119.99633 * 359.71581 * 7 6 4 9 9 C 1.50694 * 120.00038 * 179.97438 * 7 6 4 10 10 S 1.80996 * 109.47237 * 179.72167 * 9 7 6 11 11 C 1.76205 * 100.00280 * 180.02562 * 10 9 7 12 12 H 1.07997 * 119.99626 * 359.97438 * 11 10 9 13 13 C 1.38793 * 119.99907 * 180.02562 * 11 10 9 14 14 N 1.31625 * 120.00441 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99798 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47084 * 59.99606 * 15 13 11 17 17 H 1.48499 * 109.47135 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.46940 * 299.99611 * 15 13 11 19 19 C 1.50706 * 109.46615 * 65.06048 * 4 2 1 20 20 O 1.21280 * 119.99590 * 84.47898 * 19 4 2 21 21 N 1.34773 * 120.00057 * 264.47554 * 19 4 2 22 22 C 1.47146 * 120.98255 * 3.77781 * 21 19 4 23 23 C 1.53716 * 108.16391 * 129.43188 * 22 21 19 24 24 O 1.42969 * 109.14505 * 52.53844 * 23 22 21 25 25 C 1.42965 * 114.16488 * 297.28676 * 24 23 22 26 26 C 1.47158 * 120.97974 * 184.06015 * 21 19 4 27 27 H 1.08996 * 109.47025 * 295.30248 * 1 2 3 28 28 H 1.08997 * 109.46668 * 55.29924 * 1 2 3 29 29 H 1.08996 * 109.46823 * 175.30155 * 1 2 3 30 30 H 1.08998 * 109.47183 * 239.99328 * 2 1 3 31 31 H 1.09001 * 109.46955 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46351 * 299.99629 * 3 2 1 33 33 H 1.08994 * 109.46955 * 59.99909 * 3 2 1 34 34 H 1.09007 * 109.47417 * 299.72002 * 9 7 6 35 35 H 1.09005 * 109.47428 * 59.72291 * 9 7 6 36 36 H 0.96999 * 120.00470 * 179.97438 * 14 13 11 37 37 H 1.09002 * 109.68435 * 249.20868 * 22 21 19 38 38 H 1.08997 * 109.68331 * 9.76242 * 22 21 19 39 39 H 1.08999 * 109.65688 * 292.57168 * 23 22 21 40 40 H 1.09003 * 109.48651 * 172.39611 * 23 22 21 41 41 H 1.08998 * 109.51450 * 302.66509 * 25 24 23 42 42 H 1.08995 * 109.54940 * 182.52893 * 25 24 23 43 43 H 1.08998 * 109.68270 * 350.23096 * 26 21 19 44 44 H 1.09004 * 109.67967 * 110.75387 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6045 -0.2623 2.1370 6 8 3.4870 -0.6174 1.3113 7 6 3.9948 0.4402 1.9634 8 8 3.2547 1.2551 2.4614 9 6 5.4879 0.6142 2.0694 10 16 5.8550 2.1270 2.9927 11 6 7.6162 2.0830 2.9646 12 1 8.1282 1.2713 2.4692 13 6 8.3455 3.0908 3.5801 14 7 7.7215 4.0798 4.1843 15 14 10.2128 3.0438 3.5509 16 1 10.6865 3.0661 2.1436 17 1 10.7491 4.2259 4.2721 18 1 10.6870 1.8022 4.2132 19 6 1.6426 -2.1736 1.1884 20 8 2.3313 -2.9656 0.5808 21 7 0.5219 -2.5922 1.8090 22 6 -0.3728 -1.6375 2.4823 23 6 -1.8054 -1.8918 1.9865 24 8 -2.1186 -3.2773 2.1486 25 6 -1.2958 -4.1573 1.3788 26 6 0.1600 -4.0182 1.8386 27 1 -0.3633 0.4392 0.9290 28 1 -0.3632 0.5850 -0.8449 29 1 -0.3633 -1.0242 -0.0842 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 5.9176 -0.2421 2.5894 35 1 5.9173 0.6854 1.0700 36 1 8.2312 4.7840 4.6147 37 1 -0.3230 -1.7856 3.5610 38 1 -0.0738 -0.6184 2.2370 39 1 -1.8823 -1.6219 0.9333 40 1 -2.5038 -1.2903 2.5685 41 1 -1.3707 -3.8955 0.3233 42 1 -1.6266 -5.1857 1.5234 43 1 0.8120 -4.5765 1.1668 44 1 0.2633 -4.4022 2.8535 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915386182.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:00 Heat of formation + Delta-G solvation = -178.107121 kcal Electronic energy + Delta-G solvation = -27234.521251 eV Core-core repulsion = 23278.118370 eV Total energy + Delta-G solvation = -3956.402881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.40313 -41.18677 -39.42482 -37.83873 -36.53320 -35.68953 -34.62548 -32.56467 -31.58595 -29.87972 -28.42567 -27.84668 -27.56045 -25.20627 -23.57438 -22.74698 -21.74628 -20.39686 -20.00315 -19.09976 -18.60148 -17.90131 -17.68291 -17.17344 -16.90594 -16.75430 -16.60087 -16.09561 -16.07903 -15.92635 -15.46770 -15.05846 -14.83150 -14.61358 -14.36439 -14.13913 -13.89323 -13.68752 -13.37070 -13.30688 -13.18688 -13.09439 -12.89462 -12.71021 -12.68459 -12.42422 -12.29392 -12.10513 -11.87393 -11.81458 -11.66831 -11.40995 -11.21061 -11.16058 -10.89364 -10.42273 -9.77383 -8.73868 -8.38943 -6.18003 0.69194 1.02230 1.22952 1.37201 1.43367 1.47848 1.55946 2.02272 2.22509 2.82541 2.96047 3.04136 3.23475 3.42011 3.49973 3.66887 3.68537 3.88759 3.98498 4.06238 4.07200 4.09957 4.12716 4.20115 4.38451 4.39612 4.42254 4.59119 4.66539 4.68559 4.73474 4.79146 4.83718 4.87801 4.98812 5.04197 5.21292 5.22230 5.30353 5.39775 5.96142 6.07489 6.16504 6.56549 6.77522 7.03067 8.69839 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.025237 B = 0.002573 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.199544 B =10881.496385 C =11146.406857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 C -0.145 4.145 4 C 0.068 3.932 5 H 0.113 0.887 6 O -0.340 6.340 7 C 0.491 3.509 8 O -0.497 6.497 9 C -0.113 4.113 10 S -0.117 6.117 11 C -0.554 4.554 12 H 0.082 0.918 13 C 0.020 3.980 14 N -0.907 5.907 15 Si 0.996 3.004 16 H -0.263 1.263 17 H -0.276 1.276 18 H -0.264 1.264 19 C 0.528 3.472 20 O -0.555 6.555 21 N -0.606 5.606 22 C 0.051 3.949 23 C 0.047 3.953 24 O -0.390 6.390 25 C 0.054 3.946 26 C 0.072 3.928 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.027 0.973 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.273 0.727 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.132 0.868 41 H 0.059 0.941 42 H 0.130 0.870 43 H 0.092 0.908 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.474 -13.445 -7.200 26.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.202 4.202 4 C 0.010 3.990 5 H 0.131 0.869 6 O -0.257 6.257 7 C 0.333 3.667 8 O -0.384 6.384 9 C -0.261 4.261 10 S 0.110 5.890 11 C -0.701 4.701 12 H 0.100 0.900 13 C -0.186 4.186 14 N -0.543 5.543 15 Si 0.818 3.182 16 H -0.188 1.188 17 H -0.201 1.201 18 H -0.188 1.188 19 C 0.315 3.685 20 O -0.433 6.433 21 N -0.341 5.341 22 C -0.071 4.071 23 C -0.030 4.030 24 O -0.309 6.309 25 C -0.023 4.023 26 C -0.050 4.050 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.126 0.874 39 H 0.088 0.912 40 H 0.150 0.850 41 H 0.078 0.922 42 H 0.148 0.852 43 H 0.111 0.889 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.215 -12.785 -6.694 26.491 hybrid contribution 2.400 -0.604 -0.465 2.518 sum -19.815 -13.388 -7.159 24.963 Atomic orbital electron populations 1.22141 0.90984 1.02888 1.04649 1.21471 0.98772 0.96342 0.95236 1.21908 0.99825 0.94900 1.03566 1.22978 0.78843 0.93952 1.03230 0.86935 1.86595 1.24055 1.45825 1.69256 1.22905 0.91311 0.78439 0.74088 1.90633 1.60759 1.42438 1.44578 1.23119 0.90772 1.05270 1.06989 1.85342 1.07873 1.25332 1.70411 1.23170 0.91097 1.13465 1.42401 0.89954 1.26054 1.05191 0.93762 0.93589 1.70129 1.38424 1.11650 1.34123 0.85034 0.75908 0.78243 0.79036 1.18766 1.20103 1.18829 1.20173 0.80857 0.89076 0.78408 1.90697 1.53039 1.56503 1.43014 1.48137 1.22857 1.09354 1.53756 1.23138 0.91028 0.94191 0.98760 1.23302 0.94209 0.82967 1.02536 1.87978 1.57660 1.16767 1.68471 1.23056 0.87816 0.96391 0.95070 1.22519 0.98114 0.80510 1.03837 0.90187 0.89312 0.91889 0.90360 0.95366 0.89792 0.91756 0.86670 0.86454 0.91745 0.89259 0.87412 0.91151 0.84985 0.92219 0.85249 0.88921 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 7.30 71.98 0.53 -1.52 16 2 C -0.10 -2.20 2.69 -10.79 -0.03 -2.23 16 3 C -0.14 -3.64 7.78 71.98 0.56 -3.08 16 4 C 0.07 1.84 1.85 29.85 0.06 1.89 16 5 H 0.11 2.85 5.17 -2.39 -0.01 2.84 16 6 O -0.34 -11.72 9.42 -45.88 -0.43 -12.15 16 7 C 0.49 18.68 6.13 71.23 0.44 19.12 16 8 O -0.50 -20.19 12.98 21.97 0.29 -19.91 16 9 C -0.11 -4.67 6.27 71.23 0.45 -4.23 16 10 S -0.12 -6.22 20.58 -56.49 -1.16 -7.38 16 11 C -0.55 -31.14 9.50 67.95 0.65 -30.49 16 12 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 13 C 0.02 1.09 5.49 84.86 0.47 1.56 16 14 N -0.91 -54.09 13.22 21.65 0.29 -53.80 16 15 Si 1.00 43.04 29.55 68.60 2.03 45.07 16 16 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 17 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 19 C 0.53 14.00 6.11 87.66 0.54 14.54 16 20 O -0.56 -18.88 16.29 12.58 0.20 -18.67 16 21 N -0.61 -11.54 2.75 -816.51 -2.25 -13.79 16 22 C 0.05 0.67 5.28 86.50 0.46 1.13 16 23 C 0.05 0.45 6.80 72.22 0.49 0.95 16 24 O -0.39 -5.24 10.74 -148.98 -1.60 -6.84 16 25 C 0.05 0.61 6.99 72.08 0.50 1.11 16 26 C 0.07 1.13 6.65 86.35 0.57 1.71 16 27 H 0.08 0.88 6.34 -2.39 -0.02 0.86 16 28 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.81 5.28 -2.39 -0.01 0.80 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.03 0.86 6.27 -2.39 -0.01 0.85 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 1.73 7.19 -2.39 -0.02 1.71 16 34 H 0.12 4.48 8.14 -2.39 -0.02 4.46 16 35 H 0.12 4.52 8.14 -2.39 -0.02 4.50 16 36 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.11 1.37 3.17 -2.39 -0.01 1.36 16 39 H 0.07 0.59 6.32 -2.39 -0.02 0.57 16 40 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.09 1.70 7.07 -2.39 -0.02 1.68 16 44 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -74.91 360.02 4.05 -70.86 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 1.02 Total: 16.17 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 5.67 Total: 0.45 kcal Atomic # 7 Polarization: -65.63 SS G_CDS: -1.96 Total: -67.60 kcal Atomic # 8 Polarization: -56.03 SS G_CDS: -1.54 Total: -57.57 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -6.22 SS G_CDS: -1.16 Total: -7.38 kcal Total: -74.91 4.05 -70.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915386182.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.247 kcal (2) G-P(sol) polarization free energy of solvation -74.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds