Wall clock time and date at job start Tue Mar 31 2020 17:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 113.99760 * 2 1 4 4 C 1.52999 * 109.47301 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47381 * 174.99577 * 4 3 2 6 6 C 1.53003 * 109.46998 * 54.99899 * 4 3 2 7 7 O 1.45197 * 109.47291 * 295.00189 * 4 3 2 8 8 C 1.34811 * 117.00149 * 209.99751 * 7 4 3 9 9 O 1.21554 * 119.99987 * 359.97438 * 8 7 4 10 10 C 1.47098 * 120.00074 * 180.02562 * 8 7 4 11 11 C 1.43204 * 119.99977 * 359.97438 * 10 8 7 12 12 N 5.29191 * 122.42457 * 107.58256 * 2 1 3 13 13 C 1.37629 * 120.00048 * 180.02562 * 10 8 7 14 14 C 1.46714 * 120.00139 * 172.70185 * 13 10 8 15 15 C 1.40144 * 120.15792 * 331.66561 * 14 13 10 16 16 C 1.37866 * 119.93586 * 179.73822 * 15 14 13 17 17 C 1.38329 * 120.27261 * 0.51394 * 16 15 14 18 18 C 1.39045 * 120.32414 * 359.76259 * 17 16 15 19 19 O 1.35761 * 119.97720 * 179.97438 * 18 17 16 20 20 C 1.34831 * 117.00431 * 185.94848 * 19 18 17 21 21 H 1.07999 * 119.99777 * 354.91076 * 20 19 18 22 22 C 1.38658 * 119.99810 * 174.90805 * 20 19 18 23 23 N 1.31550 * 120.00331 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99576 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47516 * 89.99948 * 24 22 20 26 26 H 1.48507 * 109.46938 * 210.00089 * 24 22 20 27 27 H 1.48500 * 109.47211 * 329.99493 * 24 22 20 28 28 C 1.38511 * 120.05609 * 359.97438 * 18 17 16 29 29 H 1.08998 * 109.47676 * 299.99856 * 1 2 3 30 30 H 1.09007 * 109.47208 * 60.00309 * 1 2 3 31 31 H 1.09000 * 109.47365 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47637 * 59.99925 * 3 2 1 33 33 H 1.08997 * 109.47369 * 299.99805 * 3 2 1 34 34 H 1.08992 * 109.47416 * 179.97438 * 6 4 3 35 35 H 1.08999 * 109.47089 * 60.00030 * 6 4 3 36 36 H 1.09003 * 109.47441 * 300.00357 * 6 4 3 37 37 H 1.07999 * 119.99523 * 352.70401 * 13 10 8 38 38 H 1.07993 * 120.03159 * 359.97438 * 15 14 13 39 39 H 1.08002 * 119.86118 * 180.25445 * 16 15 14 40 40 H 1.07993 * 119.84050 * 179.74120 * 17 16 15 41 41 H 0.97007 * 120.00442 * 180.02562 * 23 22 20 42 42 H 1.07999 * 120.13845 * 179.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 1 3.9784 2.1766 -0.0890 6 6 3.9789 0.3195 -1.1807 7 8 3.9717 0.5700 1.2416 8 6 5.1879 0.9222 1.7045 9 8 5.8652 1.7209 1.0874 10 6 5.6957 0.3390 2.9558 11 6 4.8980 -0.6024 3.6825 12 7 4.2664 -1.3494 4.2582 13 6 6.9371 0.6990 3.4287 14 6 7.3781 0.2445 4.7521 15 6 6.4366 -0.0147 5.7573 16 6 6.8557 -0.4468 6.9977 17 6 8.2036 -0.6158 7.2585 18 6 9.1476 -0.3564 6.2711 19 8 10.4687 -0.5241 6.5349 20 6 11.3377 -0.1389 5.5786 21 1 10.9711 0.2042 4.6224 22 6 12.7019 -0.1833 5.8228 23 7 13.1483 -0.6008 6.9877 24 14 13.9057 0.3510 4.4981 25 1 14.1800 1.8040 4.6353 26 1 15.1734 -0.4082 4.6459 27 1 13.3208 0.0819 3.1600 28 6 8.7413 0.0731 5.0185 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.6885 1.8465 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 5.0655 0.2338 -1.1805 35 1 3.6514 0.7809 -2.1122 36 1 3.5359 -0.6724 -1.0912 37 1 7.5866 1.3160 2.8255 38 1 5.3835 0.1202 5.5594 39 1 6.1288 -0.6502 7.7701 40 1 8.5244 -0.9506 8.2338 41 1 14.1027 -0.6315 7.1587 42 1 9.4734 0.2754 4.2507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917618528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:10 Heat of formation + Delta-G solvation = -78.163663 kcal Electronic energy + Delta-G solvation = -26697.113702 eV Core-core repulsion = 22609.600743 eV Total energy + Delta-G solvation = -4087.512959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.70654 -39.37442 -38.41052 -37.49204 -36.57982 -36.10587 -33.71243 -32.69124 -32.34446 -30.15817 -28.99266 -27.74606 -26.16575 -25.69096 -24.98358 -22.70055 -21.92470 -21.03333 -20.87590 -18.98242 -18.12900 -17.37419 -16.89813 -16.67912 -16.17684 -15.89015 -15.53079 -15.45505 -15.34484 -14.69377 -14.42374 -14.01575 -13.85295 -13.76039 -13.64180 -13.35757 -13.08215 -12.99651 -12.78433 -12.53147 -12.45596 -12.34690 -12.20554 -11.80529 -11.75336 -11.66038 -11.30623 -11.07618 -11.02625 -10.92534 -10.79738 -10.61013 -10.52346 -10.06461 -9.85611 -9.61075 -8.95804 -8.20104 -7.49029 -6.57102 -4.17760 0.19381 1.98958 2.12560 2.32957 2.40150 2.94060 3.06973 3.08001 3.12706 3.36657 3.58584 3.86474 3.94555 4.31056 4.36433 4.45402 4.59525 4.81957 4.86332 4.94267 4.97785 4.99729 5.02313 5.06222 5.20780 5.33511 5.34091 5.37927 5.54842 5.55381 5.62994 5.71471 5.91004 5.95750 6.06663 6.22487 6.42804 6.49383 6.74397 6.78868 6.95282 6.99068 7.18711 7.47109 7.50653 7.71965 7.84706 8.87498 9.52577 10.60028 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017240 B = 0.002442 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.771592 B =11465.307662 C =12806.246202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.064 3.936 4 C 0.090 3.910 5 H 0.102 0.898 6 C -0.167 4.167 7 O -0.337 6.337 8 C 0.527 3.473 9 O -0.506 6.506 10 C -0.140 4.140 11 C 0.269 3.731 12 N -0.415 5.415 13 C 0.113 3.887 14 C -0.079 4.079 15 C -0.173 4.173 16 C -0.082 4.082 17 C -0.156 4.156 18 C 0.143 3.857 19 O -0.171 6.171 20 C -0.397 4.397 21 H 0.094 0.906 22 C 0.042 3.958 23 N -0.857 5.857 24 Si 0.942 3.058 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.266 1.266 28 C -0.185 4.185 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.162 0.838 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.272 0.728 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.604 5.444 -13.434 23.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C -0.013 4.013 4 C 0.035 3.965 5 H 0.120 0.880 6 C -0.224 4.224 7 O -0.254 6.254 8 C 0.372 3.628 9 O -0.396 6.396 10 C -0.145 4.145 11 C -0.045 4.045 12 N -0.091 5.091 13 C 0.090 3.910 14 C -0.080 4.080 15 C -0.192 4.192 16 C -0.100 4.100 17 C -0.175 4.175 18 C 0.089 3.911 19 O -0.074 6.074 20 C -0.473 4.473 21 H 0.111 0.889 22 C -0.163 4.163 23 N -0.491 5.491 24 Si 0.766 3.234 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.190 1.190 28 C -0.205 4.205 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.180 0.820 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.082 0.918 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.955 4.227 -12.477 23.083 hybrid contribution 0.631 0.891 -1.002 1.481 sum -18.324 5.118 -13.479 23.316 Atomic orbital electron populations 1.22760 0.80932 1.03019 0.99886 1.87978 1.19638 1.26792 1.95362 1.22662 0.91399 0.85890 1.01367 1.22849 0.92936 0.98447 0.82289 0.88026 1.22110 1.02313 1.01583 0.96401 1.86766 1.33736 1.64879 1.40008 1.20443 0.79828 0.78813 0.83717 1.90874 1.57520 1.33184 1.58000 1.17059 0.96093 1.05428 0.95945 1.24888 0.93387 0.93377 0.92881 1.81160 1.08817 1.10098 1.09046 1.23470 0.90133 0.85490 0.91893 1.18598 0.93825 1.03494 0.92036 1.21133 0.98036 1.05767 0.94288 1.20609 0.94668 0.98398 0.96336 1.20547 0.91634 1.06310 0.99042 1.19210 0.86184 0.93473 0.92281 1.84017 1.09965 1.70915 1.42546 1.21319 0.86121 1.45431 0.94437 0.88905 1.25314 0.96730 0.96492 0.97798 1.70028 1.15186 1.42233 1.21685 0.85700 0.79252 0.78867 0.79597 1.19719 1.20184 1.19010 1.21401 0.94074 1.06781 0.98218 0.93967 0.94114 0.89461 0.92185 0.91018 0.91659 0.90846 0.90514 0.82039 0.86659 0.86239 0.85822 0.91797 0.84315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.81 9.79 -38.80 -0.38 -4.19 16 3 C 0.06 0.51 5.82 37.16 0.22 0.73 16 4 C 0.09 0.87 2.98 -26.73 -0.08 0.79 16 5 H 0.10 0.91 7.16 -51.93 -0.37 0.54 16 6 C -0.17 -1.50 9.35 37.16 0.35 -1.15 16 7 O -0.34 -4.32 9.39 -43.58 -0.41 -4.73 16 8 C 0.53 7.00 7.85 34.32 0.27 7.27 16 9 O -0.51 -7.11 15.56 -19.31 -0.30 -7.41 16 10 C -0.14 -1.93 5.83 -104.60 -0.61 -2.54 16 11 C 0.27 4.19 11.25 -22.50 -0.25 3.94 16 12 N -0.41 -7.11 17.85 41.80 0.75 -6.37 16 13 C 0.11 1.53 9.47 -36.38 -0.34 1.19 16 14 C -0.08 -1.32 5.60 -105.12 -0.59 -1.91 16 15 C -0.17 -2.90 8.33 -39.00 -0.32 -3.23 16 16 C -0.08 -1.39 10.02 -39.68 -0.40 -1.79 16 17 C -0.16 -3.04 9.99 -39.25 -0.39 -3.43 16 18 C 0.14 3.16 6.64 -39.18 -0.26 2.90 16 19 O -0.17 -4.56 9.76 0.01 0.00 -4.56 16 20 C -0.40 -10.36 9.48 30.89 0.29 -10.07 16 21 H 0.09 2.19 5.20 -52.49 -0.27 1.91 16 22 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 23 N -0.86 -24.04 13.67 55.48 0.76 -23.29 16 24 Si 0.94 19.46 29.55 -169.99 -5.02 14.44 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 26 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 27 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 28 C -0.19 -3.59 8.92 -38.84 -0.35 -3.93 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.77 7.56 -51.93 -0.39 0.38 16 37 H 0.16 1.85 7.61 -52.49 -0.40 1.45 16 38 H 0.12 1.83 5.22 -52.49 -0.27 1.56 16 39 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 41 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.14 2.60 5.63 -52.49 -0.30 2.30 16 LS Contribution 374.74 15.07 5.65 5.65 Total: -1.00 -31.23 374.74 -5.36 -36.59 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -4.95 Total: 2.79 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -1.45 Total: -8.92 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 1.50 Total: -29.65 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -1.09 Total: -20.89 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.23 -5.36 -36.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917618528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.576 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds