Wall clock time and date at job start Tue Mar 31 2020 17:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 113.99760 * 2 1 4 4 C 1.52999 * 109.47301 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47381 * 174.99577 * 4 3 2 6 6 C 1.53003 * 109.46998 * 54.99899 * 4 3 2 7 7 O 1.45197 * 109.47291 * 295.00189 * 4 3 2 8 8 C 1.34811 * 117.00149 * 209.99751 * 7 4 3 9 9 O 1.21554 * 119.99987 * 359.97438 * 8 7 4 10 10 C 1.47098 * 120.00074 * 180.02562 * 8 7 4 11 11 C 1.43204 * 119.99977 * 359.97438 * 10 8 7 12 12 N 5.29191 * 122.42457 * 107.58256 * 2 1 3 13 13 C 1.37629 * 120.00048 * 180.02562 * 10 8 7 14 14 C 1.46714 * 120.00139 * 172.70185 * 13 10 8 15 15 C 1.40144 * 120.15792 * 331.66561 * 14 13 10 16 16 C 1.37866 * 119.93586 * 179.73822 * 15 14 13 17 17 C 1.38329 * 120.27261 * 0.51394 * 16 15 14 18 18 C 1.39045 * 120.32414 * 359.76259 * 17 16 15 19 19 O 1.35761 * 119.97720 * 179.97438 * 18 17 16 20 20 C 1.34831 * 117.00431 * 185.94848 * 19 18 17 21 21 H 1.07999 * 119.99777 * 354.91076 * 20 19 18 22 22 C 1.38658 * 119.99810 * 174.90805 * 20 19 18 23 23 N 1.31550 * 120.00331 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99576 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47516 * 89.99948 * 24 22 20 26 26 H 1.48507 * 109.46938 * 210.00089 * 24 22 20 27 27 H 1.48500 * 109.47211 * 329.99493 * 24 22 20 28 28 C 1.38511 * 120.05609 * 359.97438 * 18 17 16 29 29 H 1.08998 * 109.47676 * 299.99856 * 1 2 3 30 30 H 1.09007 * 109.47208 * 60.00309 * 1 2 3 31 31 H 1.09000 * 109.47365 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47637 * 59.99925 * 3 2 1 33 33 H 1.08997 * 109.47369 * 299.99805 * 3 2 1 34 34 H 1.08992 * 109.47416 * 179.97438 * 6 4 3 35 35 H 1.08999 * 109.47089 * 60.00030 * 6 4 3 36 36 H 1.09003 * 109.47441 * 300.00357 * 6 4 3 37 37 H 1.07999 * 119.99523 * 352.70401 * 13 10 8 38 38 H 1.07993 * 120.03159 * 359.97438 * 15 14 13 39 39 H 1.08002 * 119.86118 * 180.25445 * 16 15 14 40 40 H 1.07993 * 119.84050 * 179.74120 * 17 16 15 41 41 H 0.97007 * 120.00442 * 180.02562 * 23 22 20 42 42 H 1.07999 * 120.13845 * 179.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 1 3.9784 2.1766 -0.0890 6 6 3.9789 0.3195 -1.1807 7 8 3.9717 0.5700 1.2416 8 6 5.1879 0.9222 1.7045 9 8 5.8652 1.7209 1.0874 10 6 5.6957 0.3390 2.9558 11 6 4.8980 -0.6024 3.6825 12 7 4.2664 -1.3494 4.2582 13 6 6.9371 0.6990 3.4287 14 6 7.3781 0.2445 4.7521 15 6 6.4366 -0.0147 5.7573 16 6 6.8557 -0.4468 6.9977 17 6 8.2036 -0.6158 7.2585 18 6 9.1476 -0.3564 6.2711 19 8 10.4687 -0.5241 6.5349 20 6 11.3377 -0.1389 5.5786 21 1 10.9711 0.2042 4.6224 22 6 12.7019 -0.1833 5.8228 23 7 13.1483 -0.6008 6.9877 24 14 13.9057 0.3510 4.4981 25 1 14.1800 1.8040 4.6353 26 1 15.1734 -0.4082 4.6459 27 1 13.3208 0.0819 3.1600 28 6 8.7413 0.0731 5.0185 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.6885 1.8465 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 5.0655 0.2338 -1.1805 35 1 3.6514 0.7809 -2.1122 36 1 3.5359 -0.6724 -1.0912 37 1 7.5866 1.3160 2.8255 38 1 5.3835 0.1202 5.5594 39 1 6.1288 -0.6502 7.7701 40 1 8.5244 -0.9506 8.2338 41 1 14.1027 -0.6315 7.1587 42 1 9.4734 0.2754 4.2507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917618528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:08 Heat of formation + Delta-G solvation = -95.839729 kcal Electronic energy + Delta-G solvation = -26697.880194 eV Core-core repulsion = 22609.600743 eV Total energy + Delta-G solvation = -4088.279451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.71971 -40.92541 -39.26718 -38.81836 -37.56134 -37.53743 -35.02934 -34.20581 -33.43875 -31.55637 -30.53237 -28.32847 -27.48644 -26.77036 -26.24804 -23.85354 -23.35424 -22.34630 -21.85767 -20.16858 -19.83953 -18.54551 -18.17269 -17.41421 -17.11112 -16.97274 -16.78645 -16.54956 -16.38022 -16.09736 -15.91691 -15.54481 -15.25905 -14.85548 -14.81944 -14.54459 -14.22593 -14.12282 -13.95686 -13.76223 -13.66238 -13.48286 -13.21200 -13.18287 -12.88106 -12.64402 -12.49942 -12.39173 -12.35439 -12.09298 -12.01919 -11.84889 -11.50860 -11.34536 -11.17878 -10.75833 -10.64561 -9.61573 -9.12869 -8.45908 -6.14912 -1.02632 0.54548 0.68063 1.24335 1.31965 1.40459 1.48425 1.56847 1.74634 2.19126 2.33817 2.74313 2.76853 2.80435 3.11599 3.30948 3.43856 3.70525 3.79339 3.92373 4.00076 4.07868 4.19611 4.26065 4.29591 4.38404 4.47338 4.54694 4.55676 4.63751 4.69261 4.77322 4.84621 4.87945 4.92808 4.99962 5.10583 5.19854 5.34772 5.40244 5.49762 5.54276 5.95651 5.99543 6.18743 6.35052 6.60058 6.98607 7.74637 8.76433 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017240 B = 0.002442 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.771592 B =11465.307662 C =12806.246202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.062 3.938 4 C 0.080 3.920 5 H 0.112 0.888 6 C -0.163 4.163 7 O -0.350 6.350 8 C 0.533 3.467 9 O -0.511 6.511 10 C -0.127 4.127 11 C 0.276 3.724 12 N -0.441 5.441 13 C 0.120 3.880 14 C -0.072 4.072 15 C -0.163 4.163 16 C -0.075 4.075 17 C -0.167 4.167 18 C 0.110 3.890 19 O -0.225 6.225 20 C -0.414 4.414 21 H 0.110 0.890 22 C -0.021 4.021 23 N -0.918 5.918 24 Si 1.016 2.984 25 H -0.263 1.263 26 H -0.277 1.277 27 H -0.248 1.248 28 C -0.187 4.187 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.190 0.810 38 H 0.131 0.869 39 H 0.152 0.848 40 H 0.124 0.876 41 H 0.272 0.728 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.834 6.869 -16.064 27.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C -0.014 4.014 4 C 0.026 3.974 5 H 0.130 0.870 6 C -0.220 4.220 7 O -0.267 6.267 8 C 0.379 3.621 9 O -0.402 6.402 10 C -0.132 4.132 11 C -0.037 4.037 12 N -0.117 5.117 13 C 0.098 3.902 14 C -0.072 4.072 15 C -0.182 4.182 16 C -0.093 4.093 17 C -0.186 4.186 18 C 0.060 3.940 19 O -0.131 6.131 20 C -0.489 4.489 21 H 0.128 0.872 22 C -0.219 4.219 23 N -0.556 5.556 24 Si 0.835 3.165 25 H -0.188 1.188 26 H -0.202 1.202 27 H -0.172 1.172 28 C -0.207 4.207 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.207 0.793 38 H 0.149 0.851 39 H 0.169 0.831 40 H 0.142 0.858 41 H 0.081 0.919 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -21.266 5.658 -15.126 26.702 hybrid contribution 0.873 0.447 -0.248 1.012 sum -20.393 6.105 -15.373 26.258 Atomic orbital electron populations 1.22903 0.79515 1.03604 1.00998 1.87930 1.21326 1.28021 1.95626 1.22795 0.90068 0.85539 1.02983 1.23221 0.94273 0.98760 0.81146 0.87037 1.22090 1.01498 1.01045 0.97367 1.86760 1.33191 1.65251 1.41448 1.20203 0.80067 0.78547 0.83328 1.90877 1.57787 1.33424 1.58085 1.17106 0.95599 1.04508 0.95999 1.25180 0.92972 0.93148 0.92436 1.81182 1.09642 1.10888 1.10002 1.23486 0.90348 0.85774 0.90618 1.18756 0.92627 1.02259 0.93569 1.21469 0.98826 1.03830 0.94055 1.20958 0.94017 0.96958 0.97337 1.20756 0.92444 1.06579 0.98853 1.19724 0.85357 0.94796 0.94170 1.83992 1.11747 1.73629 1.43724 1.21864 0.86677 1.45247 0.95143 0.87243 1.26567 0.98575 0.96516 1.00241 1.70178 1.15473 1.45519 1.24417 0.84618 0.76314 0.78540 0.77031 1.18814 1.20189 1.17152 1.21473 0.95424 1.06474 0.97293 0.93665 0.92143 0.89275 0.91967 0.87908 0.92684 0.88317 0.91870 0.79337 0.85122 0.83050 0.85840 0.91867 0.83937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.54 16 2 O -0.41 -7.43 9.79 -145.57 -1.43 -8.85 16 3 C 0.06 0.84 5.82 71.98 0.42 1.26 16 4 C 0.08 1.36 2.98 30.60 0.09 1.45 16 5 H 0.11 1.67 7.16 -2.39 -0.02 1.66 16 6 C -0.16 -2.58 9.35 71.98 0.67 -1.91 16 7 O -0.35 -8.20 9.39 -54.57 -0.51 -8.71 16 8 C 0.53 12.78 7.85 70.15 0.55 13.33 16 9 O -0.51 -12.89 15.56 19.66 0.31 -12.58 16 10 C -0.13 -3.16 5.83 -19.85 -0.12 -3.27 16 11 C 0.28 7.98 11.25 88.34 0.99 8.97 16 12 N -0.44 -14.24 17.85 18.99 0.34 -13.90 16 13 C 0.12 2.91 9.47 24.34 0.23 3.14 16 14 C -0.07 -2.25 5.60 -20.19 -0.11 -2.36 16 15 C -0.16 -5.07 8.33 22.64 0.19 -4.88 16 16 C -0.07 -2.41 10.02 22.20 0.22 -2.19 16 17 C -0.17 -6.56 9.99 22.49 0.22 -6.33 16 18 C 0.11 5.01 6.64 22.53 0.15 5.16 16 19 O -0.22 -12.56 9.76 -22.87 -0.22 -12.78 16 20 C -0.41 -22.28 9.48 67.92 0.64 -21.64 16 21 H 0.11 5.22 5.20 -2.91 -0.02 5.20 16 22 C -0.02 -1.12 5.49 84.84 0.47 -0.66 16 23 N -0.92 -54.14 13.67 21.61 0.30 -53.85 16 24 Si 1.02 40.43 29.55 68.60 2.03 42.46 16 25 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 26 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 27 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 28 C -0.19 -7.16 8.92 22.75 0.20 -6.96 16 29 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 1.18 7.56 -2.39 -0.02 1.16 16 37 H 0.19 3.64 7.61 -2.91 -0.02 3.62 16 38 H 0.13 3.75 5.22 -2.91 -0.02 3.74 16 39 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 40 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 41 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 42 H 0.14 5.25 5.63 -2.91 -0.02 5.24 16 Total: -1.00 -70.74 374.74 7.95 -62.80 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 1.06 Total: 20.76 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: 6.08 Total: -15.34 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: 0.63 Total: -67.74 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -1.86 Total: -42.93 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -70.74 7.95 -62.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917618528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.043 kcal (2) G-P(sol) polarization free energy of solvation -70.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds